Wall clock time and date at job start Tue Mar 31 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35452 * 126.78156 * 2 1 4 4 C 1.41380 * 103.98715 * 180.09377 * 3 2 1 5 5 C 1.50698 * 126.79905 * 179.88646 * 4 3 2 6 6 O 1.42899 * 109.47163 * 359.71199 * 5 4 3 7 7 C 1.42905 * 113.99778 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46972 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00169 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46993 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.46972 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47303 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99822 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00339 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00303 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46812 * 89.99966 * 18 16 14 20 20 H 1.48494 * 109.47357 * 210.00041 * 18 16 14 21 21 H 1.48498 * 109.47162 * 330.00203 * 18 16 14 22 22 N 1.30175 * 106.39617 * 359.62536 * 4 3 2 23 23 O 1.20923 * 111.60623 * 0.24101 * 22 4 3 24 24 H 1.09000 * 109.47326 * 180.30121 * 1 2 3 25 25 H 1.08998 * 109.46827 * 300.30728 * 1 2 3 26 26 H 1.09004 * 109.46708 * 60.30621 * 1 2 3 27 27 H 1.07997 * 128.00296 * 359.96079 * 3 2 1 28 28 H 1.08997 * 109.46854 * 239.70946 * 5 4 3 29 29 H 1.08997 * 109.47005 * 119.71212 * 5 4 3 30 30 H 1.09004 * 109.47054 * 299.99711 * 7 6 5 31 31 H 1.09000 * 109.47187 * 59.99767 * 7 6 5 32 32 H 0.96996 * 119.99844 * 0.02562 * 10 8 7 33 33 H 1.09004 * 109.47042 * 300.00295 * 11 10 8 34 34 H 1.09004 * 109.46923 * 59.99881 * 11 10 8 35 35 H 1.08996 * 109.47452 * 300.00215 * 12 11 10 36 36 H 1.09000 * 109.47054 * 60.00055 * 12 11 10 37 37 H 1.08996 * 109.47407 * 300.00487 * 13 12 11 38 38 H 1.09000 * 109.46986 * 60.00258 * 13 12 11 39 39 H 0.97005 * 120.00027 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3181 1.0849 0.0000 4 6 3.6215 0.5371 -0.0022 5 6 4.9212 1.2999 -0.0056 6 8 4.6501 2.7029 -0.0130 7 6 5.8216 3.5212 -0.0173 8 6 5.4198 4.9736 -0.0256 9 8 4.2459 5.2780 -0.0281 10 7 6.3651 5.9343 -0.0302 11 6 5.9746 7.3462 -0.0388 12 6 7.2289 8.2223 -0.0433 13 6 6.8210 9.6969 -0.0529 14 6 8.0564 10.5599 -0.0580 15 1 9.0347 10.1023 -0.0550 16 6 7.9378 11.9335 -0.0663 17 7 6.7466 12.4906 -0.0694 18 14 9.4692 13.0032 -0.0718 19 1 9.8758 13.2781 -1.4733 20 1 9.1804 14.2848 0.6203 21 1 10.5690 12.2968 0.6331 22 7 3.4764 -0.7565 0.0048 23 8 2.3095 -1.0737 0.0062 24 1 -0.3634 -1.0276 0.0054 25 1 -0.3633 0.5186 0.8872 26 1 -0.3633 0.5091 -0.8928 27 1 2.0346 2.1270 -0.0006 28 1 5.4950 1.0359 -0.8939 29 1 5.4941 1.0452 0.8860 30 1 6.4137 3.3127 0.8739 31 1 6.4138 3.3033 -0.9061 32 1 7.3040 5.6908 -0.0286 33 1 5.3833 7.5542 -0.9307 34 1 5.3815 7.5646 0.8493 35 1 7.8205 8.0144 0.8482 36 1 7.8215 8.0038 -0.9316 37 1 6.2296 9.9045 -0.9447 38 1 6.2281 9.9157 0.8352 39 1 6.6631 13.4571 -0.0756 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357901369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:38 Heat of formation + Delta-G solvation = -35.542309 kcal Electronic energy + Delta-G solvation = -20514.116628 eV Core-core repulsion = 17039.075094 eV Total energy + Delta-G solvation = -3475.041534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.20419 -39.73592 -38.00846 -35.43344 -34.51341 -33.63699 -33.36415 -31.40207 -29.25934 -28.08637 -27.30138 -25.97477 -23.25959 -22.94091 -20.91935 -20.67628 -19.97319 -18.00076 -17.73694 -17.02716 -16.88256 -16.62335 -16.27569 -15.28687 -15.18043 -14.96030 -14.47274 -14.07404 -14.06944 -13.91747 -13.62001 -13.21756 -12.82618 -12.70589 -12.31538 -12.15709 -11.86828 -11.72342 -11.47042 -10.92959 -10.77397 -10.65698 -10.62419 -9.96137 -9.90755 -9.90203 -9.56887 -9.40859 -9.14865 -8.86111 -8.39820 -6.04332 -4.07654 1.16516 1.93489 2.52474 2.65936 2.83438 3.28949 3.35466 3.37950 3.54380 4.09624 4.35927 4.42145 4.62407 4.72549 4.82456 4.83708 4.87796 4.98502 5.02854 5.03282 5.09958 5.31448 5.39245 5.52110 5.65743 5.72909 5.84406 6.11162 6.39666 6.55040 6.56604 6.79189 6.95668 7.60284 7.61040 7.72600 7.94102 7.94518 8.29372 8.35553 8.98981 9.56666 11.06896 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.053144 B = 0.002020 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.746370 B =13856.995186 C =14342.085603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.205 4.205 4 C 0.018 3.982 5 C 0.143 3.857 6 O -0.356 6.356 7 C 0.046 3.954 8 C 0.508 3.492 9 O -0.523 6.523 10 N -0.724 5.724 11 C 0.118 3.882 12 C -0.121 4.121 13 C 0.023 3.977 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.363 5.363 23 O 0.100 5.900 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.179 0.821 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.399 0.601 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 -26.062 0.157 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.226 4.226 4 C -0.140 4.140 5 C 0.066 3.934 6 O -0.273 6.273 7 C -0.034 4.034 8 C 0.293 3.707 9 O -0.398 6.398 10 N -0.377 5.377 11 C -0.004 4.004 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.069 5.069 23 O 0.032 5.968 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.196 0.804 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.123 -26.594 0.166 27.532 hybrid contribution 1.286 1.291 -0.019 1.822 sum -5.837 -25.303 0.147 25.968 Atomic orbital electron populations 1.20348 0.83782 1.04549 1.04396 1.24568 0.96493 0.85909 1.03269 1.22464 0.90646 1.01590 1.07914 1.23112 0.97168 0.90115 1.03611 1.20313 0.90448 0.80607 1.02071 1.87960 1.29237 1.14535 1.95574 1.22269 0.88463 0.89773 1.02935 1.20093 0.86470 0.86755 0.77419 1.90734 1.17824 1.83231 1.48052 1.46091 1.09267 1.07186 1.75152 1.21677 0.99111 0.77471 1.02168 1.21895 0.94833 0.98213 1.00933 1.19035 0.97045 0.87650 0.97712 1.21194 0.92749 0.91165 1.51035 0.92634 1.25038 0.95955 0.98258 0.95264 1.69966 1.22112 1.10673 1.50465 0.86571 0.83235 0.79938 0.78102 1.20658 1.21193 1.19906 1.73768 0.97432 1.15275 1.20380 1.84806 1.11032 1.33222 1.67715 0.89947 0.89017 0.89019 0.80390 0.90641 0.90642 0.89902 0.89908 0.76728 0.91629 0.91618 0.92656 0.92663 0.96242 0.96227 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.45 36.01 0.38 0.04 16 2 C -0.04 -0.34 7.49 -35.30 -0.26 -0.61 16 3 C -0.20 -2.17 10.45 -39.38 -0.41 -2.58 16 4 C 0.02 0.20 7.28 -82.10 -0.60 -0.40 16 5 C 0.14 1.34 6.56 36.00 0.24 1.58 16 6 O -0.36 -4.21 9.37 -55.14 -0.52 -4.73 16 7 C 0.05 0.44 6.42 36.01 0.23 0.67 16 8 C 0.51 7.20 7.91 -10.99 -0.09 7.12 16 9 O -0.52 -9.94 16.50 -14.35 -0.24 -10.18 16 10 N -0.72 -9.61 5.56 -60.29 -0.33 -9.95 16 11 C 0.12 2.00 5.67 -4.04 -0.02 1.98 16 12 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 N -0.36 -4.28 12.07 33.42 0.40 -3.88 16 23 O 0.10 1.05 11.20 17.15 0.19 1.24 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.18 1.89 8.05 -52.49 -0.42 1.47 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.40 3.95 8.47 -40.82 -0.35 3.60 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -34.93 344.29 -6.63 -41.56 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.81 Total: -2.25 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.23 Total: -7.41 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.80 Total: -39.69 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.56 Total: -13.66 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.93 -6.63 -41.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357901369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.017 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds