Wall clock time and date at job start Tue Mar 31 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35452 * 126.78156 * 2 1 4 4 C 1.41380 * 103.98715 * 180.09377 * 3 2 1 5 5 C 1.50698 * 126.79905 * 179.88646 * 4 3 2 6 6 O 1.42899 * 109.47163 * 359.71199 * 5 4 3 7 7 C 1.42905 * 113.99778 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46972 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00169 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46993 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.46972 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47303 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99822 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00339 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00303 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46812 * 89.99966 * 18 16 14 20 20 H 1.48494 * 109.47357 * 210.00041 * 18 16 14 21 21 H 1.48498 * 109.47162 * 330.00203 * 18 16 14 22 22 N 1.30175 * 106.39617 * 359.62536 * 4 3 2 23 23 O 1.20923 * 111.60623 * 0.24101 * 22 4 3 24 24 H 1.09000 * 109.47326 * 180.30121 * 1 2 3 25 25 H 1.08998 * 109.46827 * 300.30728 * 1 2 3 26 26 H 1.09004 * 109.46708 * 60.30621 * 1 2 3 27 27 H 1.07997 * 128.00296 * 359.96079 * 3 2 1 28 28 H 1.08997 * 109.46854 * 239.70946 * 5 4 3 29 29 H 1.08997 * 109.47005 * 119.71212 * 5 4 3 30 30 H 1.09004 * 109.47054 * 299.99711 * 7 6 5 31 31 H 1.09000 * 109.47187 * 59.99767 * 7 6 5 32 32 H 0.96996 * 119.99844 * 0.02562 * 10 8 7 33 33 H 1.09004 * 109.47042 * 300.00295 * 11 10 8 34 34 H 1.09004 * 109.46923 * 59.99881 * 11 10 8 35 35 H 1.08996 * 109.47452 * 300.00215 * 12 11 10 36 36 H 1.09000 * 109.47054 * 60.00055 * 12 11 10 37 37 H 1.08996 * 109.47407 * 300.00487 * 13 12 11 38 38 H 1.09000 * 109.46986 * 60.00258 * 13 12 11 39 39 H 0.97005 * 120.00027 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3181 1.0849 0.0000 4 6 3.6215 0.5371 -0.0022 5 6 4.9212 1.2999 -0.0056 6 8 4.6501 2.7029 -0.0130 7 6 5.8216 3.5212 -0.0173 8 6 5.4198 4.9736 -0.0256 9 8 4.2459 5.2780 -0.0281 10 7 6.3651 5.9343 -0.0302 11 6 5.9746 7.3462 -0.0388 12 6 7.2289 8.2223 -0.0433 13 6 6.8210 9.6969 -0.0529 14 6 8.0564 10.5599 -0.0580 15 1 9.0347 10.1023 -0.0550 16 6 7.9378 11.9335 -0.0663 17 7 6.7466 12.4906 -0.0694 18 14 9.4692 13.0032 -0.0718 19 1 9.8758 13.2781 -1.4733 20 1 9.1804 14.2848 0.6203 21 1 10.5690 12.2968 0.6331 22 7 3.4764 -0.7565 0.0048 23 8 2.3095 -1.0737 0.0062 24 1 -0.3634 -1.0276 0.0054 25 1 -0.3633 0.5186 0.8872 26 1 -0.3633 0.5091 -0.8928 27 1 2.0346 2.1270 -0.0006 28 1 5.4950 1.0359 -0.8939 29 1 5.4941 1.0452 0.8860 30 1 6.4137 3.3127 0.8739 31 1 6.4138 3.3033 -0.9061 32 1 7.3040 5.6908 -0.0286 33 1 5.3833 7.5542 -0.9307 34 1 5.3815 7.5646 0.8493 35 1 7.8205 8.0144 0.8482 36 1 7.8215 8.0038 -0.9316 37 1 6.2296 9.9045 -0.9447 38 1 6.2281 9.9157 0.8352 39 1 6.6631 13.4571 -0.0756 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357901369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:38 Heat of formation + Delta-G solvation = -59.631379 kcal Electronic energy + Delta-G solvation = -20515.161208 eV Core-core repulsion = 17039.075094 eV Total energy + Delta-G solvation = -3476.086115 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.97427 -40.83845 -38.88338 -36.92678 -35.28141 -35.19867 -34.28487 -33.12595 -30.29033 -28.69203 -28.51128 -27.24660 -24.78275 -23.93582 -22.32212 -21.70844 -21.09967 -18.77888 -18.59377 -18.52989 -17.93725 -17.62738 -17.43645 -16.60152 -16.43637 -16.26801 -15.81039 -15.32877 -15.03010 -14.51353 -14.31738 -14.09146 -14.02043 -13.80021 -13.76103 -13.32380 -13.25085 -12.89132 -12.74472 -12.54468 -12.37669 -12.18138 -11.66734 -11.58156 -11.42397 -11.23798 -10.83083 -10.67338 -10.55254 -10.27945 -10.12041 -8.19321 -6.30817 0.43513 1.15934 1.42176 1.43473 1.54319 1.57278 1.64893 2.16322 2.41777 2.63928 3.14509 3.39915 3.64932 3.75101 4.05889 4.14955 4.18861 4.19533 4.24341 4.27285 4.36869 4.41568 4.47154 4.55647 4.71720 4.87897 4.94915 4.97416 4.99279 5.17953 5.23000 5.41179 5.52939 5.71248 5.84720 5.88429 6.22320 6.57911 6.87134 7.18801 7.24351 7.38877 8.92741 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.053144 B = 0.002020 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.746370 B =13856.995186 C =14342.085603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.235 4.235 4 C 0.006 3.994 5 C 0.143 3.857 6 O -0.387 6.387 7 C 0.052 3.948 8 C 0.504 3.496 9 O -0.580 6.580 10 N -0.710 5.710 11 C 0.131 3.869 12 C -0.101 4.101 13 C 0.021 3.979 14 C -0.540 4.540 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.259 1.259 22 N -0.384 5.384 23 O 0.090 5.910 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.171 0.829 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.420 0.580 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.070 0.930 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 -27.566 0.166 28.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.257 4.257 4 C -0.152 4.152 5 C 0.066 3.934 6 O -0.305 6.305 7 C -0.027 4.027 8 C 0.291 3.709 9 O -0.460 6.460 10 N -0.364 5.364 11 C 0.007 3.993 12 C -0.139 4.139 13 C -0.016 4.016 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.183 1.183 22 N -0.092 5.092 23 O 0.025 5.975 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.189 0.811 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.257 0.743 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.199 -28.144 0.175 28.621 hybrid contribution 0.617 1.746 -0.023 1.852 sum -4.582 -26.398 0.152 26.793 Atomic orbital electron populations 1.20590 0.80795 1.06143 1.05561 1.25229 0.97954 0.84882 1.00582 1.22535 0.91224 1.01782 1.10121 1.23554 0.98320 0.90263 1.03062 1.20484 0.89817 0.79177 1.03876 1.87917 1.30798 1.15853 1.95955 1.22359 0.88130 0.85880 1.06323 1.20994 0.85537 0.88752 0.75647 1.90714 1.20292 1.84348 1.50606 1.45810 1.10523 1.05432 1.74603 1.21226 0.97802 0.79679 1.00631 1.21594 0.95629 0.94308 1.02361 1.18963 0.95821 0.91812 0.95036 1.21690 0.93886 0.91882 1.50342 0.91379 1.26047 0.99322 1.00076 0.94856 1.70116 1.24690 1.11047 1.51725 0.85402 0.79209 0.77715 0.78434 1.19860 1.21157 1.18345 1.73747 0.98088 1.15556 1.21850 1.84769 1.11037 1.33781 1.67868 0.88157 0.87724 0.87730 0.81149 0.88698 0.88698 0.86301 0.86313 0.74266 0.93350 0.93340 0.91107 0.91098 0.99038 0.99022 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.45 71.24 0.74 0.19 16 2 C -0.02 -0.39 7.49 25.04 0.19 -0.20 16 3 C -0.23 -5.00 10.45 22.40 0.23 -4.77 16 4 C 0.01 0.13 7.28 43.58 0.32 0.45 16 5 C 0.14 2.42 6.56 71.24 0.47 2.88 16 6 O -0.39 -8.59 9.37 -129.94 -1.22 -9.81 16 7 C 0.05 0.85 6.42 71.24 0.46 1.30 16 8 C 0.50 13.67 7.91 87.66 0.69 14.36 16 9 O -0.58 -22.45 16.50 16.00 0.26 -22.19 16 10 N -0.71 -17.62 5.56 -463.05 -2.57 -20.19 16 11 C 0.13 4.45 5.67 86.38 0.49 4.94 16 12 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 13 C 0.02 1.10 4.97 29.85 0.15 1.24 16 14 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 15 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 16 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 17 N -0.94 -56.92 13.29 21.45 0.28 -56.64 16 18 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 22 N -0.38 -8.89 12.07 -49.55 -0.60 -9.49 16 23 O 0.09 1.86 11.20 71.55 0.80 2.66 16 24 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.17 3.81 8.05 -2.91 -0.02 3.79 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.12 1.12 8.14 -2.38 -0.02 1.11 16 31 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.42 6.94 8.47 -92.71 -0.79 6.15 16 33 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -78.82 344.29 3.85 -74.97 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.27 Total: 7.79 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.60 Total: -12.50 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -2.89 Total: -86.32 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.15 Total: -29.33 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -78.82 3.85 -74.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357901369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.334 kcal (2) G-P(sol) polarization free energy of solvation -78.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds