Wall clock time and date at job start Tue Mar 31 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.53002 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46891 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.20826 * 119.99541 * 0.02562 * 7 6 5 9 9 O 1.34221 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.45198 * 116.99903 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47215 * 30.00423 * 10 9 7 12 12 C 1.50703 * 109.47248 * 269.99781 * 10 9 7 13 13 H 1.07996 * 119.99796 * 119.99965 * 12 10 9 14 14 C 1.37877 * 120.00242 * 300.00085 * 12 10 9 15 15 N 1.31518 * 119.99917 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00119 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46991 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47266 * 120.00184 * 16 14 12 19 19 H 1.48498 * 109.46843 * 240.00179 * 16 14 12 20 20 C 1.50703 * 109.47160 * 150.00217 * 10 9 7 21 21 C 1.34515 * 125.78932 * 219.71848 * 20 10 9 22 22 C 1.41381 * 106.84254 * 179.88610 * 21 20 10 23 23 C 1.34517 * 106.84052 * 0.37199 * 22 21 20 24 24 O 1.34301 * 125.79356 * 40.02251 * 20 10 9 25 25 H 1.08994 * 109.47036 * 59.99891 * 1 2 3 26 26 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46796 * 299.99747 * 1 2 3 28 28 H 1.08998 * 109.46610 * 59.99757 * 3 2 1 29 29 H 1.09001 * 109.46558 * 300.00242 * 3 2 1 30 30 H 1.08992 * 109.47056 * 59.99782 * 4 3 2 31 31 H 1.08996 * 109.46698 * 299.99898 * 4 3 2 32 32 H 1.09001 * 109.47372 * 59.99964 * 5 4 3 33 33 H 1.09004 * 109.47108 * 299.99708 * 5 4 3 34 34 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 35 35 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 36 36 H 0.96989 * 119.99945 * 179.97438 * 15 14 12 37 37 H 1.07997 * 126.58027 * 0.02562 * 21 20 10 38 38 H 1.08001 * 126.58246 * 180.16285 * 22 21 20 39 39 H 1.07992 * 125.79192 * 179.75123 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6830 2.4616 0.0000 7 6 6.2960 3.8383 0.0000 8 8 5.5857 4.8158 0.0005 9 8 7.6308 3.9786 -0.0005 10 6 8.1512 5.3342 0.0001 11 1 7.4508 5.9919 0.5147 12 6 8.3306 5.8041 -1.4205 13 1 7.7967 6.6742 -1.7729 14 6 9.1762 5.1231 -2.2703 15 7 9.8267 4.0637 -1.8410 16 14 9.3981 5.7051 -4.0314 17 1 8.5608 6.9093 -4.2639 18 1 10.8254 6.0412 -4.2656 19 1 8.9838 4.6271 -4.9648 20 6 9.4803 5.3618 0.7099 21 6 9.9062 6.3264 1.5451 22 6 11.1972 5.9498 1.9815 23 6 11.4864 4.7816 1.3804 24 8 10.4428 4.4303 0.6114 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8567 0.6439 -0.8908 31 1 3.8574 0.6436 0.8891 32 1 3.8365 3.1228 0.8904 33 1 3.8358 3.1238 -0.8896 34 1 6.0046 1.9210 -0.8902 35 1 6.0047 1.9202 0.8897 36 1 10.4213 3.5845 -2.4389 37 1 9.3649 7.2165 1.8297 38 1 11.8311 6.4968 2.6636 39 1 12.4024 4.2215 1.4962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520425526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:49 Heat of formation + Delta-G solvation = -128.309973 kcal Electronic energy + Delta-G solvation = -21924.274816 eV Core-core repulsion = 18412.917823 eV Total energy + Delta-G solvation = -3511.356993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.29991 -39.24194 -38.09725 -35.73411 -34.42945 -32.92363 -31.82837 -30.23459 -29.51290 -26.81498 -26.41354 -24.26489 -22.93081 -21.28776 -20.62146 -19.62122 -19.38885 -17.08593 -16.59250 -16.41597 -16.33459 -16.18629 -15.43924 -15.15233 -14.92861 -14.69566 -14.42707 -14.09467 -13.27436 -12.91635 -12.55507 -12.51021 -11.95879 -11.78513 -11.69635 -11.50021 -11.47677 -11.39540 -11.25641 -11.02322 -10.95954 -10.92107 -10.53119 -10.33378 -9.82245 -9.81047 -9.45685 -9.02902 -8.83301 -8.74532 -7.34787 -6.22036 -4.43673 2.91162 3.18552 3.26956 3.29505 3.33034 3.49160 3.62485 4.03679 4.25435 4.28931 4.91129 4.91581 5.08590 5.12428 5.13696 5.27973 5.39069 5.40974 5.46782 5.51326 5.78886 5.84809 5.88606 5.94452 6.00410 6.03159 6.33777 6.39540 6.45462 6.48766 6.81126 6.90272 7.00770 7.21657 7.48797 7.63482 7.80871 7.84135 8.43057 8.60168 9.01205 9.30169 10.77128 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.003870 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.797496 B = 7233.109189 C = 8161.503700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.104 4.104 6 C -0.114 4.114 7 C 0.458 3.542 8 O -0.534 6.534 9 O -0.336 6.336 10 C 0.278 3.722 11 H 0.070 0.930 12 C -0.549 4.549 13 H 0.074 0.926 14 C 0.079 3.921 15 N -0.825 5.825 16 Si 0.897 3.103 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.080 3.920 21 C -0.266 4.266 22 C -0.223 4.223 23 C -0.082 4.082 24 O -0.111 6.111 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.267 0.733 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.708 -5.864 4.547 11.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.016 4.016 4 C -0.156 4.156 5 C -0.141 4.141 6 C -0.152 4.152 7 C 0.302 3.698 8 O -0.426 6.426 9 O -0.251 6.251 10 C 0.226 3.774 11 H 0.088 0.912 12 C -0.585 4.585 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.458 5.458 16 Si 0.723 3.277 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.205 1.205 20 C 0.026 3.974 21 C -0.286 4.286 22 C -0.242 4.242 23 C -0.152 4.152 24 O -0.003 6.003 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.626 -6.142 4.330 11.440 hybrid contribution 0.271 0.887 -0.892 1.286 sum -8.354 -5.255 3.439 10.451 Atomic orbital electron populations 1.22719 0.81280 1.02536 0.99948 1.87866 1.19527 1.28532 1.95448 1.22590 0.94401 0.84239 1.00375 1.21525 0.92673 0.97822 1.03545 1.21278 0.93314 0.95710 1.03820 1.21290 0.95023 0.93671 1.05241 1.23221 0.82611 0.91440 0.72574 1.90536 1.63016 1.41542 1.47500 1.86723 1.20668 1.36832 1.80878 1.18765 0.84166 0.78843 0.95640 0.91178 1.21297 1.28187 1.14551 0.94417 0.90797 1.25166 0.94227 0.94448 0.99280 1.70051 1.24344 1.15999 1.35407 0.86451 0.78210 0.79177 0.83846 1.19292 1.20568 1.20501 1.22833 0.91508 0.88610 0.94467 1.21191 0.98268 1.03014 1.06082 1.21497 0.98021 0.98664 1.06028 1.23822 0.94153 0.99120 0.98093 1.84474 1.21417 1.42717 1.51658 0.94137 0.89805 0.94159 0.93205 0.93147 0.90875 0.90979 0.91087 0.90867 0.88224 0.88630 0.92333 0.84980 0.85179 0.80038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.65 10.70 -35.23 -0.38 -5.02 16 3 C 0.06 0.66 5.94 37.16 0.22 0.88 16 4 C -0.12 -1.36 5.58 -26.73 -0.15 -1.51 16 5 C -0.10 -1.41 4.50 -26.73 -0.12 -1.53 16 6 C -0.11 -1.82 5.81 -27.88 -0.16 -1.98 16 7 C 0.46 9.99 7.92 36.01 0.29 10.27 16 8 O -0.53 -12.64 15.20 -18.75 -0.29 -12.93 16 9 O -0.34 -8.44 9.27 -41.26 -0.38 -8.82 16 10 C 0.28 7.23 2.58 -29.03 -0.07 7.15 16 11 H 0.07 1.79 7.15 -51.93 -0.37 1.42 16 12 C -0.55 -15.14 8.90 -34.44 -0.31 -15.44 16 13 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 14 C 0.08 2.14 5.24 -17.82 -0.09 2.05 16 15 N -0.83 -22.67 10.45 55.43 0.58 -22.09 16 16 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.08 1.99 5.68 -35.62 -0.20 1.79 16 21 C -0.27 -5.93 10.80 -39.70 -0.43 -6.36 16 22 C -0.22 -4.43 10.91 -39.70 -0.43 -4.87 16 23 C -0.08 -1.69 12.09 29.42 0.36 -1.34 16 24 O -0.11 -2.78 8.62 4.49 0.04 -2.74 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 38 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.18 2.92 8.06 -52.49 -0.42 2.50 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -31.69 339.00 -6.17 -37.86 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.83 Total: 2.36 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 0.00 Total: -9.51 kcal Atomic # 7 Polarization: -22.67 SS G_CDS: 0.58 Total: -22.09 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.01 Total: -29.52 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.69 -6.17 -37.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.453 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds