Wall clock time and date at job start Tue Mar 31 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.53002 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46891 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.20826 * 119.99541 * 0.02562 * 7 6 5 9 9 O 1.34221 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.45198 * 116.99903 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47215 * 30.00423 * 10 9 7 12 12 C 1.50703 * 109.47248 * 269.99781 * 10 9 7 13 13 H 1.07996 * 119.99796 * 119.99965 * 12 10 9 14 14 C 1.37877 * 120.00242 * 300.00085 * 12 10 9 15 15 N 1.31518 * 119.99917 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00119 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46991 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47266 * 120.00184 * 16 14 12 19 19 H 1.48498 * 109.46843 * 240.00179 * 16 14 12 20 20 C 1.50703 * 109.47160 * 150.00217 * 10 9 7 21 21 C 1.34515 * 125.78932 * 219.71848 * 20 10 9 22 22 C 1.41381 * 106.84254 * 179.88610 * 21 20 10 23 23 C 1.34517 * 106.84052 * 0.37199 * 22 21 20 24 24 O 1.34301 * 125.79356 * 40.02251 * 20 10 9 25 25 H 1.08994 * 109.47036 * 59.99891 * 1 2 3 26 26 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46796 * 299.99747 * 1 2 3 28 28 H 1.08998 * 109.46610 * 59.99757 * 3 2 1 29 29 H 1.09001 * 109.46558 * 300.00242 * 3 2 1 30 30 H 1.08992 * 109.47056 * 59.99782 * 4 3 2 31 31 H 1.08996 * 109.46698 * 299.99898 * 4 3 2 32 32 H 1.09001 * 109.47372 * 59.99964 * 5 4 3 33 33 H 1.09004 * 109.47108 * 299.99708 * 5 4 3 34 34 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 35 35 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 36 36 H 0.96989 * 119.99945 * 179.97438 * 15 14 12 37 37 H 1.07997 * 126.58027 * 0.02562 * 21 20 10 38 38 H 1.08001 * 126.58246 * 180.16285 * 22 21 20 39 39 H 1.07992 * 125.79192 * 179.75123 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6830 2.4616 0.0000 7 6 6.2960 3.8383 0.0000 8 8 5.5857 4.8158 0.0005 9 8 7.6308 3.9786 -0.0005 10 6 8.1512 5.3342 0.0001 11 1 7.4508 5.9919 0.5147 12 6 8.3306 5.8041 -1.4205 13 1 7.7967 6.6742 -1.7729 14 6 9.1762 5.1231 -2.2703 15 7 9.8267 4.0637 -1.8410 16 14 9.3981 5.7051 -4.0314 17 1 8.5608 6.9093 -4.2639 18 1 10.8254 6.0412 -4.2656 19 1 8.9838 4.6271 -4.9648 20 6 9.4803 5.3618 0.7099 21 6 9.9062 6.3264 1.5451 22 6 11.1972 5.9498 1.9815 23 6 11.4864 4.7816 1.3804 24 8 10.4428 4.4303 0.6114 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8567 0.6439 -0.8908 31 1 3.8574 0.6436 0.8891 32 1 3.8365 3.1228 0.8904 33 1 3.8358 3.1238 -0.8896 34 1 6.0046 1.9210 -0.8902 35 1 6.0047 1.9202 0.8897 36 1 10.4213 3.5845 -2.4389 37 1 9.3649 7.2165 1.8297 38 1 11.8311 6.4968 2.6636 39 1 12.4024 4.2215 1.4962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520425526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:48 Heat of formation + Delta-G solvation = -146.686618 kcal Electronic energy + Delta-G solvation = -21925.071687 eV Core-core repulsion = 18412.917823 eV Total energy + Delta-G solvation = -3512.153864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.03160 -41.01134 -38.94419 -37.47452 -35.67544 -34.91721 -33.56242 -31.84615 -30.84275 -28.41447 -27.48601 -25.63609 -24.53118 -22.50753 -22.16591 -21.26380 -21.11579 -18.99181 -18.26234 -17.97216 -17.39062 -17.20751 -16.99507 -16.73033 -16.48266 -16.24012 -15.79188 -15.42312 -14.90524 -14.52248 -13.77744 -13.75915 -13.53009 -13.38266 -13.30051 -13.07244 -12.94175 -12.84582 -12.61427 -12.43366 -12.32139 -12.18434 -11.89810 -11.82487 -11.60808 -11.26494 -10.94107 -10.78683 -10.59885 -10.48821 -9.08691 -8.22495 -6.52915 1.18027 1.36051 1.38075 1.49046 1.56660 1.90418 2.25799 2.33313 2.61169 2.87179 3.09119 3.83915 3.96880 4.00510 4.29214 4.30969 4.36742 4.40210 4.42083 4.49202 4.54790 4.56643 4.61214 4.71244 4.80920 4.83304 4.87290 4.99869 5.13809 5.23567 5.27656 5.37409 5.43830 5.57884 5.79847 5.90765 6.03973 6.24386 6.51746 6.73349 7.15152 7.27901 8.75553 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.003870 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.797496 B = 7233.109189 C = 8161.503700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.059 3.941 4 C -0.110 4.110 5 C -0.094 4.094 6 C -0.105 4.105 7 C 0.446 3.554 8 O -0.559 6.559 9 O -0.352 6.352 10 C 0.277 3.723 11 H 0.057 0.943 12 C -0.578 4.578 13 H 0.058 0.942 14 C 0.042 3.958 15 N -0.844 5.844 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.273 1.273 19 H -0.271 1.271 20 C 0.038 3.962 21 C -0.266 4.266 22 C -0.220 4.220 23 C -0.083 4.083 24 O -0.141 6.141 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.269 0.731 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 -6.631 4.853 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.017 4.017 4 C -0.147 4.147 5 C -0.132 4.132 6 C -0.142 4.142 7 C 0.292 3.708 8 O -0.453 6.453 9 O -0.268 6.268 10 C 0.225 3.775 11 H 0.075 0.925 12 C -0.614 4.614 13 H 0.077 0.923 14 C -0.167 4.167 15 N -0.476 5.476 16 Si 0.780 3.220 17 H -0.196 1.196 18 H -0.198 1.198 19 H -0.196 1.196 20 C -0.014 4.014 21 C -0.286 4.286 22 C -0.239 4.239 23 C -0.151 4.151 24 O -0.033 6.033 25 H 0.066 0.934 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.078 0.922 37 H 0.163 0.837 38 H 0.188 0.812 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.188 -6.915 4.646 11.681 hybrid contribution 0.111 1.127 -0.881 1.435 sum -8.077 -5.788 3.765 10.626 Atomic orbital electron populations 1.22925 0.79623 1.03812 1.00776 1.87820 1.21419 1.28781 1.95614 1.22570 0.93884 0.84303 1.00928 1.21408 0.93186 0.96085 1.04028 1.21192 0.91672 0.97137 1.03187 1.21425 0.96060 0.89991 1.06753 1.24399 0.81569 0.93540 0.71337 1.90507 1.63111 1.43084 1.48548 1.86699 1.22560 1.36150 1.81376 1.18589 0.84871 0.79049 0.95034 0.92515 1.21423 1.29193 1.14822 0.95987 0.92339 1.25795 0.93750 0.94511 1.02636 1.70154 1.24508 1.16535 1.36449 0.85544 0.78247 0.78702 0.79482 1.19554 1.19797 1.19626 1.22754 0.91772 0.90156 0.96760 1.21583 0.99441 1.02575 1.04956 1.21910 0.97202 0.98599 1.06171 1.24753 0.94135 0.99678 0.96573 1.84406 1.22476 1.43402 1.53054 0.93429 0.88403 0.93208 0.92438 0.92896 0.90749 0.90124 0.91247 0.92079 0.87349 0.86148 0.92174 0.83702 0.81222 0.75903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.18 10.70 -148.98 -1.59 -10.77 16 3 C 0.06 1.22 5.94 71.98 0.43 1.65 16 4 C -0.11 -2.36 5.58 30.59 0.17 -2.19 16 5 C -0.09 -2.51 4.50 30.59 0.14 -2.37 16 6 C -0.10 -3.28 5.81 29.85 0.17 -3.11 16 7 C 0.45 19.92 7.92 71.24 0.56 20.48 16 8 O -0.56 -27.41 15.20 21.96 0.33 -27.08 16 9 O -0.35 -18.25 9.27 -49.39 -0.46 -18.70 16 10 C 0.28 14.96 2.58 29.10 0.08 15.04 16 11 H 0.06 3.07 7.15 -2.39 -0.02 3.06 16 12 C -0.58 -32.99 8.90 25.60 0.23 -32.77 16 13 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 14 C 0.04 2.28 5.24 84.65 0.44 2.72 16 15 N -0.84 -46.77 10.45 21.45 0.22 -46.54 16 16 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 C 0.04 1.95 5.68 24.83 0.14 2.10 16 21 C -0.27 -11.73 10.80 22.19 0.24 -11.49 16 22 C -0.22 -8.21 10.91 22.19 0.24 -7.97 16 23 C -0.08 -3.23 12.09 66.97 0.81 -2.42 16 24 O -0.14 -7.02 8.62 -1.28 -0.01 -7.03 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.87 8.10 -2.39 -0.02 1.85 16 33 H 0.06 1.77 8.10 -2.38 -0.02 1.75 16 34 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.27 14.02 8.31 -92.72 -0.77 13.25 16 37 H 0.15 5.80 8.06 -2.91 -0.02 5.77 16 38 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 39 H 0.22 6.41 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -69.63 339.00 6.45 -63.18 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 1.03 Total: 20.59 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 4.90 Total: -18.72 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.22 Total: -46.54 kcal Atomic # 8 Polarization: -61.85 SS G_CDS: -1.73 Total: -63.58 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -69.63 6.45 -63.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.503 kcal (2) G-P(sol) polarization free energy of solvation -69.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds