Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30256 * 125.61866 * 2 1 4 4 C 1.34481 * 108.69761 * 179.97438 * 3 2 1 5 5 C 1.34328 * 107.66880 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.44066 * 179.97438 * 5 4 3 7 7 O 1.45198 * 109.47281 * 90.00189 * 6 5 4 8 8 C 1.34223 * 117.00232 * 179.97438 * 7 6 5 9 9 O 1.20828 * 120.00168 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99798 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.47338 * 319.99436 * 10 8 7 12 12 N 1.46907 * 109.46914 * 200.00029 * 10 8 7 13 13 C 1.52996 * 109.47417 * 80.00084 * 10 8 7 14 14 C 1.52997 * 109.47131 * 184.99962 * 13 10 8 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47418 * 89.99710 * 20 18 16 22 22 H 1.48498 * 109.47091 * 209.99770 * 20 18 16 23 23 H 1.48508 * 109.47394 * 329.99535 * 20 18 16 24 24 O 1.33969 * 125.61580 * 180.27876 * 2 1 3 25 25 H 1.09003 * 109.46637 * 90.02518 * 1 2 3 26 26 H 1.08998 * 109.47167 * 210.02694 * 1 2 3 27 27 H 1.09000 * 109.47429 * 330.03292 * 1 2 3 28 28 H 1.07996 * 126.16409 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47323 * 329.99931 * 6 5 4 30 30 H 1.09007 * 109.46890 * 209.99990 * 6 5 4 31 31 H 1.00896 * 110.99864 * 176.04430 * 12 10 8 32 32 H 1.00898 * 110.99789 * 299.99806 * 12 10 8 33 33 H 1.08996 * 109.47452 * 64.99962 * 13 10 8 34 34 H 1.09001 * 109.46997 * 304.99536 * 13 10 8 35 35 H 1.09001 * 109.47502 * 60.00153 * 14 13 10 36 36 H 1.09001 * 109.47289 * 299.99950 * 14 13 10 37 37 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 38 38 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 39 39 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5697 -0.6757 0.0015 6 6 4.7937 -1.5550 0.0018 7 8 5.1871 -1.8365 1.3709 8 6 6.2675 -2.6131 1.5471 9 8 6.8646 -3.0440 0.5891 10 6 6.7352 -2.9488 2.9398 11 1 6.6430 -2.0686 3.5761 12 7 8.1402 -3.3754 2.8950 13 6 5.8763 -4.0806 3.5074 14 6 6.2681 -4.3369 4.9640 15 6 5.4088 -5.4683 5.5318 16 6 5.7942 -5.7203 6.9667 17 1 6.5745 -5.1326 7.4274 18 6 5.1517 -6.7019 7.6909 19 7 4.2020 -7.4180 7.1297 20 14 5.6300 -7.0148 9.4693 21 1 4.8033 -6.1629 10.3615 22 1 5.4017 -8.4446 9.7991 23 1 7.0654 -6.6857 9.6612 24 8 2.2872 -1.0891 -0.0053 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3634 0.8903 0.5133 28 1 4.4157 1.3161 0.0003 29 1 5.6079 -1.0445 -0.5125 30 1 4.5694 -2.4902 -0.5113 31 1 8.4965 -3.5444 3.8237 32 1 8.2521 -4.1906 2.3110 33 1 6.0369 -4.9866 2.9232 34 1 4.8246 -3.7983 3.4584 35 1 6.1074 -3.4309 5.5483 36 1 7.3198 -4.6191 5.0131 37 1 4.3572 -5.1856 5.4828 38 1 5.5690 -6.3744 4.9476 39 1 3.7502 -8.1088 7.6391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579878840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -80.124369 kcal Electronic energy + Delta-G solvation = -21214.570020 eV Core-core repulsion = 17737.595263 eV Total energy + Delta-G solvation = -3476.974758 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.66633 -40.65226 -37.20439 -36.03964 -35.09376 -33.44870 -32.96936 -31.33563 -30.10013 -28.10333 -26.25806 -25.11012 -22.91095 -22.57316 -21.39583 -20.64536 -20.24243 -18.08640 -17.58719 -17.01647 -16.68312 -16.43026 -16.19337 -15.29681 -14.85220 -14.58400 -14.47353 -14.19270 -13.96742 -13.53852 -13.41113 -13.26858 -12.99159 -12.65237 -12.51899 -12.10944 -11.89205 -11.60192 -11.29154 -11.11876 -10.90701 -10.84254 -10.78268 -10.61331 -10.38843 -9.82773 -9.48851 -9.19218 -9.14427 -8.69957 -8.40353 -6.05190 -4.08369 0.88699 2.07519 2.14018 2.32027 2.78722 3.28613 3.35117 3.37982 3.69464 4.26732 4.41080 4.57050 4.59963 4.63993 4.69920 4.93598 4.97998 5.07356 5.10673 5.16730 5.18198 5.30764 5.49838 5.62145 5.69076 5.84794 5.97022 6.14921 6.19309 6.51005 6.67006 6.95677 7.00849 7.36307 7.41710 7.59607 7.66357 7.71964 7.93513 8.35008 8.98652 9.56301 11.06068 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.003058 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.938884 B = 9153.121071 C =10384.920289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.204 3.796 3 N -0.489 5.489 4 C -0.003 4.003 5 C -0.060 4.060 6 C 0.155 3.845 7 O -0.352 6.352 8 C 0.476 3.524 9 O -0.500 6.500 10 C 0.104 3.896 11 H 0.116 0.884 12 N -0.831 5.831 13 C -0.149 4.149 14 C -0.108 4.108 15 C 0.022 3.978 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 O -0.193 6.193 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.189 0.811 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.360 0.640 32 H 0.350 0.650 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.017 0.983 38 H 0.015 0.985 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 14.242 -15.648 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.002 4.002 3 N -0.219 5.219 4 C -0.142 4.142 5 C -0.112 4.112 6 C 0.081 3.919 7 O -0.269 6.269 8 C 0.318 3.682 9 O -0.386 6.386 10 C -0.009 4.009 11 H 0.133 0.867 12 N -0.366 5.366 13 C -0.188 4.188 14 C -0.146 4.146 15 C -0.015 4.015 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 O -0.080 6.080 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.206 0.794 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.998 15.256 -16.266 22.501 hybrid contribution 0.135 -1.824 1.275 2.229 sum -2.863 13.432 -14.991 20.331 Atomic orbital electron populations 1.20337 0.80943 1.05600 1.04855 1.26463 0.96647 0.78525 0.98593 1.70531 1.01901 1.30202 1.19218 1.23185 0.95383 0.92650 1.03011 1.22718 0.83238 0.94842 1.10437 1.20939 0.90033 0.98749 0.82160 1.86597 1.45592 1.64250 1.30491 1.23906 0.76824 0.74417 0.93019 1.90641 1.54857 1.50208 1.42930 1.21120 0.90057 1.00894 0.88878 0.86656 1.58676 1.15183 1.43732 1.18994 1.22451 1.00321 0.96635 0.99426 1.21662 1.00325 1.01131 0.91446 1.19083 0.94756 0.92229 0.95470 1.21235 1.19787 1.18140 0.96965 0.92626 1.25033 0.95054 0.95976 0.98405 1.69959 1.24279 1.22381 1.36799 0.86587 0.78904 0.77405 0.85064 1.20619 1.21210 1.19847 1.84410 1.16386 1.37777 1.69465 0.88711 0.88921 0.87798 0.79444 0.87383 0.89118 0.82316 0.83564 0.91570 0.90800 0.92732 0.93210 0.96508 0.96655 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.20 2.14 8.34 -12.95 -0.11 2.04 16 3 N -0.49 -5.81 11.29 -11.10 -0.13 -5.93 16 4 C 0.00 -0.03 11.80 -17.77 -0.21 -0.24 16 5 C -0.06 -0.68 7.03 -35.69 -0.25 -0.93 16 6 C 0.16 1.67 6.01 36.01 0.22 1.89 16 7 O -0.35 -4.67 10.20 -39.24 -0.40 -5.07 16 8 C 0.48 6.76 7.20 36.01 0.26 7.02 16 9 O -0.50 -7.90 16.00 -18.75 -0.30 -8.20 16 10 C 0.10 1.41 3.32 -68.86 -0.23 1.18 16 11 H 0.12 1.46 8.14 -51.93 -0.42 1.03 16 12 N -0.83 -10.80 8.94 -5.65 -0.05 -10.85 16 13 C -0.15 -2.37 4.84 -26.73 -0.13 -2.50 16 14 C -0.11 -2.03 4.92 -26.73 -0.13 -2.16 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 O -0.19 -2.34 10.78 5.35 0.06 -2.28 16 25 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.11 0.94 8.13 -51.93 -0.42 0.51 16 30 H 0.09 0.95 8.13 -51.92 -0.42 0.52 16 31 H 0.36 4.34 7.55 -39.29 -0.30 4.04 16 32 H 0.35 4.59 8.58 -39.29 -0.34 4.25 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.88 6.87 -51.93 -0.36 0.53 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -33.58 341.53 -6.31 -39.90 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.60 Total: 3.45 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -0.75 Total: -6.57 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.56 Total: -42.74 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.64 Total: -15.56 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.58 -6.31 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579878840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.227 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds