Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30256 * 125.61866 * 2 1 4 4 C 1.34481 * 108.69761 * 179.97438 * 3 2 1 5 5 C 1.34328 * 107.66880 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.44066 * 179.97438 * 5 4 3 7 7 O 1.45198 * 109.47281 * 90.00189 * 6 5 4 8 8 C 1.34223 * 117.00232 * 179.97438 * 7 6 5 9 9 O 1.20828 * 120.00168 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99798 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.47338 * 319.99436 * 10 8 7 12 12 N 1.46907 * 109.46914 * 200.00029 * 10 8 7 13 13 C 1.52996 * 109.47417 * 80.00084 * 10 8 7 14 14 C 1.52997 * 109.47131 * 184.99962 * 13 10 8 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47418 * 89.99710 * 20 18 16 22 22 H 1.48498 * 109.47091 * 209.99770 * 20 18 16 23 23 H 1.48508 * 109.47394 * 329.99535 * 20 18 16 24 24 O 1.33969 * 125.61580 * 180.27876 * 2 1 3 25 25 H 1.09003 * 109.46637 * 90.02518 * 1 2 3 26 26 H 1.08998 * 109.47167 * 210.02694 * 1 2 3 27 27 H 1.09000 * 109.47429 * 330.03292 * 1 2 3 28 28 H 1.07996 * 126.16409 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47323 * 329.99931 * 6 5 4 30 30 H 1.09007 * 109.46890 * 209.99990 * 6 5 4 31 31 H 1.00896 * 110.99864 * 176.04430 * 12 10 8 32 32 H 1.00898 * 110.99789 * 299.99806 * 12 10 8 33 33 H 1.08996 * 109.47452 * 64.99962 * 13 10 8 34 34 H 1.09001 * 109.46997 * 304.99536 * 13 10 8 35 35 H 1.09001 * 109.47502 * 60.00153 * 14 13 10 36 36 H 1.09001 * 109.47289 * 299.99950 * 14 13 10 37 37 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 38 38 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 39 39 H 0.96996 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5697 -0.6757 0.0015 6 6 4.7937 -1.5550 0.0018 7 8 5.1871 -1.8365 1.3709 8 6 6.2675 -2.6131 1.5471 9 8 6.8646 -3.0440 0.5891 10 6 6.7352 -2.9488 2.9398 11 1 6.6430 -2.0686 3.5761 12 7 8.1402 -3.3754 2.8950 13 6 5.8763 -4.0806 3.5074 14 6 6.2681 -4.3369 4.9640 15 6 5.4088 -5.4683 5.5318 16 6 5.7942 -5.7203 6.9667 17 1 6.5745 -5.1326 7.4274 18 6 5.1517 -6.7019 7.6909 19 7 4.2020 -7.4180 7.1297 20 14 5.6300 -7.0148 9.4693 21 1 4.8033 -6.1629 10.3615 22 1 5.4017 -8.4446 9.7991 23 1 7.0654 -6.6857 9.6612 24 8 2.2872 -1.0891 -0.0053 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3634 0.8903 0.5133 28 1 4.4157 1.3161 0.0003 29 1 5.6079 -1.0445 -0.5125 30 1 4.5694 -2.4902 -0.5113 31 1 8.4965 -3.5444 3.8237 32 1 8.2521 -4.1906 2.3110 33 1 6.0369 -4.9866 2.9232 34 1 4.8246 -3.7983 3.4584 35 1 6.1074 -3.4309 5.5483 36 1 7.3198 -4.6191 5.0131 37 1 4.3572 -5.1856 5.4828 38 1 5.5690 -6.3744 4.9476 39 1 3.7502 -8.1088 7.6391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579878840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -104.707899 kcal Electronic energy + Delta-G solvation = -21215.636042 eV Core-core repulsion = 17737.595263 eV Total energy + Delta-G solvation = -3478.040779 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.48354 -41.74134 -38.32853 -37.32220 -35.93135 -35.33375 -33.71483 -33.05778 -30.81810 -29.54596 -27.55933 -26.23643 -24.49765 -23.44685 -22.23561 -22.05302 -21.55981 -19.17879 -18.52087 -18.46394 -17.87571 -17.59729 -17.30165 -16.52288 -16.36583 -16.05076 -15.44495 -15.30931 -14.96596 -14.50792 -14.36217 -14.25614 -13.98541 -13.83398 -13.63224 -13.51274 -13.27986 -12.94260 -12.59652 -12.47173 -12.43576 -12.41904 -12.07377 -11.74444 -11.62116 -11.51446 -11.38223 -11.12754 -10.56592 -9.96854 -9.81528 -8.20917 -6.32237 0.05311 1.02133 1.24399 1.40726 1.41529 1.52583 1.53844 1.86995 2.40585 3.02390 3.12794 3.43096 3.53836 3.67451 3.78708 3.85567 3.94223 3.99327 4.11631 4.34779 4.48865 4.50470 4.58167 4.61131 4.70624 4.83703 4.95911 4.97163 5.09935 5.16244 5.22051 5.27488 5.51052 5.71277 5.84060 5.94610 6.22575 6.40927 6.55731 6.58232 6.85825 7.37691 8.90923 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.003058 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.938884 B = 9153.121071 C =10384.920289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.203 3.797 3 N -0.517 5.517 4 C -0.002 4.002 5 C -0.080 4.080 6 C 0.155 3.845 7 O -0.359 6.359 8 C 0.480 3.520 9 O -0.518 6.518 10 C 0.112 3.888 11 H 0.132 0.868 12 N -0.828 5.828 13 C -0.138 4.138 14 C -0.094 4.094 15 C 0.022 3.978 16 C -0.542 4.542 17 H 0.065 0.935 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.260 1.260 24 O -0.212 6.212 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.212 0.788 29 H 0.130 0.870 30 H 0.090 0.910 31 H 0.366 0.634 32 H 0.350 0.650 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.064 0.936 37 H -0.012 1.012 38 H -0.012 1.012 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 15.429 -15.238 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.002 4.002 3 N -0.247 5.247 4 C -0.141 4.141 5 C -0.132 4.132 6 C 0.081 3.919 7 O -0.276 6.276 8 C 0.323 3.677 9 O -0.406 6.406 10 C -0.001 4.001 11 H 0.150 0.850 12 N -0.363 5.363 13 C -0.178 4.178 14 C -0.132 4.132 15 C -0.015 4.015 16 C -0.580 4.580 17 H 0.083 0.917 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.185 1.185 24 O -0.100 6.100 25 H 0.134 0.866 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.229 0.771 29 H 0.148 0.852 30 H 0.109 0.891 31 H 0.184 0.816 32 H 0.164 0.836 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.374 16.465 -15.857 22.982 hybrid contribution -0.142 -2.163 1.092 2.427 sum -2.516 14.302 -14.765 20.709 Atomic orbital electron populations 1.20628 0.77971 1.06642 1.06539 1.27461 0.98173 0.77898 0.96702 1.70570 1.02539 1.30919 1.20667 1.23628 0.95904 0.92826 1.01727 1.22862 0.83247 0.95226 1.11899 1.21148 0.90638 0.99082 0.80998 1.86571 1.45034 1.63819 1.32173 1.23871 0.76779 0.74182 0.92852 1.90633 1.55495 1.50954 1.43482 1.21018 0.89746 1.00397 0.88973 0.85042 1.58695 1.14459 1.43765 1.19412 1.22265 1.00453 0.97486 0.97577 1.21436 0.99785 0.98944 0.92991 1.19012 0.94333 0.93383 0.94768 1.21733 1.19844 1.18159 0.98247 0.91675 1.26006 0.94960 0.95804 1.03284 1.70099 1.25594 1.23135 1.38761 0.85453 0.79191 0.77236 0.79211 1.19837 1.21029 1.18454 1.84411 1.16942 1.38695 1.69947 0.86557 0.87854 0.86665 0.77130 0.85180 0.89133 0.81627 0.83576 0.92293 0.91502 0.91849 0.91763 0.99315 0.99320 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.20 4.12 8.34 88.34 0.74 4.86 16 3 N -0.52 -11.86 11.29 -303.83 -3.43 -15.29 16 4 C 0.00 -0.04 11.80 83.39 0.98 0.94 16 5 C -0.08 -1.79 7.03 24.79 0.17 -1.61 16 6 C 0.15 3.21 6.01 71.24 0.43 3.64 16 7 O -0.36 -9.18 10.20 -51.35 -0.52 -9.71 16 8 C 0.48 13.07 7.20 71.24 0.51 13.59 16 9 O -0.52 -15.81 16.00 21.96 0.35 -15.45 16 10 C 0.11 2.88 3.32 44.17 0.15 3.03 16 11 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 12 N -0.83 -20.04 8.94 -171.79 -1.54 -21.58 16 13 C -0.14 -4.32 4.84 30.59 0.15 -4.17 16 14 C -0.09 -3.47 4.92 30.60 0.15 -3.32 16 15 C 0.02 1.13 4.97 29.85 0.15 1.28 16 16 C -0.54 -30.04 9.11 25.60 0.23 -29.80 16 17 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 18 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 19 N -0.94 -56.77 13.29 21.45 0.28 -56.48 16 20 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 24 O -0.21 -5.07 10.78 -3.76 -0.04 -5.11 16 25 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.21 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.13 2.07 8.13 -2.39 -0.02 2.05 16 30 H 0.09 1.86 8.13 -2.38 -0.02 1.84 16 31 H 0.37 8.04 7.55 -89.70 -0.68 7.36 16 32 H 0.35 8.69 8.58 -89.70 -0.77 7.92 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.06 2.18 6.87 -2.39 -0.02 2.16 16 37 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -72.25 341.53 1.63 -70.62 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -0.37 Total: 18.52 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 4.87 Total: -11.14 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -4.68 Total: -93.35 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.21 Total: -30.27 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -72.25 1.63 -70.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579878840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.087 kcal (2) G-P(sol) polarization free energy of solvation -72.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds