Wall clock time and date at job start Tue Mar 31 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99945 * 2 1 4 4 C 1.52990 * 109.46979 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47282 * 65.00230 * 4 3 2 6 6 C 1.36942 * 119.99750 * 264.42787 * 5 4 3 7 7 H 1.07998 * 119.99903 * 146.16531 * 6 5 4 8 8 C 1.38813 * 119.99940 * 326.16119 * 6 5 4 9 9 N 1.31611 * 120.00172 * 337.63400 * 8 6 5 10 10 Si 1.86802 * 119.99729 * 157.62871 * 8 6 5 11 11 H 1.48507 * 109.46786 * 90.00295 * 10 8 6 12 12 H 1.48492 * 109.47131 * 210.00148 * 10 8 6 13 13 H 1.48502 * 109.47366 * 330.00520 * 10 8 6 14 14 C 1.46495 * 120.00268 * 84.42897 * 5 4 3 15 15 C 1.50698 * 109.47395 * 89.99860 * 14 5 4 16 16 C 1.35479 * 125.50836 * 265.26360 * 15 14 5 17 17 C 1.39805 * 107.84169 * 180.14965 * 16 15 14 18 18 C 1.50700 * 126.51396 * 179.87191 * 17 16 15 19 19 C 1.37991 * 106.96727 * 359.60971 * 17 16 15 20 20 C 1.46488 * 126.26179 * 180.27560 * 19 17 16 21 21 O 1.21624 * 120.00154 * 359.97438 * 20 19 17 22 22 O 1.34897 * 120.00206 * 180.02562 * 20 19 17 23 23 N 1.34962 * 125.50480 * 84.97592 * 15 14 5 24 24 H 0.96998 * 125.63952 * 0.02562 * 23 15 14 25 25 H 1.09006 * 109.47211 * 299.99991 * 1 2 3 26 26 H 1.08997 * 109.47370 * 60.00080 * 1 2 3 27 27 H 1.08996 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47102 * 59.99800 * 3 2 1 29 29 H 1.09007 * 109.46701 * 300.00344 * 3 2 1 30 30 H 1.08997 * 109.47545 * 304.99965 * 4 3 2 31 31 H 1.09005 * 109.47081 * 184.99941 * 4 3 2 32 32 H 0.96999 * 120.00406 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47265 * 330.00046 * 14 5 4 34 34 H 1.09005 * 109.47045 * 210.00172 * 14 5 4 35 35 H 1.08002 * 126.07842 * 0.02562 * 16 15 14 36 36 H 1.09005 * 109.47243 * 269.68954 * 18 17 16 37 37 H 1.08996 * 109.47252 * 149.68848 * 18 17 16 38 38 H 1.09000 * 109.47334 * 29.68453 * 18 17 16 39 39 H 0.96694 * 117.00292 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2066 -0.7843 -1.3045 7 1 3.9950 -1.3340 -2.2097 8 6 4.7128 -1.4449 -0.1935 9 7 5.3731 -0.7745 0.7265 10 14 4.4565 -3.2856 -0.0044 11 1 5.5857 -4.0105 -0.6406 12 1 4.3966 -3.6313 1.4385 13 1 3.1836 -3.6782 -0.6608 14 6 4.1688 1.3872 -2.4494 15 6 5.5898 1.8872 -2.4914 16 6 6.0164 3.0855 -2.0249 17 6 7.3932 3.1683 -2.2530 18 6 8.2926 4.3249 -1.9000 19 6 7.7731 1.9873 -2.8572 20 6 9.1296 1.6251 -3.2752 21 8 10.0485 2.4018 -3.0975 22 8 9.3594 0.4305 -3.8580 23 7 6.6440 1.2113 -2.9947 24 1 6.6116 0.3255 -3.3886 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5683 0.8409 31 1 3.9785 2.1766 0.0889 32 1 5.7265 -1.2360 1.5031 33 1 3.4857 2.2361 -2.4209 34 1 3.9678 0.7887 -3.3381 35 1 5.4018 3.8429 -1.5614 36 1 8.3360 5.0204 -2.7383 37 1 9.2943 3.9534 -1.6839 38 1 7.8980 4.8375 -1.0228 39 1 10.2706 0.2363 -4.1169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599233354.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:20 Heat of formation + Delta-G solvation = -75.123402 kcal Electronic energy + Delta-G solvation = -22718.886225 eV Core-core repulsion = 19242.128326 eV Total energy + Delta-G solvation = -3476.757899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87809 -39.19904 -37.25663 -35.81460 -35.34564 -32.17765 -31.59476 -30.04842 -28.60464 -26.68759 -25.90032 -25.70596 -23.30718 -22.19311 -20.60044 -19.64461 -18.65018 -18.08232 -17.09217 -16.68786 -15.78462 -15.42338 -15.15448 -14.88618 -14.46039 -13.99966 -13.95056 -13.60406 -13.17941 -13.10285 -12.91105 -12.51043 -12.16877 -11.95206 -11.83857 -11.69965 -11.47630 -11.30419 -10.96971 -10.90732 -10.79791 -10.62823 -10.25806 -10.17344 -10.00819 -9.78326 -8.89575 -8.51927 -8.15462 -7.53527 -6.73027 -5.83590 -3.35407 1.72053 3.24032 3.34849 3.36590 3.44854 3.50876 3.61661 3.88938 4.48713 4.63152 5.31190 5.41885 5.50552 5.61884 5.71466 5.75643 5.76167 5.84303 6.01573 6.04285 6.09366 6.10835 6.21562 6.22297 6.33813 6.44724 6.50127 6.62485 6.69709 6.74213 6.91879 7.40265 7.60352 7.62962 7.74693 8.00180 8.08740 8.24329 8.44986 9.09538 9.74295 10.26975 11.17978 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.005645 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.438816 B = 4959.194910 C = 5993.969187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.046 3.954 4 C 0.142 3.858 5 N -0.562 5.562 6 C -0.253 4.253 7 H 0.060 0.940 8 C 0.021 3.979 9 N -0.881 5.881 10 Si 0.899 3.101 11 H -0.290 1.290 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.191 3.809 15 C 0.101 3.899 16 C -0.230 4.230 17 C -0.058 4.058 18 C -0.087 4.087 19 C -0.080 4.080 20 C 0.556 3.444 21 O -0.525 6.525 22 O -0.522 6.522 23 N -0.507 5.507 24 H 0.420 0.580 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.255 0.745 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.135 0.865 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 5.810 -5.586 8.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C -0.033 4.033 4 C 0.015 3.985 5 N -0.280 5.280 6 C -0.383 4.383 7 H 0.078 0.922 8 C -0.180 4.180 9 N -0.523 5.523 10 Si 0.728 3.272 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.202 1.202 14 C 0.063 3.937 15 C -0.025 4.025 16 C -0.254 4.254 17 C -0.067 4.067 18 C -0.144 4.144 19 C -0.190 4.190 20 C 0.404 3.596 21 O -0.415 6.415 22 O -0.334 6.334 23 N -0.101 5.101 24 H 0.258 0.742 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.126 0.874 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.153 0.847 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.381 5.701 -5.333 7.927 hybrid contribution 0.300 -1.333 0.014 1.366 sum -1.081 4.368 -5.318 6.967 Atomic orbital electron populations 1.22633 0.84124 1.01505 0.98480 1.88200 1.16671 1.27820 1.94855 1.23401 0.98708 0.84081 0.97071 1.21091 0.87273 0.97365 0.92748 1.43891 1.74169 1.03851 1.06067 1.18904 1.37155 0.82246 0.99949 0.92220 1.25034 0.96307 0.97829 0.98862 1.69978 1.34663 1.35507 1.12108 0.86384 0.78059 0.85619 0.77128 1.21719 1.21557 1.20180 1.19894 0.86436 0.94775 0.92625 1.22300 0.92788 0.91456 0.95968 1.20399 0.93940 0.99055 1.11991 1.19805 0.94509 0.93635 0.98783 1.20307 0.98774 0.94790 1.00540 1.18764 0.84670 0.95876 1.19657 1.19629 0.87888 0.78355 0.73750 1.90857 1.44605 1.51483 1.54590 1.84643 1.37603 1.37766 1.73399 1.41688 1.05973 1.16300 1.46111 0.74200 0.95468 0.95239 0.90734 0.95447 0.95344 0.87357 0.93807 0.93512 0.91603 0.92564 0.84724 0.91988 0.90810 0.92026 0.73385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.48 10.44 -35.23 -0.37 -7.85 16 3 C 0.05 0.88 6.28 37.15 0.23 1.11 16 4 C 0.14 3.12 5.63 -4.05 -0.02 3.10 16 5 N -0.56 -12.73 2.39 -174.61 -0.42 -13.15 16 6 C -0.25 -6.45 9.28 -15.06 -0.14 -6.59 16 7 H 0.06 1.52 7.92 -52.49 -0.42 1.11 16 8 C 0.02 0.55 4.91 -17.43 -0.09 0.46 16 9 N -0.88 -24.62 11.34 55.49 0.63 -23.99 16 10 Si 0.90 21.52 29.61 -169.99 -5.03 16.49 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.19 3.59 6.21 -5.20 -0.03 3.56 16 15 C 0.10 1.92 6.69 -82.20 -0.55 1.37 16 16 C -0.23 -4.22 10.66 -39.98 -0.43 -4.65 16 17 C -0.06 -1.08 6.22 -104.13 -0.65 -1.72 16 18 C -0.09 -1.37 9.83 36.01 0.35 -1.01 16 19 C -0.08 -1.52 7.10 -82.00 -0.58 -2.10 16 20 C 0.56 9.80 8.30 34.05 0.28 10.08 16 21 O -0.52 -9.87 15.60 -19.36 -0.30 -10.17 16 22 O -0.52 -7.49 13.44 -41.03 -0.55 -8.05 16 23 N -0.51 -9.54 6.07 -5.82 -0.04 -9.58 16 24 H 0.42 7.52 8.96 -40.82 -0.37 7.15 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.11 2.81 5.34 -51.93 -0.28 2.53 16 31 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 32 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 34 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 35 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.24 6.50 -51.93 -0.34 0.90 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.41 3.71 9.11 45.56 0.42 4.12 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -31.52 337.72 -6.25 -37.77 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.75 Total: 8.25 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -0.50 Total: 5.19 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.18 Total: -46.71 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -1.22 Total: -26.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.52 -6.25 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599233354.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.357 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds