Wall clock time and date at job start Tue Mar 31 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00244 * 2 1 4 4 H 1.48497 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46935 * 300.00180 * 3 2 1 6 6 H 1.48494 * 109.47047 * 60.00113 * 3 2 1 7 7 C 1.37886 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99866 * 173.55394 * 7 2 1 9 9 C 1.50697 * 120.00192 * 353.54853 * 7 2 1 10 10 C 1.53001 * 115.54534 * 85.41027 * 9 7 2 11 11 N 1.46501 * 109.47360 * 65.14209 * 10 9 7 12 12 C 1.34774 * 119.99908 * 178.28027 * 11 10 9 13 13 O 1.21589 * 120.00102 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00046 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99928 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46841 * 180.02562 * 15 14 12 17 17 H 1.08994 * 115.54940 * 330.72322 * 16 15 14 18 18 C 1.53001 * 117.49687 * 116.39826 * 16 15 14 19 19 C 1.52993 * 60.00253 * 107.48893 * 18 16 15 20 20 H 1.09002 * 117.50556 * 107.48746 * 19 18 16 21 21 C 1.50704 * 117.49784 * 252.51406 * 19 18 16 22 22 O 1.20823 * 120.00377 * 68.62059 * 21 19 18 23 23 O 1.34232 * 119.99526 * 248.62348 * 21 19 18 24 24 C 1.53001 * 117.50143 * 231.07673 * 9 7 2 25 25 C 1.52993 * 117.50036 * 299.74228 * 9 7 2 26 26 H 0.97001 * 120.00085 * 5.05761 * 1 2 3 27 27 H 1.09004 * 109.46860 * 305.13799 * 10 9 7 28 28 H 1.09004 * 109.46785 * 185.14342 * 10 9 7 29 29 H 0.96996 * 119.99653 * 358.28193 * 11 10 9 30 30 H 0.96996 * 119.99515 * 0.02562 * 14 12 11 31 31 H 1.08997 * 109.47504 * 300.00246 * 15 14 12 32 32 H 1.09008 * 109.46965 * 60.00501 * 15 14 12 33 33 H 1.09003 * 117.49721 * 214.98325 * 18 16 15 34 34 H 1.09002 * 117.49921 * 359.97438 * 18 16 15 35 35 H 0.96702 * 116.99918 * 180.02562 * 23 21 19 36 36 H 1.08997 * 117.49850 * 215.00653 * 24 9 7 37 37 H 1.09004 * 117.49382 * 0.02637 * 24 9 7 38 38 H 1.09005 * 117.49842 * 359.96858 * 25 9 7 39 39 H 1.08997 * 117.50590 * 144.99694 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1971 -0.1055 9 6 1.2581 -2.4952 0.1455 10 6 0.7021 -3.0860 -1.1516 11 7 1.8111 -3.4584 -2.0335 12 6 1.5599 -4.0347 -3.2256 13 8 0.4128 -4.2460 -3.5690 14 7 2.5801 -4.3768 -4.0371 15 6 2.3070 -5.0038 -5.3327 16 6 3.6282 -5.2890 -6.0498 17 1 4.4473 -4.6097 -5.8138 18 6 3.9807 -6.7520 -6.3256 19 6 3.5537 -5.8381 -7.4759 20 1 4.3239 -5.5200 -8.1786 21 6 2.1846 -6.0566 -8.0667 22 8 1.1985 -5.7998 -7.4176 23 8 2.0608 -6.5366 -9.3142 24 6 1.7470 -3.4739 1.2151 25 6 0.4417 -2.7017 1.4228 26 1 -0.4850 0.8368 -0.0741 27 1 0.0754 -2.3456 -1.6488 28 1 0.1074 -3.9704 -0.9224 29 1 2.7262 -3.2902 -1.7593 30 1 3.4952 -4.2086 -3.7629 31 1 1.7689 -5.9389 -5.1776 32 1 1.7008 -4.3322 -5.9407 33 1 5.0319 -7.0353 -6.2714 34 1 3.2716 -7.5114 -5.9958 35 1 1.1624 -6.6596 -9.6501 36 1 1.6725 -4.5387 0.9946 37 1 2.6083 -3.1765 1.8134 38 1 0.4448 -1.8968 2.1578 39 1 -0.4915 -3.2586 1.3392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:59 Heat of formation + Delta-G solvation = -71.068670 kcal Electronic energy + Delta-G solvation = -21699.661198 eV Core-core repulsion = 18223.079125 eV Total energy + Delta-G solvation = -3476.582073 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83414 -39.27480 -37.75305 -36.66222 -36.08735 -33.75498 -33.09945 -31.93363 -27.69577 -25.92154 -25.43355 -24.58885 -21.76257 -21.16710 -20.74337 -19.99195 -19.32075 -18.46316 -17.64158 -17.03614 -16.09281 -15.92216 -15.42595 -15.09833 -14.79467 -14.56367 -14.06695 -13.88098 -13.53470 -13.38890 -12.91983 -12.75391 -12.57575 -11.86268 -11.74351 -11.70032 -11.52631 -11.02546 -11.00089 -10.88617 -10.70646 -10.50103 -10.43150 -10.23262 -9.65219 -9.43944 -8.92152 -8.69378 -8.46686 -8.20507 -7.88294 -6.04494 -4.12953 1.82526 2.64035 3.15278 3.26697 3.35518 3.37260 3.42957 3.92609 4.26134 4.34535 4.37805 4.49918 4.91925 4.93396 5.04368 5.23729 5.32567 5.36642 5.42636 5.56113 5.95019 6.07088 6.12081 6.32067 6.39097 6.52397 6.65815 6.73588 6.88859 6.92148 7.13012 7.41030 7.47436 7.53060 7.65411 7.68357 7.84648 8.38009 8.76369 8.88059 9.32173 9.53509 11.03412 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023691 B = 0.003331 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.620819 B = 8404.806548 C = 8762.521670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.697 3.303 13 O -0.600 6.600 14 N -0.756 5.756 15 C 0.175 3.825 16 C -0.127 4.127 17 H 0.127 0.873 18 C -0.142 4.142 19 C -0.161 4.161 20 H 0.139 0.861 21 C 0.500 3.500 22 O -0.496 6.496 23 O -0.517 6.517 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.261 0.739 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.395 0.605 30 H 0.391 0.609 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.412 0.588 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.894 -12.191 -13.823 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.374 5.374 12 C 0.397 3.603 13 O -0.479 6.479 14 N -0.414 5.414 15 C 0.051 3.949 16 C -0.146 4.146 17 H 0.145 0.855 18 C -0.179 4.179 19 C -0.181 4.181 20 H 0.157 0.843 21 C 0.342 3.658 22 O -0.382 6.382 23 O -0.329 6.329 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.228 0.772 30 H 0.224 0.776 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.271 0.729 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.731 -12.120 -13.724 20.285 hybrid contribution 0.680 1.093 -0.139 1.295 sum 9.411 -11.026 -13.863 20.058 Atomic orbital electron populations 1.69986 1.05882 1.26775 1.48305 1.24993 0.94796 0.98932 0.94366 0.86579 0.80124 0.83926 0.77597 1.19764 1.21082 1.20985 1.20370 0.92810 0.88625 1.51883 0.92204 1.19046 0.98546 0.93868 0.85781 1.20833 0.86686 0.96627 0.89998 1.45127 1.11194 1.63867 1.17200 1.16020 0.84590 0.78939 0.80777 1.90891 1.19866 1.61632 1.75544 1.45151 1.08348 1.68116 1.19759 1.20783 0.92722 0.98890 0.82472 1.22720 1.00758 0.97527 0.93590 0.85497 1.23242 1.03432 0.93821 0.97429 1.21751 0.94286 1.09300 0.92719 0.84314 1.22397 0.91023 0.73203 0.79153 1.90852 1.40158 1.46673 1.60541 1.84479 1.38902 1.77677 1.31857 1.23017 0.98609 0.95699 1.07481 1.22490 0.92303 1.01070 1.02756 0.92911 0.91270 0.94793 0.77187 0.77565 0.91199 0.90232 0.86779 0.87608 0.72883 0.91650 0.90435 0.89849 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.60 12.91 55.43 0.72 -23.89 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.50 -12.95 8.63 -34.44 -0.30 -13.25 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.03 0.68 1.38 -155.66 -0.21 0.46 16 10 C 0.18 4.31 5.50 -4.04 -0.02 4.29 16 11 N -0.72 -14.64 5.48 -65.22 -0.36 -15.00 16 12 C 0.70 14.19 8.57 -86.92 -0.74 13.44 16 13 O -0.60 -14.93 16.34 5.29 0.09 -14.84 16 14 N -0.76 -11.32 5.56 -65.22 -0.36 -11.69 16 15 C 0.18 2.44 4.22 -4.04 -0.02 2.42 16 16 C -0.13 -1.12 5.85 -90.62 -0.53 -1.65 16 17 H 0.13 0.86 8.04 -51.93 -0.42 0.44 16 18 C -0.14 -0.97 9.88 -26.73 -0.26 -1.23 16 19 C -0.16 -1.24 6.30 -91.77 -0.58 -1.82 16 20 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 21 C 0.50 5.02 8.09 36.01 0.29 5.31 16 22 O -0.50 -6.96 13.87 -18.75 -0.26 -7.22 16 23 O -0.52 -3.87 13.42 -39.26 -0.53 -4.40 16 24 C -0.21 -4.43 9.96 -26.69 -0.27 -4.70 16 25 C -0.15 -3.44 9.42 -26.69 -0.25 -3.69 16 26 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 27 H 0.07 1.89 8.14 -51.93 -0.42 1.46 16 28 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 29 H 0.39 7.16 8.38 -40.82 -0.34 6.82 16 30 H 0.39 4.51 8.41 -40.82 -0.34 4.17 16 31 H 0.07 1.10 7.30 -51.93 -0.38 0.72 16 32 H 0.08 1.33 6.93 -51.92 -0.36 0.97 16 33 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.11 0.81 8.03 -51.93 -0.42 0.39 16 35 H 0.41 1.53 9.10 45.56 0.41 1.94 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 39 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -34.50 339.05 -8.38 -42.88 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -4.77 Total: 11.89 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.99 Total: 1.47 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.00 Total: -50.57 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.70 Total: -26.46 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.50 -8.38 -42.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.192 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds