Wall clock time and date at job start Tue Mar 31 2020 05:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.48680 * 110.99680 * 69.86913 * 12 11 10 14 14 C 1.54705 * 104.63441 * 158.39847 * 13 12 11 15 15 C 1.53010 * 104.58167 * 336.34288 * 14 13 12 16 16 C 1.53495 * 111.57372 * 238.59340 * 15 14 13 17 17 C 1.51975 * 102.22464 * 216.50542 * 16 15 14 18 18 C 1.47464 * 125.86311 * 194.29138 * 17 16 15 19 19 O 1.21470 * 120.00285 * 0.02562 * 18 17 16 20 20 O 1.34764 * 119.99838 * 179.97438 * 18 17 16 21 21 N 1.29227 * 108.26706 * 14.26930 * 17 16 15 22 22 O 1.41740 * 112.88465 * 0.26225 * 21 17 16 23 23 C 1.48855 * 111.00642 * 185.53981 * 12 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.08998 * 110.40708 * 277.18683 * 13 12 11 32 32 H 1.08995 * 110.40063 * 39.61250 * 13 12 11 33 33 H 1.08994 * 110.41918 * 95.11843 * 14 13 12 34 34 H 1.08997 * 110.41763 * 217.45352 * 14 13 12 35 35 H 1.08996 * 110.85541 * 334.69172 * 16 15 14 36 36 H 1.09001 * 110.84676 * 98.32422 * 16 15 14 37 37 H 0.96695 * 117.00065 * 180.02562 * 20 18 17 38 38 H 1.08998 * 110.46264 * 320.70323 * 23 12 11 39 39 H 1.09000 * 110.46953 * 83.29936 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.1448 -6.1982 1.3033 14 6 3.6518 -7.6585 1.3671 15 6 2.7181 -8.4315 0.4334 16 6 1.9924 -9.5645 1.1722 17 6 1.9391 -10.6554 0.1155 18 6 1.0981 -11.8657 0.1650 19 8 0.3632 -12.0564 1.1132 20 8 1.1441 -12.7598 -0.8423 21 7 2.7569 -10.3400 -0.8340 22 8 3.4312 -9.1160 -0.5967 23 6 1.7298 -7.4081 -0.1330 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 3.9840 -5.5032 1.3300 32 1 2.4582 -5.9981 2.1258 33 1 4.6805 -7.7197 1.0121 34 1 3.5781 -8.0425 2.3845 35 1 2.5657 -9.8919 2.0394 36 1 0.9880 -9.2568 1.4633 37 1 0.5744 -13.5373 -0.7655 38 1 0.8087 -7.4049 0.4497 39 1 1.5184 -7.6216 -1.1808 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:29 Heat of formation + Delta-G solvation = -88.857670 kcal Electronic energy + Delta-G solvation = -21691.332615 eV Core-core repulsion = 18213.979153 eV Total energy + Delta-G solvation = -3477.353462 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.31190 -41.11755 -39.12400 -37.36780 -36.09127 -34.56490 -34.15219 -32.18710 -30.53958 -28.69314 -26.79369 -26.38141 -24.69629 -22.76857 -22.20905 -21.49201 -21.18266 -19.20680 -18.52161 -18.23244 -17.42161 -17.07043 -16.76257 -16.61029 -16.35140 -15.98413 -15.64177 -15.34737 -14.71837 -14.47067 -14.32082 -14.20451 -13.60407 -13.56758 -13.25428 -13.11110 -12.95768 -12.75954 -12.68586 -12.53616 -12.32823 -12.26035 -12.18111 -12.09326 -11.90094 -11.45024 -11.37409 -11.17444 -10.79695 -10.55428 -9.49206 -8.20564 -6.31342 -0.49206 1.15147 1.40109 1.41497 1.48397 1.52614 1.94561 2.40755 2.80741 2.97056 3.12741 3.24485 3.35596 3.51800 3.63368 4.09702 4.17964 4.19735 4.28100 4.31521 4.44760 4.50444 4.55200 4.67604 4.70821 4.78448 4.89314 4.93339 5.05304 5.08619 5.22419 5.23310 5.51653 5.70491 5.77845 5.85627 5.91038 5.97505 6.26602 6.71087 6.85466 7.37916 8.91408 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.041705 B = 0.002685 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.218231 B =10427.717419 C =10674.398147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.087 4.087 11 C 0.058 3.942 12 N -0.522 5.522 13 C 0.028 3.972 14 C -0.104 4.104 15 C 0.066 3.934 16 C -0.113 4.113 17 C 0.058 3.942 18 C 0.574 3.426 19 O -0.503 6.503 20 O -0.493 6.493 21 N -0.234 5.234 22 O -0.175 6.175 23 C 0.021 3.979 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.011 1.011 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.445 0.555 38 H 0.075 0.925 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 -25.884 4.289 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.070 4.070 12 N -0.246 5.246 13 C -0.100 4.100 14 C -0.143 4.143 15 C 0.025 3.975 16 C -0.152 4.152 17 C -0.135 4.135 18 C 0.415 3.585 19 O -0.389 6.389 20 O -0.308 6.308 21 N 0.022 4.978 22 O -0.198 6.198 23 C -0.107 4.107 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.008 0.992 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.161 0.839 36 H 0.148 0.852 37 H 0.310 0.690 38 H 0.093 0.907 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.588 -25.656 3.022 26.238 hybrid contribution -1.242 0.883 1.016 1.831 sum 3.346 -24.773 4.037 25.322 Atomic orbital electron populations 1.70092 1.07781 1.27778 1.51770 1.25982 0.95787 1.03367 0.94734 0.85451 0.78713 0.78435 0.78489 1.19882 1.20607 1.18689 1.21692 0.93516 0.92423 1.50426 0.92328 1.18971 0.94384 0.93038 0.94770 1.21327 0.97932 0.92560 1.00670 1.22195 0.93721 0.90691 1.00432 1.65447 1.25157 1.01627 1.32407 1.23308 0.99180 0.97266 0.90202 1.22380 0.99571 0.92776 0.99526 1.23000 0.93391 0.93029 0.88111 1.23000 1.05824 0.88089 0.98302 1.25158 0.96795 0.96082 0.95454 1.19001 0.78557 0.81097 0.79884 1.90990 1.37862 1.75716 1.34297 1.84618 1.65689 1.35585 1.44860 1.78703 1.02677 0.98095 1.18371 1.91234 1.46929 1.24917 1.56706 1.23440 0.95820 0.89344 1.02097 0.92753 0.98802 0.99214 0.93427 0.92832 0.94338 0.91814 0.89772 0.92348 0.89081 0.86118 0.83912 0.85159 0.69033 0.90686 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.09 -3.64 5.21 30.59 0.16 -3.48 16 11 C 0.06 1.97 4.81 86.30 0.41 2.38 16 12 N -0.52 -15.05 5.37 -882.22 -4.74 -19.79 16 13 C 0.03 0.65 5.76 86.54 0.50 1.14 16 14 C -0.10 -1.76 6.49 31.18 0.20 -1.55 16 15 C 0.07 1.27 1.29 -10.58 -0.01 1.26 16 16 C -0.11 -1.54 5.97 30.42 0.18 -1.36 16 17 C 0.06 1.00 7.32 45.78 0.34 1.33 16 18 C 0.57 8.57 8.34 70.25 0.59 9.16 16 19 O -0.50 -9.13 17.74 19.93 0.35 -8.78 16 20 O -0.49 -5.14 13.43 -56.74 -0.76 -5.90 16 21 N -0.23 -5.28 12.53 -42.07 -0.53 -5.81 16 22 O -0.18 -4.36 11.92 -39.10 -0.47 -4.83 16 23 C 0.02 0.50 5.88 85.97 0.51 1.00 16 24 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 2.15 7.27 -2.39 -0.02 2.13 16 29 H 0.04 1.26 7.88 -2.39 -0.02 1.25 16 30 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 31 H 0.08 2.06 7.80 -2.39 -0.02 2.04 16 32 H 0.06 1.26 7.81 -2.39 -0.02 1.24 16 33 H 0.09 1.62 8.03 -2.39 -0.02 1.60 16 34 H 0.12 1.21 7.45 -2.39 -0.02 1.19 16 35 H 0.14 1.22 7.60 -2.39 -0.02 1.20 16 36 H 0.13 1.46 7.48 -2.39 -0.02 1.45 16 37 H 0.45 -0.23 9.11 -74.06 -0.67 -0.90 16 38 H 0.08 1.53 7.35 -2.39 -0.02 1.51 16 39 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 Total: -1.00 -73.77 330.22 0.28 -73.50 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 0.39 Total: 1.21 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 3.71 Total: -19.28 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -4.98 Total: -82.57 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.87 Total: -19.51 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -73.77 0.28 -73.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.361 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds