Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99973 * 2 1 4 4 H 1.48502 * 109.47001 * 270.00153 * 3 2 1 5 5 H 1.48507 * 109.47266 * 30.00191 * 3 2 1 6 6 H 1.48496 * 109.47035 * 150.00036 * 3 2 1 7 7 C 1.37868 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99890 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00569 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47307 * 179.97438 * 9 7 2 11 11 C 1.34782 * 119.99878 * 179.97438 * 10 9 7 12 12 O 1.21591 * 119.99935 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99937 * 180.02562 * 11 10 9 14 14 C 1.46731 * 125.24949 * 359.69296 * 13 11 10 15 15 C 1.54085 * 106.54021 * 161.50663 * 14 13 11 16 16 C 1.53864 * 103.73478 * 28.06315 * 15 14 13 17 17 C 1.50695 * 111.73492 * 94.20797 * 16 15 14 18 18 O 1.20836 * 120.00028 * 243.25444 * 17 16 15 19 19 O 1.34232 * 120.00514 * 63.25937 * 17 16 15 20 20 C 1.55092 * 110.14083 * 219.54156 * 16 15 14 21 21 C 1.54273 * 106.60459 * 118.67112 * 20 16 15 22 22 C 1.54680 * 104.11484 * 333.29909 * 21 20 16 23 23 C 1.46896 * 125.24798 * 180.02562 * 13 11 10 24 24 H 1.08995 * 111.83571 * 58.24090 * 23 13 11 25 25 H 0.96996 * 119.99648 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46937 * 59.99475 * 9 7 2 27 27 H 1.09003 * 109.46913 * 300.00138 * 9 7 2 28 28 H 0.96999 * 120.00317 * 0.02562 * 10 9 7 29 29 H 1.08998 * 110.04541 * 280.77533 * 14 13 11 30 30 H 1.08996 * 110.04922 * 42.23601 * 14 13 11 31 31 H 1.08994 * 110.57389 * 269.49712 * 15 14 13 32 32 H 1.09004 * 110.69708 * 146.68488 * 15 14 13 33 33 H 0.96694 * 117.00153 * 180.02562 * 19 17 16 34 34 H 1.09002 * 110.54983 * 359.07249 * 20 16 15 35 35 H 1.08999 * 109.47507 * 237.68700 * 20 16 15 36 36 H 1.08997 * 110.50285 * 214.63656 * 21 20 16 37 37 H 1.09000 * 110.61045 * 92.00919 * 21 20 16 38 38 H 1.09000 * 110.61261 * 278.82739 * 22 21 20 39 39 H 1.09001 * 110.74857 * 155.90845 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 1.7538 -4.8834 -0.0033 12 8 0.5584 -5.1056 -0.0026 13 7 2.6296 -5.9078 -0.0037 14 6 4.0907 -5.7728 -0.0099 15 6 4.6583 -7.1258 0.4604 16 6 3.5850 -8.1413 0.0311 17 6 3.8939 -8.7442 -1.3150 18 8 3.1448 -8.5610 -2.2453 19 8 5.0010 -9.4848 -1.4807 20 6 3.4037 -9.2226 1.1281 21 6 1.9418 -9.1204 1.6104 22 6 1.5555 -7.6483 1.3342 23 6 2.2687 -7.3317 -0.0049 24 1 1.6533 -7.5932 -0.8656 25 1 -0.4849 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8880 28 1 3.1567 -3.4354 -0.0022 29 1 4.4411 -5.5508 -1.0179 30 1 4.3958 -4.9814 0.6747 31 1 4.7818 -7.1338 1.5433 32 1 5.6063 -7.3386 -0.0337 33 1 5.1569 -9.8502 -2.3623 34 1 4.0850 -9.0421 1.9595 35 1 3.5884 -10.2082 0.7009 36 1 1.8753 -9.3391 2.6761 37 1 1.3023 -9.7960 1.0423 38 1 1.9244 -6.9993 2.1285 39 1 0.4756 -7.5461 1.2272 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = -123.901227 kcal Electronic energy + Delta-G solvation = -22893.342898 eV Core-core repulsion = 19414.469834 eV Total energy + Delta-G solvation = -3478.873065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40465 -39.56372 -37.93971 -36.32464 -34.64599 -34.09706 -32.22105 -31.83979 -28.32653 -27.90955 -26.54009 -23.70343 -23.19762 -22.17874 -20.95698 -19.88959 -19.05194 -18.25562 -17.96223 -16.90347 -16.10447 -15.78162 -15.39297 -15.29106 -14.87433 -14.63339 -14.05722 -14.00568 -13.41724 -13.36834 -12.89789 -12.78598 -12.29123 -12.13134 -11.93167 -11.85544 -11.66659 -11.61684 -11.29411 -11.05026 -10.96013 -10.92554 -10.84670 -10.67645 -10.46799 -10.27211 -9.35908 -9.33990 -8.70093 -8.35281 -7.69630 -6.12742 -4.19235 1.95085 2.65310 3.17061 3.26492 3.32697 3.35308 3.87415 3.93094 4.19445 4.34332 4.39993 4.80142 4.86110 4.93691 4.96742 5.07580 5.18685 5.23304 5.40960 5.43573 5.45361 5.57436 5.59907 5.64354 5.81531 5.85294 5.96296 6.19979 6.24864 6.32282 6.58414 7.21773 7.54495 7.60065 7.61076 7.64765 7.91354 8.05708 8.78834 8.94003 9.35941 9.51056 10.97569 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.003914 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.929112 B = 7151.949938 C = 7508.084525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.713 3.287 12 O -0.592 6.592 13 N -0.638 5.638 14 C 0.098 3.902 15 C -0.111 4.111 16 C -0.068 4.068 17 C 0.495 3.505 18 O -0.501 6.501 19 O -0.514 6.514 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.127 4.127 23 C 0.172 3.828 24 H 0.100 0.900 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.385 0.615 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.410 0.590 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.655 -19.941 2.291 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.415 3.585 12 O -0.470 6.470 13 N -0.378 5.378 14 C -0.026 4.026 15 C -0.149 4.149 16 C -0.070 4.070 17 C 0.336 3.664 18 O -0.387 6.387 19 O -0.326 6.326 20 C -0.137 4.137 21 C -0.164 4.164 22 C -0.165 4.165 23 C 0.068 3.932 24 H 0.117 0.883 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.218 0.782 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.269 0.731 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.221 -19.610 2.417 22.722 hybrid contribution 1.097 0.820 -0.770 1.571 sum 12.318 -18.789 1.647 22.528 Atomic orbital electron populations 1.69985 1.06079 1.27231 1.48981 1.24938 0.94905 0.99357 0.94788 0.86415 0.79585 0.82696 0.78188 1.20496 1.21014 1.19792 1.21213 0.93219 0.90432 1.53071 0.92026 1.18992 0.87777 0.80990 0.97641 1.45739 1.10817 1.04160 1.77182 1.15628 0.84228 0.80292 0.78361 1.90876 1.13607 1.83719 1.58785 1.47469 1.05108 1.04857 1.80394 1.21945 0.81659 0.97773 1.01233 1.22521 0.97126 0.92276 1.03005 1.21837 0.98019 0.96914 0.90243 1.22946 0.77821 0.75076 0.90548 1.90769 1.48496 1.56824 1.42621 1.84505 1.43807 1.63528 1.40766 1.22388 0.98420 0.96798 0.96123 1.22381 0.95027 0.97402 1.01585 1.22845 1.01983 0.95239 0.96467 1.21987 0.92427 0.79395 0.99435 0.88261 0.92478 0.95734 0.95680 0.78201 0.92077 0.90265 0.88776 0.89113 0.73124 0.89674 0.90961 0.90671 0.91213 0.90676 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.33 5.43 -5.19 -0.03 7.30 16 10 N -0.73 -16.31 5.50 -66.41 -0.37 -16.67 16 11 C 0.71 15.64 8.25 -86.91 -0.72 14.92 16 12 O -0.59 -15.32 16.25 5.29 0.09 -15.24 16 13 N -0.64 -10.65 2.93 -168.52 -0.49 -11.15 16 14 C 0.10 1.21 6.42 -3.35 -0.02 1.19 16 15 C -0.11 -1.01 6.06 -25.71 -0.16 -1.16 16 16 C -0.07 -0.72 0.85 -153.28 -0.13 -0.85 16 17 C 0.49 5.52 6.85 36.00 0.25 5.77 16 18 O -0.50 -7.53 16.27 -18.76 -0.31 -7.84 16 19 O -0.51 -3.89 13.31 -39.26 -0.52 -4.41 16 20 C -0.10 -0.81 6.13 -24.96 -0.15 -0.96 16 21 C -0.13 -1.16 6.85 -25.18 -0.17 -1.33 16 22 C -0.13 -1.68 5.83 -24.79 -0.14 -1.82 16 23 C 0.17 2.52 3.09 -65.84 -0.20 2.32 16 24 H 0.10 1.72 6.94 -51.93 -0.36 1.36 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.39 7.50 6.87 -40.82 -0.28 7.22 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.91 7.48 -51.93 -0.39 0.52 16 31 H 0.09 0.71 7.41 -51.93 -0.38 0.33 16 32 H 0.09 0.67 7.82 -51.93 -0.41 0.26 16 33 H 0.41 1.48 9.10 45.56 0.41 1.90 16 34 H 0.08 0.55 7.32 -51.93 -0.38 0.17 16 35 H 0.07 0.52 7.75 -51.93 -0.40 0.12 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.03 8.06 -51.93 -0.42 0.62 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 322.42 15.07 4.86 4.86 Total: -1.00 -35.74 322.42 -7.60 -43.34 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.68 Total: 4.99 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -1.90 Total: 11.79 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.12 Total: -53.53 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.74 Total: -27.48 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.74 -7.60 -43.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.562 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds