Wall clock time and date at job start Tue Mar 31 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99704 * 2 1 4 4 H 1.48504 * 109.47070 * 269.99861 * 3 2 1 5 5 H 1.48496 * 109.47110 * 29.99840 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00234 * 3 2 1 7 7 C 1.37883 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99902 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99755 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.34769 * 119.99673 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00564 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99497 * 180.02562 * 11 10 9 14 14 C 1.48113 * 127.84253 * 359.96593 * 13 11 10 15 15 C 1.54328 * 104.68798 * 219.77085 * 14 13 11 16 16 H 1.09009 * 111.84997 * 214.54964 * 15 14 13 17 17 C 1.54161 * 108.86335 * 89.54743 * 15 14 13 18 18 C 1.54835 * 104.33346 * 271.19947 * 17 15 14 19 19 C 1.57149 * 102.91339 * 321.71219 * 18 17 15 20 20 C 1.54161 * 103.23096 * 38.19090 * 19 18 17 21 21 C 1.50697 * 111.81994 * 213.14828 * 20 19 18 22 22 O 1.20833 * 119.99747 * 118.62473 * 21 20 19 23 23 O 1.34230 * 120.00262 * 298.34095 * 21 20 19 24 24 C 1.48116 * 127.83778 * 179.97438 * 13 11 10 25 25 H 0.96993 * 120.00065 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47121 * 60.00068 * 9 7 2 27 27 H 1.08998 * 109.47254 * 300.00336 * 9 7 2 28 28 H 0.97004 * 119.99478 * 359.97438 * 10 9 7 29 29 H 1.08994 * 110.39484 * 338.57309 * 14 13 11 30 30 H 1.09008 * 110.39189 * 100.85839 * 14 13 11 31 31 H 1.08996 * 110.46461 * 29.91835 * 17 15 14 32 32 H 1.09007 * 110.46100 * 152.36097 * 17 15 14 33 33 H 1.08996 * 110.75917 * 80.13857 * 18 17 15 34 34 H 1.08997 * 110.76080 * 203.52166 * 18 17 15 35 35 H 1.09004 * 111.51794 * 279.59078 * 19 18 17 36 36 H 1.09000 * 110.44872 * 156.29050 * 19 18 17 37 37 H 0.96699 * 116.99771 * 180.27188 * 23 21 20 38 38 H 1.08998 * 110.39514 * 21.44967 * 24 13 11 39 39 H 1.09003 * 110.39371 * 259.05492 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5586 -5.1055 -0.0011 13 7 2.6298 -5.9077 -0.0005 14 6 4.1093 -5.8382 -0.0001 15 6 4.5544 -6.9662 -0.9547 16 1 5.4860 -7.4292 -0.6291 17 6 4.6436 -6.4014 -2.3863 18 6 3.2218 -6.6004 -2.9662 19 6 2.7968 -7.9963 -2.3827 20 6 3.3772 -7.9733 -0.9548 21 6 3.8099 -9.3446 -0.5039 22 8 4.9674 -9.5520 -0.2262 23 8 2.9084 -10.3342 -0.4053 24 6 2.3312 -7.3584 -0.0004 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 3.1569 -3.4353 -0.0009 29 1 4.4442 -4.8705 -0.3734 30 1 4.4975 -6.0124 1.0035 31 1 4.9008 -5.3424 -2.3629 32 1 5.3768 -6.9577 -2.9704 33 1 2.5497 -5.8155 -2.6194 34 1 3.2499 -6.6331 -4.0554 35 1 3.2276 -8.8172 -2.9560 36 1 1.7105 -8.0811 -2.3513 37 1 3.2326 -11.1954 -0.1080 38 1 1.3235 -7.5388 -0.3744 39 1 2.4443 -7.7694 1.0028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068283.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:36 Heat of formation + Delta-G solvation = -119.887742 kcal Electronic energy + Delta-G solvation = -22954.565798 eV Core-core repulsion = 19475.866771 eV Total energy + Delta-G solvation = -3478.699027 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.41405 -39.63552 -38.11395 -36.35520 -34.24677 -34.11420 -32.32771 -31.16351 -29.64530 -27.24446 -25.67897 -24.62300 -23.06562 -22.24702 -20.83651 -19.56661 -19.16542 -18.23753 -18.05914 -17.25102 -16.06115 -15.88461 -15.47503 -15.28832 -14.57512 -14.45807 -14.34970 -13.77399 -13.46383 -13.21876 -13.17892 -12.89790 -12.15147 -12.04720 -11.87034 -11.79625 -11.77841 -11.32399 -11.19726 -11.02526 -10.96184 -10.90868 -10.86848 -10.79751 -10.53879 -10.29756 -9.44425 -9.37371 -8.74116 -8.49072 -7.76079 -6.15635 -4.22280 1.90078 2.64716 3.14307 3.24695 3.31304 3.33887 3.81935 3.94792 4.28823 4.31036 4.35523 4.84060 4.92829 4.97226 5.02175 5.11350 5.14042 5.20610 5.39282 5.47704 5.56141 5.63507 5.73585 5.75779 5.77680 5.86483 5.95339 6.05043 6.21271 6.27187 6.35779 7.16059 7.48970 7.55890 7.56699 7.62107 7.87420 8.02118 8.74812 8.88214 9.30177 9.46788 10.94589 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031669 B = 0.003926 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.931802 B = 7130.973975 C = 7392.657916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.725 5.725 11 C 0.719 3.281 12 O -0.595 6.595 13 N -0.643 5.643 14 C 0.106 3.894 15 C -0.091 4.091 16 H 0.110 0.890 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.102 4.102 20 C -0.074 4.074 21 C 0.502 3.498 22 O -0.512 6.512 23 O -0.509 6.509 24 C 0.146 3.854 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.409 0.591 38 H 0.096 0.904 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.082 -17.910 -3.547 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.377 5.377 11 C 0.421 3.579 12 O -0.473 6.473 13 N -0.384 5.384 14 C -0.018 4.018 15 C -0.110 4.110 16 H 0.128 0.872 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.139 4.139 20 C -0.076 4.076 21 C 0.344 3.656 22 O -0.400 6.400 23 O -0.321 6.321 24 C 0.021 3.979 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.219 0.781 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.268 0.732 38 H 0.115 0.885 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.062 -17.431 -3.583 19.970 hybrid contribution 1.172 0.325 0.292 1.251 sum 10.234 -17.106 -3.290 20.204 Atomic orbital electron populations 1.69974 1.06087 1.27281 1.48906 1.24933 0.94895 0.99359 0.94741 0.86421 0.79621 0.82692 0.78201 1.20474 1.21012 1.19770 1.21208 0.93233 0.90391 1.53180 0.91991 1.19004 0.87735 0.80953 0.97659 1.45734 1.10898 1.04050 1.77037 1.15546 0.83943 0.80218 0.78188 1.90889 1.13586 1.83689 1.59163 1.47996 1.05571 1.04813 1.79997 1.22429 0.81264 0.99034 0.99050 1.22769 0.97378 0.93858 0.97029 0.87167 1.22397 0.97403 1.01384 0.94131 1.22869 0.96611 0.96453 0.99921 1.22779 1.01354 0.98385 0.91428 1.22029 0.98495 0.88094 0.98996 1.22951 0.83208 0.86525 0.72937 1.90700 1.20086 1.83142 1.46059 1.84573 1.43901 1.23378 1.80226 1.21932 0.98225 0.80267 0.97430 0.92450 0.95670 0.95708 0.78124 0.89765 0.91267 0.90525 0.91336 0.90259 0.91182 0.91153 0.89882 0.73198 0.88546 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.11 5.43 -5.19 -0.03 7.08 16 10 N -0.73 -15.52 5.53 -66.42 -0.37 -15.88 16 11 C 0.72 14.89 8.53 -86.92 -0.74 14.14 16 12 O -0.59 -14.82 16.61 5.29 0.09 -14.74 16 13 N -0.64 -9.92 2.53 -175.12 -0.44 -10.37 16 14 C 0.11 1.26 6.34 -2.46 -0.02 1.25 16 15 C -0.09 -0.96 3.54 -88.31 -0.31 -1.27 16 16 H 0.11 1.15 6.78 -51.92 -0.35 0.80 16 17 C -0.12 -1.15 6.28 -25.16 -0.16 -1.31 16 18 C -0.12 -1.33 6.57 -23.51 -0.15 -1.49 16 19 C -0.10 -1.04 6.01 -23.87 -0.14 -1.19 16 20 C -0.07 -0.80 0.93 -153.33 -0.14 -0.94 16 21 C 0.50 5.25 6.94 36.00 0.25 5.50 16 22 O -0.51 -6.46 16.24 -18.76 -0.30 -6.77 16 23 O -0.51 -4.08 13.41 -39.26 -0.53 -4.61 16 24 C 0.15 1.92 6.04 -2.44 -0.01 1.90 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.39 7.17 6.72 -40.82 -0.27 6.89 16 29 H 0.08 0.96 6.16 -51.93 -0.32 0.64 16 30 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.08 0.76 7.45 -51.93 -0.39 0.37 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.12 7.66 -51.93 -0.40 0.72 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.63 7.95 -51.93 -0.41 0.22 16 36 H 0.08 0.88 7.42 -51.93 -0.39 0.50 16 37 H 0.41 1.45 9.10 45.56 0.41 1.87 16 38 H 0.10 1.36 7.15 -51.93 -0.37 0.99 16 39 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -33.99 320.77 -7.43 -41.42 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.55 Total: 5.24 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -1.88 Total: 10.41 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.07 Total: -51.51 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.74 Total: -26.11 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.99 -7.43 -41.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068283.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.470 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds