Wall clock time and date at job start Tue Mar 31 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 119.99886 * 2 1 4 4 H 1.48492 * 109.47067 * 270.00307 * 3 2 1 5 5 H 1.48505 * 109.46752 * 30.00460 * 3 2 1 6 6 H 1.48501 * 109.46963 * 150.00223 * 3 2 1 7 7 C 1.37878 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99563 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99949 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00002 * 179.97438 * 10 9 7 12 12 O 1.21595 * 120.00125 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00049 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00096 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.78260 * 326.99260 * 14 13 11 16 16 C 1.53624 * 113.52523 * 97.91206 * 14 13 11 17 17 C 1.53729 * 87.51445 * 90.57628 * 16 14 13 18 18 H 1.09001 * 116.74079 * 142.54198 * 17 16 14 19 19 C 1.54687 * 113.40492 * 279.73104 * 17 16 14 20 20 C 1.54886 * 102.82408 * 131.24080 * 19 17 16 21 21 H 1.09002 * 110.59681 * 80.68904 * 20 19 17 22 22 C 1.50701 * 110.48463 * 203.27165 * 20 19 17 23 23 O 1.20822 * 119.99940 * 114.77760 * 22 20 19 24 24 O 1.34235 * 119.99896 * 294.78694 * 22 20 19 25 25 C 1.54240 * 104.20416 * 321.95410 * 20 19 17 26 26 C 1.53819 * 113.52655 * 196.08071 * 14 13 11 27 27 H 1.08996 * 115.63189 * 150.83023 * 26 14 13 28 28 H 0.97001 * 120.00507 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47388 * 59.99501 * 9 7 2 30 30 H 1.09005 * 109.47313 * 299.99132 * 9 7 2 31 31 H 0.97001 * 119.99985 * 359.72526 * 10 9 7 32 32 H 0.96994 * 120.00065 * 0.02562 * 13 11 10 33 33 H 1.09002 * 113.53325 * 205.21698 * 16 14 13 34 34 H 1.08994 * 113.53257 * 335.85851 * 16 14 13 35 35 H 1.09001 * 110.74231 * 12.90517 * 19 17 16 36 36 H 1.09002 * 110.89722 * 249.64396 * 19 17 16 37 37 H 0.96701 * 116.99318 * 180.02562 * 24 22 20 38 38 H 1.08998 * 110.01278 * 264.33425 * 25 20 19 39 39 H 1.08997 * 110.05603 * 142.95611 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 5.3249 -2.8215 -0.0020 12 8 6.1151 -1.8973 -0.0025 13 7 5.7742 -4.0921 -0.0013 14 6 7.2145 -4.3598 -0.0018 15 1 7.7832 -3.6087 -0.5501 16 6 7.7826 -4.6616 1.3932 17 6 7.4940 -6.1459 1.1163 18 1 8.2222 -6.8653 1.4908 19 6 6.0142 -6.5365 1.3411 20 6 5.6640 -7.3149 0.0487 21 1 6.0238 -8.3420 0.1103 22 6 4.1769 -7.2921 -0.1941 23 8 3.7315 -6.7225 -1.1622 24 8 3.3470 -7.9043 0.6652 25 6 6.4049 -6.5495 -1.0667 26 6 7.5704 -5.8046 -0.3917 27 1 8.5372 -5.9374 -0.8772 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6802 0.8888 30 1 3.8745 -0.6800 -0.8912 31 1 3.3695 -3.3125 0.0034 32 1 5.1439 -4.8294 -0.0006 33 1 8.8446 -4.4353 1.4890 34 1 7.1865 -4.2452 2.2052 35 1 5.3907 -5.6476 1.4374 36 1 5.9098 -7.1763 2.2174 37 1 2.4014 -7.8628 0.4672 38 1 5.7308 -5.8362 -1.5408 39 1 6.7892 -7.2494 -1.8086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:05 Heat of formation + Delta-G solvation = -95.918454 kcal Electronic energy + Delta-G solvation = -22941.765051 eV Core-core repulsion = 19464.105410 eV Total energy + Delta-G solvation = -3477.659640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.73585 -39.99993 -38.62082 -36.34126 -34.32055 -33.70857 -32.71210 -31.99714 -29.31178 -27.75561 -26.10435 -23.58852 -22.89340 -21.79208 -20.69814 -19.99914 -18.91268 -18.49941 -18.05653 -16.92454 -16.58979 -16.10942 -15.77431 -15.59647 -14.78355 -14.42521 -14.23923 -14.05224 -13.66151 -13.33408 -13.05185 -12.88957 -12.52968 -12.30403 -12.09304 -11.88121 -11.71813 -11.56808 -11.35791 -10.99380 -10.90984 -10.72989 -10.58836 -10.41362 -10.24608 -9.92484 -9.53937 -9.40721 -8.77977 -8.69702 -7.97200 -6.16759 -4.18311 1.96228 2.77943 3.23286 3.31550 3.38257 3.46657 3.79309 3.86381 4.19139 4.33273 4.38052 4.69850 4.76427 4.84879 4.97229 5.07392 5.09621 5.14406 5.18850 5.23180 5.39402 5.51682 5.65493 5.68289 5.83037 5.89049 6.00085 6.02793 6.20312 6.31943 6.77912 6.88504 7.16344 7.28349 7.45234 7.59530 7.68070 8.32481 8.72786 8.85471 9.25001 9.44883 10.95322 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019661 B = 0.004839 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.824869 B = 5785.043626 C = 6801.972666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.238 3.762 10 N -0.723 5.723 11 C 0.695 3.305 12 O -0.601 6.601 13 N -0.740 5.740 14 C 0.150 3.850 15 H 0.099 0.901 16 C -0.144 4.144 17 C -0.111 4.111 18 H 0.095 0.905 19 C -0.111 4.111 20 C -0.089 4.089 21 H 0.116 0.884 22 C 0.476 3.524 23 O -0.503 6.503 24 O -0.515 6.515 25 C -0.120 4.120 26 C -0.120 4.120 27 H 0.114 0.886 28 H 0.267 0.733 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.391 0.609 32 H 0.393 0.607 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.413 0.587 38 H 0.094 0.906 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.179 -18.883 2.183 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.116 3.884 10 N -0.374 5.374 11 C 0.394 3.606 12 O -0.480 6.480 13 N -0.399 5.399 14 C 0.043 3.957 15 H 0.117 0.883 16 C -0.183 4.183 17 C -0.129 4.129 18 H 0.113 0.887 19 C -0.148 4.148 20 C -0.108 4.108 21 H 0.134 0.866 22 C 0.317 3.683 23 O -0.390 6.390 24 O -0.327 6.327 25 C -0.157 4.157 26 C -0.139 4.139 27 H 0.132 0.868 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.224 0.776 32 H 0.231 0.769 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.272 0.728 38 H 0.113 0.887 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.970 -17.708 1.980 23.273 hybrid contribution -1.018 0.088 -0.195 1.040 sum 13.953 -17.620 1.784 22.546 Atomic orbital electron populations 1.69881 1.06209 1.27359 1.49691 1.24776 0.94781 0.99129 0.93912 0.86809 0.80596 0.83176 0.79066 1.19844 1.20953 1.18433 1.21101 0.88591 0.95186 1.53049 0.90361 1.19365 0.94823 0.77585 0.96648 1.45414 1.03721 1.11045 1.77261 1.16141 0.83564 0.82727 0.78123 1.90854 1.55303 1.43141 1.58744 1.45278 1.06645 1.06674 1.81299 1.21517 0.81557 0.96016 0.96583 0.88327 1.23321 1.01749 0.94483 0.98754 1.23291 0.96044 0.97537 0.96065 0.88725 1.22580 0.96250 1.00329 0.95685 1.21981 0.86956 1.03375 0.98452 0.86586 1.23437 0.90423 0.74689 0.79710 1.90795 1.78225 1.40900 1.29116 1.84510 1.23629 1.71348 1.53247 1.22172 0.97287 0.99711 0.96550 1.23712 0.99178 0.95243 0.95740 0.86773 0.92315 0.95879 0.96312 0.77628 0.76940 0.89085 0.90657 0.89762 0.89676 0.72754 0.88719 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.54 -15.40 9.83 -34.44 -0.34 -15.74 16 8 H 0.08 2.32 7.84 -52.49 -0.41 1.91 16 9 C 0.24 6.18 4.50 -5.19 -0.02 6.16 16 10 N -0.72 -16.00 5.55 -66.41 -0.37 -16.37 16 11 C 0.69 14.53 8.57 -86.92 -0.74 13.78 16 12 O -0.60 -14.62 16.07 5.28 0.08 -14.53 16 13 N -0.74 -11.58 3.68 -57.94 -0.21 -11.80 16 14 C 0.15 1.91 4.04 -67.18 -0.27 1.64 16 15 H 0.10 1.41 7.70 -51.93 -0.40 1.01 16 16 C -0.14 -1.51 7.41 -26.03 -0.19 -1.70 16 17 C -0.11 -0.90 4.97 -88.40 -0.44 -1.34 16 18 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 19 C -0.11 -0.97 5.40 -24.85 -0.13 -1.10 16 20 C -0.09 -0.75 3.17 -90.13 -0.29 -1.04 16 21 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 22 C 0.48 5.07 6.97 36.01 0.25 5.32 16 23 O -0.50 -7.16 15.96 -18.75 -0.30 -7.46 16 24 O -0.52 -4.41 13.42 -39.27 -0.53 -4.94 16 25 C -0.12 -1.13 5.28 -25.61 -0.14 -1.26 16 26 C -0.12 -1.06 4.91 -88.77 -0.44 -1.50 16 27 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 30 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 31 H 0.39 7.95 8.34 -40.82 -0.34 7.61 16 32 H 0.39 5.62 3.84 -40.82 -0.16 5.47 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.94 5.33 -51.93 -0.28 0.66 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.41 2.20 9.10 45.56 0.41 2.61 16 38 H 0.09 1.19 5.39 -51.93 -0.28 0.91 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -35.46 315.01 -7.66 -43.13 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -4.34 Total: 10.83 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.85 Total: 5.37 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.19 Total: -54.46 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.74 Total: -26.93 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.46 -7.66 -43.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.793 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds