Wall clock time and date at job start Tue Mar 31 2020 05:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00006 * 2 1 4 4 H 1.48501 * 109.46828 * 273.15926 * 3 2 1 5 5 H 1.48498 * 109.46779 * 33.15625 * 3 2 1 6 6 H 1.48491 * 109.47207 * 153.16005 * 3 2 1 7 7 C 1.37878 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00206 * 1.87485 * 7 2 1 9 9 C 1.50701 * 120.00176 * 181.88166 * 7 2 1 10 10 C 1.52997 * 115.55512 * 91.06944 * 9 7 2 11 11 N 1.46499 * 109.47003 * 65.22988 * 10 9 7 12 12 C 1.34776 * 119.99872 * 185.21910 * 11 10 9 13 13 O 1.21588 * 120.00428 * 4.85320 * 12 11 10 14 14 N 1.34781 * 119.99961 * 184.85311 * 12 11 10 15 15 C 1.46494 * 119.99873 * 175.35506 * 14 12 11 16 16 H 1.09002 * 112.85701 * 336.19544 * 15 14 12 17 17 C 1.53782 * 113.69151 * 107.46839 * 15 14 12 18 18 C 1.54046 * 87.07866 * 139.98771 * 17 15 14 19 19 H 1.08996 * 113.61443 * 89.07491 * 18 17 15 20 20 C 1.50707 * 113.69417 * 220.05210 * 18 17 15 21 21 O 1.20828 * 119.99562 * 97.42322 * 20 18 17 22 22 O 1.34228 * 119.99977 * 277.42377 * 20 18 17 23 23 C 1.53781 * 86.98740 * 334.57085 * 18 17 15 24 24 C 1.53004 * 117.49837 * 236.74323 * 9 7 2 25 25 C 1.53003 * 117.49641 * 305.39829 * 9 7 2 26 26 H 0.97001 * 120.00339 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46878 * 305.23318 * 10 9 7 28 28 H 1.09003 * 109.47499 * 185.23598 * 10 9 7 29 29 H 0.97000 * 120.00217 * 5.22348 * 11 10 9 30 30 H 0.97002 * 119.99955 * 355.36164 * 14 12 11 31 31 H 1.08998 * 113.61469 * 254.53835 * 17 15 14 32 32 H 1.08997 * 113.61270 * 25.43898 * 17 15 14 33 33 H 0.96701 * 116.99740 * 180.02562 * 22 20 18 34 34 H 1.09002 * 113.60933 * 270.83972 * 23 18 17 35 35 H 1.08997 * 113.61590 * 140.02218 * 23 18 17 36 36 H 1.09002 * 117.49660 * 215.00400 * 24 9 7 37 37 H 1.09001 * 117.49800 * 0.02562 * 24 9 7 38 38 H 1.09002 * 117.49645 * 359.97438 * 25 9 7 39 39 H 1.09002 * 117.50124 * 144.97361 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4298 2.0850 -1.3980 5 1 1.4815 2.6325 0.7657 6 1 3.5784 1.4219 0.6321 7 6 2.0045 -1.1940 0.0005 8 1 1.4650 -2.1292 -0.0296 9 6 3.5109 -1.1944 0.0434 10 6 4.1314 -1.2423 1.4411 11 7 3.8014 -2.5195 2.0783 12 6 4.1541 -2.7443 3.3595 13 8 4.6667 -1.8569 4.0137 14 7 3.9384 -3.9530 3.9156 15 6 4.4131 -4.2295 5.2737 16 1 5.2446 -3.5900 5.5700 17 6 3.2875 -4.3004 6.3192 18 6 4.0478 -5.4867 6.9418 19 1 4.7796 -5.1903 7.6933 20 6 3.1502 -6.6048 7.4060 21 8 2.9696 -7.5677 6.6988 22 8 2.5515 -6.5309 8.6051 23 6 4.6560 -5.7228 5.5492 24 6 4.2495 -1.9206 -1.0827 25 6 4.2483 -0.3908 -1.0297 26 1 -0.4851 0.8400 -0.0004 27 1 3.7362 -0.4235 2.0423 28 1 5.2142 -1.1449 1.3615 29 1 3.3292 -3.2034 1.5781 30 1 3.4691 -4.6397 3.4166 31 1 3.2376 -3.4253 6.9671 32 1 2.3191 -4.5739 5.9003 33 1 1.9853 -7.2724 8.8595 34 1 4.0617 -6.3853 4.9199 35 1 5.7109 -5.9963 5.5741 36 1 5.1774 -2.4325 -0.8277 37 1 3.6459 -2.3977 -1.8548 38 1 3.6438 0.1377 -1.7669 39 1 5.1752 0.1041 -0.7398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605582016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:51 Heat of formation + Delta-G solvation = -77.047943 kcal Electronic energy + Delta-G solvation = -21815.123137 eV Core-core repulsion = 18338.281783 eV Total energy + Delta-G solvation = -3476.841354 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00354 -39.66131 -38.22209 -37.02195 -36.30872 -33.51175 -32.93874 -32.11020 -27.41147 -26.22358 -25.99387 -25.00670 -22.16166 -21.76829 -20.48617 -19.85539 -19.29901 -18.44726 -17.74730 -17.35312 -16.40258 -16.06242 -15.47749 -15.36716 -15.06540 -14.64921 -14.25498 -14.01454 -13.36360 -13.19024 -12.91480 -12.77160 -12.66152 -12.43292 -11.99842 -11.86423 -11.62532 -11.44235 -11.16051 -10.99091 -10.88472 -10.62753 -10.46332 -10.18072 -9.83684 -9.56126 -9.17422 -8.94815 -8.64710 -8.57212 -8.18957 -6.15283 -4.19836 1.88844 2.67593 3.17365 3.28891 3.40182 3.46106 3.59038 4.05757 4.15897 4.40717 4.57521 4.62063 4.64566 4.99538 5.05659 5.14589 5.32600 5.38796 5.46834 5.62851 5.68120 5.73131 6.00414 6.02374 6.05767 6.19651 6.25401 6.40820 6.48105 6.68350 6.68911 6.99191 7.09077 7.16717 7.39418 7.60167 7.68146 8.41100 8.51274 8.84362 9.05973 9.47764 10.96101 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026157 B = 0.003408 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.183724 B = 8212.881023 C = 8512.760105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.079 3.921 3 Si 0.881 3.119 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.256 1.256 7 C -0.490 4.490 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.176 3.824 11 N -0.719 5.719 12 C 0.701 3.299 13 O -0.602 6.602 14 N -0.741 5.741 15 C 0.151 3.849 16 H 0.121 0.879 17 C -0.136 4.136 18 C -0.111 4.111 19 H 0.129 0.871 20 C 0.491 3.509 21 O -0.515 6.515 22 O -0.515 6.515 23 C -0.128 4.128 24 C -0.180 4.180 25 C -0.192 4.192 26 H 0.265 0.735 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.399 0.601 30 H 0.397 0.603 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.409 0.591 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.470 -11.651 12.341 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.124 4.124 3 Si 0.710 3.290 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.180 1.180 7 C -0.527 4.527 8 H 0.095 0.905 9 C -0.016 4.016 10 C 0.052 3.948 11 N -0.371 5.371 12 C 0.401 3.599 13 O -0.482 6.482 14 N -0.396 5.396 15 C 0.044 3.956 16 H 0.139 0.861 17 C -0.175 4.175 18 C -0.130 4.130 19 H 0.147 0.853 20 C 0.334 3.666 21 O -0.403 6.403 22 O -0.327 6.327 23 C -0.166 4.166 24 C -0.218 4.218 25 C -0.230 4.230 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.233 0.767 30 H 0.231 0.769 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.267 0.733 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.007 -10.615 12.580 18.763 hybrid contribution -0.612 -0.220 -0.273 0.705 sum 8.395 -10.836 12.307 18.422 Atomic orbital electron populations 1.69884 1.06414 1.27251 1.49703 1.24990 0.94614 0.99203 0.93622 0.86820 0.80857 0.83238 0.78131 1.20646 1.22206 1.17960 1.20171 0.86135 0.94493 1.51882 0.90460 1.19645 0.95089 1.00596 0.86238 1.20961 0.96311 0.84053 0.93448 1.44998 1.61533 1.19777 1.10812 1.16036 0.79320 0.82486 0.82051 1.90869 1.51271 1.43649 1.62401 1.45036 1.63490 1.14516 1.16515 1.22103 0.96991 0.95359 0.81153 0.86147 1.23574 0.99436 0.96375 0.98162 1.22347 0.98135 0.93991 0.98566 0.85317 1.23291 0.78125 0.86988 0.78235 1.90724 1.60620 1.33686 1.55280 1.84560 1.60388 1.51098 1.36629 1.23412 1.02405 0.97234 0.93568 1.22890 1.01211 0.93768 1.03909 1.22928 1.01552 0.94139 1.04402 0.92504 0.91774 0.94242 0.76669 0.76861 0.89374 0.89034 0.73255 0.88019 0.89621 0.90886 0.89439 0.89248 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.47 24.76 -169.99 -4.21 17.26 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -5.95 6.03 56.52 0.34 -5.61 16 7 C -0.49 -12.84 9.34 -34.44 -0.32 -13.17 16 8 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 9 C -0.01 -0.31 0.83 -155.66 -0.13 -0.44 16 10 C 0.18 3.69 5.28 -4.04 -0.02 3.67 16 11 N -0.72 -13.17 5.46 -65.22 -0.36 -13.53 16 12 C 0.70 12.51 8.55 -86.92 -0.74 11.76 16 13 O -0.60 -12.91 15.96 5.29 0.08 -12.82 16 14 N -0.74 -9.66 5.36 -57.88 -0.31 -9.97 16 15 C 0.15 1.63 4.21 -67.12 -0.28 1.35 16 16 H 0.12 1.41 7.52 -51.93 -0.39 1.02 16 17 C -0.14 -1.33 7.44 -25.78 -0.19 -1.52 16 18 C -0.11 -0.89 4.27 -90.82 -0.39 -1.28 16 19 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 20 C 0.49 4.62 7.86 36.01 0.28 4.90 16 21 O -0.52 -6.37 16.66 -18.75 -0.31 -6.69 16 22 O -0.52 -3.80 13.42 -39.25 -0.53 -4.32 16 23 C -0.13 -1.09 7.15 -25.92 -0.19 -1.27 16 24 C -0.18 -3.40 9.96 -26.69 -0.27 -3.67 16 25 C -0.19 -3.92 7.16 -26.69 -0.19 -4.11 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.06 1.51 7.62 -51.93 -0.40 1.12 16 28 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 29 H 0.40 6.69 8.48 -40.82 -0.35 6.34 16 30 H 0.40 4.33 8.75 -40.82 -0.36 3.97 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.41 1.36 9.10 45.56 0.41 1.78 16 34 H 0.10 0.94 7.41 -51.93 -0.38 0.56 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.09 1.92 6.63 -51.93 -0.34 1.57 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -34.07 330.27 -7.21 -41.28 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -4.80 Total: 11.33 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.54 Total: -1.69 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.11 Total: -49.32 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.75 Total: -23.83 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.21 Total: 17.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.07 -7.21 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.768 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds