Wall clock time and date at job start Tue Mar 31 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00006 * 2 1 4 4 H 1.48501 * 109.46828 * 273.15926 * 3 2 1 5 5 H 1.48498 * 109.46779 * 33.15625 * 3 2 1 6 6 H 1.48491 * 109.47207 * 153.16005 * 3 2 1 7 7 C 1.37878 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00206 * 1.87485 * 7 2 1 9 9 C 1.50701 * 120.00176 * 181.88166 * 7 2 1 10 10 C 1.52997 * 115.55512 * 91.06944 * 9 7 2 11 11 N 1.46499 * 109.47003 * 65.22988 * 10 9 7 12 12 C 1.34776 * 119.99872 * 185.21910 * 11 10 9 13 13 O 1.21588 * 120.00428 * 4.85320 * 12 11 10 14 14 N 1.34781 * 119.99961 * 184.85311 * 12 11 10 15 15 C 1.46494 * 119.99873 * 175.35506 * 14 12 11 16 16 H 1.09002 * 112.85701 * 336.19544 * 15 14 12 17 17 C 1.53782 * 113.69151 * 107.46839 * 15 14 12 18 18 C 1.54046 * 87.07866 * 139.98771 * 17 15 14 19 19 H 1.08996 * 113.61443 * 89.07491 * 18 17 15 20 20 C 1.50707 * 113.69417 * 220.05210 * 18 17 15 21 21 O 1.20828 * 119.99562 * 97.42322 * 20 18 17 22 22 O 1.34228 * 119.99977 * 277.42377 * 20 18 17 23 23 C 1.53781 * 86.98740 * 334.57085 * 18 17 15 24 24 C 1.53004 * 117.49837 * 236.74323 * 9 7 2 25 25 C 1.53003 * 117.49641 * 305.39829 * 9 7 2 26 26 H 0.97001 * 120.00339 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46878 * 305.23318 * 10 9 7 28 28 H 1.09003 * 109.47499 * 185.23598 * 10 9 7 29 29 H 0.97000 * 120.00217 * 5.22348 * 11 10 9 30 30 H 0.97002 * 119.99955 * 355.36164 * 14 12 11 31 31 H 1.08998 * 113.61469 * 254.53835 * 17 15 14 32 32 H 1.08997 * 113.61270 * 25.43898 * 17 15 14 33 33 H 0.96701 * 116.99740 * 180.02562 * 22 20 18 34 34 H 1.09002 * 113.60933 * 270.83972 * 23 18 17 35 35 H 1.08997 * 113.61590 * 140.02218 * 23 18 17 36 36 H 1.09002 * 117.49660 * 215.00400 * 24 9 7 37 37 H 1.09001 * 117.49800 * 0.02562 * 24 9 7 38 38 H 1.09002 * 117.49645 * 359.97438 * 25 9 7 39 39 H 1.09002 * 117.50124 * 144.97361 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4298 2.0850 -1.3980 5 1 1.4815 2.6325 0.7657 6 1 3.5784 1.4219 0.6321 7 6 2.0045 -1.1940 0.0005 8 1 1.4650 -2.1292 -0.0296 9 6 3.5109 -1.1944 0.0434 10 6 4.1314 -1.2423 1.4411 11 7 3.8014 -2.5195 2.0783 12 6 4.1541 -2.7443 3.3595 13 8 4.6667 -1.8569 4.0137 14 7 3.9384 -3.9530 3.9156 15 6 4.4131 -4.2295 5.2737 16 1 5.2446 -3.5900 5.5700 17 6 3.2875 -4.3004 6.3192 18 6 4.0478 -5.4867 6.9418 19 1 4.7796 -5.1903 7.6933 20 6 3.1502 -6.6048 7.4060 21 8 2.9696 -7.5677 6.6988 22 8 2.5515 -6.5309 8.6051 23 6 4.6560 -5.7228 5.5492 24 6 4.2495 -1.9206 -1.0827 25 6 4.2483 -0.3908 -1.0297 26 1 -0.4851 0.8400 -0.0004 27 1 3.7362 -0.4235 2.0423 28 1 5.2142 -1.1449 1.3615 29 1 3.3292 -3.2034 1.5781 30 1 3.4691 -4.6397 3.4166 31 1 3.2376 -3.4253 6.9671 32 1 2.3191 -4.5739 5.9003 33 1 1.9853 -7.2724 8.8595 34 1 4.0617 -6.3853 4.9199 35 1 5.7109 -5.9963 5.5741 36 1 5.1774 -2.4325 -0.8277 37 1 3.6459 -2.3977 -1.8548 38 1 3.6438 0.1377 -1.7669 39 1 5.1752 0.1041 -0.7398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605582016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:50 Heat of formation + Delta-G solvation = -103.531437 kcal Electronic energy + Delta-G solvation = -21816.271548 eV Core-core repulsion = 18338.281783 eV Total energy + Delta-G solvation = -3477.989764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.80699 -40.88112 -39.29255 -38.53613 -37.03778 -35.01192 -34.27745 -34.05133 -28.66963 -27.72357 -26.77093 -26.61741 -23.43321 -22.98059 -21.74266 -21.06185 -20.67034 -19.20424 -19.14102 -18.32890 -18.04372 -16.98668 -16.81067 -16.62658 -16.44488 -15.88216 -15.61738 -15.30750 -14.85996 -14.69084 -14.36895 -14.05804 -13.79606 -13.54584 -13.36528 -13.07440 -12.73349 -12.57995 -12.42848 -12.25620 -12.14413 -11.95289 -11.75403 -11.54693 -11.40519 -11.26489 -10.97956 -10.60926 -10.34583 -10.19279 -9.60419 -8.28869 -6.35076 1.15952 1.34605 1.41731 1.52584 1.77128 2.20329 2.23986 2.38155 3.07016 3.15955 3.33884 3.40200 3.57416 3.79647 3.92891 4.06328 4.38985 4.44461 4.44639 4.55515 4.57233 4.65437 4.70938 4.84015 4.88099 4.92132 4.98746 5.12102 5.19687 5.34199 5.51351 5.59443 5.63665 5.69539 5.72181 6.13701 6.29297 6.73301 6.99858 7.20126 7.35415 7.67648 8.85905 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026157 B = 0.003408 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.183724 B = 8212.881023 C = 8512.760105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.022 3.978 3 Si 0.933 3.067 4 H -0.269 1.269 5 H -0.306 1.306 6 H -0.237 1.237 7 C -0.478 4.478 8 H 0.043 0.957 9 C -0.039 4.039 10 C 0.186 3.814 11 N -0.720 5.720 12 C 0.699 3.301 13 O -0.640 6.640 14 N -0.725 5.725 15 C 0.139 3.861 16 H 0.114 0.886 17 C -0.137 4.137 18 C -0.100 4.100 19 H 0.156 0.844 20 C 0.495 3.505 21 O -0.549 6.549 22 O -0.512 6.512 23 C -0.115 4.115 24 C -0.152 4.152 25 C -0.193 4.193 26 H 0.264 0.736 27 H 0.031 0.969 28 H 0.057 0.943 29 H 0.406 0.594 30 H 0.409 0.591 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.426 0.574 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 -12.407 12.900 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.234 1.234 6 H -0.160 1.160 7 C -0.515 4.515 8 H 0.062 0.938 9 C -0.040 4.040 10 C 0.061 3.939 11 N -0.373 5.373 12 C 0.398 3.602 13 O -0.522 6.522 14 N -0.380 5.380 15 C 0.034 3.966 16 H 0.132 0.868 17 C -0.176 4.176 18 C -0.119 4.119 19 H 0.174 0.826 20 C 0.339 3.661 21 O -0.440 6.440 22 O -0.326 6.326 23 C -0.154 4.154 24 C -0.189 4.189 25 C -0.231 4.231 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.241 0.759 30 H 0.245 0.755 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.288 0.712 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.331 -11.434 13.158 20.791 hybrid contribution -1.391 -0.109 -0.385 1.447 sum 9.940 -11.543 12.773 19.880 Atomic orbital electron populations 1.70022 1.08172 1.27851 1.52620 1.25768 0.95157 1.02674 0.93980 0.85981 0.80317 0.79184 0.78599 1.19404 1.23402 1.15958 1.20375 0.88784 0.92828 1.49540 0.93835 1.19464 0.92622 1.04208 0.87737 1.20673 0.96882 0.84144 0.92163 1.44911 1.61874 1.19226 1.11266 1.16193 0.78981 0.83322 0.81658 1.90838 1.53008 1.45220 1.63144 1.44977 1.62605 1.13116 1.17313 1.22342 0.97292 0.97035 0.79962 0.86766 1.23516 0.98822 0.97287 0.97988 1.22373 0.97955 0.92588 0.99015 0.82631 1.23445 0.77756 0.86608 0.78258 1.90719 1.61833 1.35116 1.56298 1.84523 1.60391 1.52064 1.35576 1.23319 1.03567 0.94939 0.93536 1.22913 1.01519 0.93129 1.01307 1.23013 1.01907 0.95317 1.02847 0.92760 0.95037 0.92503 0.75893 0.75528 0.89398 0.89959 0.71211 0.88682 0.87679 0.87636 0.89712 0.90466 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.06 13.96 21.45 0.30 -57.76 16 2 C 0.02 1.23 5.47 84.66 0.46 1.70 16 3 Si 0.93 44.29 24.76 68.60 1.70 45.99 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16 6 H -0.24 -10.40 6.03 99.48 0.60 -9.80 16 7 C -0.48 -25.34 9.34 25.60 0.24 -25.10 16 8 H 0.04 2.54 8.06 -2.91 -0.02 2.51 16 9 C -0.04 -1.65 0.83 -52.93 -0.04 -1.69 16 10 C 0.19 7.54 5.28 86.38 0.46 8.00 16 11 N -0.72 -25.74 5.46 -478.53 -2.61 -28.35 16 12 C 0.70 24.39 8.55 179.05 1.53 25.92 16 13 O -0.64 -27.13 15.96 -3.99 -0.06 -27.19 16 14 N -0.73 -18.15 5.36 -455.29 -2.44 -20.60 16 15 C 0.14 2.81 4.21 45.52 0.19 3.00 16 16 H 0.11 2.52 7.52 -2.39 -0.02 2.50 16 17 C -0.14 -2.50 7.44 31.21 0.23 -2.27 16 18 C -0.10 -1.39 4.27 -10.92 -0.05 -1.43 16 19 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 20 C 0.50 8.40 7.86 71.24 0.56 8.96 16 21 O -0.55 -12.88 16.66 21.96 0.37 -12.52 16 22 O -0.51 -6.47 13.42 -51.40 -0.69 -7.16 16 23 C -0.12 -1.71 7.15 31.12 0.22 -1.49 16 24 C -0.15 -5.25 9.96 30.62 0.30 -4.94 16 25 C -0.19 -7.30 7.16 30.62 0.22 -7.08 16 26 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.03 1.47 7.62 -2.38 -0.02 1.45 16 28 H 0.06 2.11 8.09 -2.39 -0.02 2.09 16 29 H 0.41 13.28 8.48 -92.71 -0.79 12.49 16 30 H 0.41 8.42 8.75 -92.71 -0.81 7.61 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 33 H 0.43 2.00 9.10 -74.06 -0.67 1.33 16 34 H 0.09 1.60 7.41 -2.39 -0.02 1.58 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.08 3.12 6.63 -2.39 -0.02 3.11 16 39 H 0.10 3.33 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -74.80 330.27 -0.39 -75.19 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -1.28 Total: 28.80 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 4.33 Total: 3.59 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -4.76 Total: -106.71 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -0.39 Total: -46.87 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.70 Total: 45.99 kcal Total: -74.80 -0.39 -75.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.343 kcal (2) G-P(sol) polarization free energy of solvation -74.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds