Wall clock time and date at job start Tue Mar 31 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47245 * 269.99543 * 3 2 1 5 5 H 1.48496 * 109.47352 * 29.99895 * 3 2 1 6 6 H 1.48507 * 109.46896 * 149.99633 * 3 2 1 7 7 C 1.37874 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00216 * 169.79400 * 7 2 1 9 9 C 1.50706 * 120.00263 * 349.79611 * 7 2 1 10 10 C 1.53000 * 115.54900 * 324.22969 * 9 7 2 11 11 N 1.46498 * 109.46948 * 306.81339 * 10 9 7 12 12 C 1.34778 * 119.99857 * 174.97466 * 11 10 9 13 13 O 1.21589 * 120.00377 * 5.14975 * 12 11 10 14 14 N 1.34780 * 120.00187 * 185.14630 * 12 11 10 15 15 C 1.47023 * 125.64450 * 354.59820 * 14 12 11 16 16 C 1.54316 * 107.27756 * 180.96856 * 15 14 12 17 17 C 1.55162 * 102.85987 * 22.52328 * 16 15 14 18 18 H 1.08999 * 111.00503 * 82.37925 * 17 16 15 19 19 C 1.50699 * 111.03564 * 206.21477 * 17 16 15 20 20 O 1.20819 * 120.00338 * 353.67194 * 19 17 16 21 21 O 1.34233 * 119.99587 * 173.66764 * 19 17 16 22 22 C 1.47425 * 125.65122 * 174.90666 * 14 12 11 23 23 C 1.53004 * 117.49875 * 109.89509 * 9 7 2 24 24 C 1.52997 * 117.49999 * 178.55874 * 9 7 2 25 25 H 0.97001 * 120.00444 * 5.04991 * 1 2 3 26 26 H 1.08996 * 109.47201 * 186.80988 * 10 9 7 27 27 H 1.09008 * 109.47138 * 66.80997 * 10 9 7 28 28 H 0.96999 * 120.00187 * 354.97744 * 11 10 9 29 29 H 1.09000 * 109.88304 * 300.51300 * 15 14 12 30 30 H 1.08997 * 109.88470 * 61.67879 * 15 14 12 31 31 H 1.09000 * 110.92422 * 264.11126 * 16 15 14 32 32 H 1.08993 * 110.74959 * 140.85292 * 16 15 14 33 33 H 0.96706 * 116.99821 * 179.97438 * 21 19 17 34 34 H 1.08994 * 110.36106 * 274.67289 * 22 14 12 35 35 H 1.08995 * 110.36644 * 36.88667 * 22 14 12 36 36 H 1.09000 * 117.49810 * 215.00420 * 23 9 7 37 37 H 1.08997 * 117.49574 * 0.02667 * 23 9 7 38 38 H 1.08996 * 117.49797 * 359.97438 * 24 9 7 39 39 H 1.09003 * 117.49568 * 145.00067 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0717 -1.2015 -0.1652 9 6 1.2690 -2.4888 0.2323 10 6 0.1084 -2.4194 1.2269 11 7 0.5786 -1.8371 2.4862 12 6 -0.2963 -1.5834 3.4795 13 8 -1.4584 -1.9230 3.3676 14 7 0.1169 -0.9533 4.5970 15 6 1.5063 -0.5894 4.9114 16 6 1.5000 0.0881 6.2979 17 6 0.1920 -0.4473 6.9380 18 1 0.3453 -1.4354 7.3720 19 6 -0.3395 0.5154 7.9685 20 8 0.3074 1.4881 8.2769 21 8 -1.5317 0.2923 8.5435 22 6 -0.7485 -0.5205 5.7093 23 6 1.1252 -3.4421 -0.9558 24 6 2.0846 -3.7825 0.1875 25 1 -0.4851 0.8368 -0.0739 26 1 -0.2729 -3.4238 1.4109 27 1 -0.6871 -1.7987 0.8143 28 1 1.5197 -1.6341 2.6052 29 1 2.1273 -1.4849 4.9372 30 1 1.8859 0.1060 4.1629 31 1 1.4657 1.1733 6.2007 32 1 2.3683 -0.2181 6.8812 33 1 -1.8305 0.9374 9.1991 34 1 -1.1745 0.4604 5.4987 35 1 -1.5411 -1.2491 5.8789 36 1 0.2038 -4.0198 -1.0288 37 1 1.5630 -3.1329 -1.9049 38 1 3.1531 -3.6972 -0.0100 39 1 1.7942 -4.5842 0.8666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608177982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:15 Heat of formation + Delta-G solvation = -90.135744 kcal Electronic energy + Delta-G solvation = -22713.360098 eV Core-core repulsion = 19235.951214 eV Total energy + Delta-G solvation = -3477.408883 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76757 -39.43873 -37.40755 -36.52177 -36.21182 -33.11637 -32.19133 -31.46799 -29.32629 -26.25933 -25.42555 -23.87113 -22.81892 -21.22093 -20.53228 -19.26474 -19.22965 -18.30407 -17.74114 -17.21053 -16.31693 -15.80064 -15.26208 -15.08554 -14.74856 -14.26262 -13.95086 -13.61806 -13.42417 -13.11320 -12.87064 -12.66462 -12.40279 -11.85316 -11.77621 -11.61647 -11.51054 -11.48467 -11.07077 -11.02616 -10.77909 -10.75379 -10.52378 -10.26719 -9.70108 -9.33064 -9.13122 -8.80946 -8.42314 -8.21240 -7.72929 -6.06339 -4.16832 1.91748 2.68130 3.19644 3.23746 3.29910 3.30270 3.95335 4.09992 4.28855 4.44238 4.75403 4.78286 5.04723 5.09960 5.18115 5.20282 5.49656 5.62534 5.74213 5.78874 5.86184 6.00063 6.02518 6.23775 6.31322 6.48165 6.55487 6.62055 6.72605 6.91131 7.06627 7.28078 7.51915 7.62868 7.64968 7.71565 7.93948 8.32583 8.74573 8.87534 9.39386 9.44382 10.90647 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019499 B = 0.004957 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.606861 B = 5647.241920 C = 6362.795874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.078 3.922 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.039 3.961 10 C 0.180 3.820 11 N -0.702 5.702 12 C 0.721 3.279 13 O -0.601 6.601 14 N -0.645 5.645 15 C 0.100 3.900 16 C -0.112 4.112 17 C -0.101 4.101 18 H 0.124 0.876 19 C 0.495 3.505 20 O -0.512 6.512 21 O -0.512 6.512 22 C 0.145 3.855 23 C -0.195 4.195 24 C -0.212 4.212 25 H 0.263 0.737 26 H 0.021 0.979 27 H 0.108 0.892 28 H 0.395 0.605 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.410 0.590 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 -0.320 14.271 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.127 4.127 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.038 3.962 10 C 0.056 3.944 11 N -0.353 5.353 12 C 0.423 3.577 13 O -0.480 6.480 14 N -0.386 5.386 15 C -0.024 4.024 16 C -0.149 4.149 17 C -0.121 4.121 18 H 0.142 0.858 19 C 0.337 3.663 20 O -0.400 6.400 21 O -0.323 6.323 22 C 0.021 3.979 23 C -0.234 4.234 24 C -0.250 4.250 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.126 0.874 28 H 0.229 0.771 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.269 0.731 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.672 -0.498 13.891 13.916 hybrid contribution 0.814 1.456 0.372 1.709 sum 1.487 0.958 14.262 14.372 Atomic orbital electron populations 1.69851 1.05875 1.26915 1.47301 1.24951 0.94688 0.98907 0.94134 0.86673 0.79943 0.83577 0.78396 1.20594 1.21120 1.19671 1.20437 0.93807 0.88871 1.50651 0.92115 1.19190 0.94202 0.89011 0.93799 1.20882 0.98052 0.94872 0.80559 1.44909 1.10005 1.66055 1.14317 1.15448 0.84984 0.78399 0.78859 1.90853 1.17341 1.59251 1.80585 1.47453 1.07667 1.63687 1.19760 1.21985 0.84407 0.99785 0.96198 1.22611 0.95616 1.02038 0.94685 1.22258 0.97577 0.99046 0.93251 0.85810 1.23048 0.78333 0.84767 0.80192 1.90730 1.58431 1.29415 1.61409 1.84571 1.36544 1.55665 1.55569 1.21704 0.92568 1.00985 0.82674 1.22912 0.99315 1.06693 0.94451 1.22965 0.96766 1.01941 1.03294 0.92658 0.96043 0.87404 0.77117 0.91190 0.90738 0.89188 0.89164 0.73085 0.91707 0.89157 0.91489 0.90209 0.90665 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.31 10.78 55.43 0.60 -22.71 16 2 C 0.08 2.00 5.14 -17.82 -0.09 1.91 16 3 Si 0.89 19.97 29.55 -169.99 -5.02 14.95 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.50 -12.60 8.37 -34.44 -0.29 -12.89 16 8 H 0.06 1.53 7.84 -52.49 -0.41 1.12 16 9 C 0.04 0.91 1.96 -155.66 -0.31 0.60 16 10 C 0.18 4.27 4.76 -4.04 -0.02 4.25 16 11 N -0.70 -15.11 5.19 -65.22 -0.34 -15.45 16 12 C 0.72 15.40 8.48 -86.91 -0.74 14.67 16 13 O -0.60 -14.95 16.58 5.29 0.09 -14.86 16 14 N -0.64 -10.72 3.33 -176.25 -0.59 -11.30 16 15 C 0.10 1.30 6.16 -3.07 -0.02 1.28 16 16 C -0.11 -1.17 6.03 -24.90 -0.15 -1.33 16 17 C -0.10 -1.06 3.54 -89.62 -0.32 -1.37 16 18 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 19 C 0.49 5.24 7.64 36.01 0.27 5.51 16 20 O -0.51 -6.76 16.55 -18.74 -0.31 -7.07 16 21 O -0.51 -4.25 13.41 -39.27 -0.53 -4.78 16 22 C 0.15 2.00 6.38 -2.53 -0.02 1.99 16 23 C -0.20 -4.27 9.96 -26.69 -0.27 -4.53 16 24 C -0.21 -4.36 9.92 -26.69 -0.26 -4.63 16 25 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 26 H 0.02 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.11 2.95 6.07 -51.92 -0.32 2.63 16 28 H 0.39 7.98 7.07 -40.82 -0.29 7.69 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.04 7.50 -51.93 -0.39 0.65 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.41 1.62 9.10 45.56 0.41 2.04 16 34 H 0.06 0.92 8.03 -51.93 -0.42 0.50 16 35 H 0.09 1.28 7.99 -51.93 -0.41 0.87 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -31.93 330.17 -8.08 -40.01 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.76 Total: 10.78 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -2.20 Total: 5.46 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.33 Total: -49.47 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.75 Total: -26.71 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.93 -8.08 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608177982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.124 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds