Wall clock time and date at job start Tue Mar 31 2020 05:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48510 * 109.46668 * 270.00286 * 3 2 1 5 5 H 1.48498 * 109.47284 * 29.99586 * 3 2 1 6 6 H 1.48499 * 109.47447 * 150.00135 * 3 2 1 7 7 C 1.37875 * 120.00507 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00277 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99813 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99671 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00249 * 5.05578 * 11 10 9 13 13 N 1.34774 * 119.99468 * 185.05862 * 11 10 9 14 14 C 1.46845 * 120.38062 * 174.89751 * 13 11 10 15 15 C 1.53354 * 108.81075 * 236.92450 * 14 13 11 16 16 C 1.53182 * 108.76683 * 308.68177 * 15 14 13 17 17 C 1.52845 * 117.66226 * 269.97336 * 16 15 14 18 18 C 1.52823 * 117.71395 * 201.11397 * 16 15 14 19 19 H 1.08998 * 117.52394 * 215.09136 * 18 16 15 20 20 C 1.50699 * 117.49951 * 0.14386 * 18 16 15 21 21 O 1.20821 * 120.00393 * 359.97438 * 20 18 16 22 22 O 1.34226 * 119.99690 * 179.97438 * 20 18 16 23 23 C 1.53184 * 115.07724 * 55.45078 * 16 15 14 24 24 C 1.46845 * 120.38646 * 354.91661 * 13 11 10 25 25 H 0.96996 * 120.00288 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47167 * 60.00237 * 9 7 2 27 27 H 1.08997 * 109.47534 * 300.00687 * 9 7 2 28 28 H 0.96995 * 119.99972 * 0.02562 * 10 9 7 29 29 H 1.08999 * 109.58375 * 117.12698 * 14 13 11 30 30 H 1.08994 * 109.69344 * 356.78698 * 14 13 11 31 31 H 1.08999 * 109.58705 * 188.90146 * 15 14 13 32 32 H 1.08992 * 109.70555 * 68.53786 * 15 14 13 33 33 H 1.08997 * 117.50327 * 144.81124 * 17 16 15 34 34 H 1.09005 * 117.52502 * 359.75282 * 17 16 15 35 35 H 0.96701 * 117.00049 * 179.97438 * 22 20 18 36 36 H 1.08992 * 109.58790 * 64.33945 * 23 16 15 37 37 H 1.08998 * 109.58936 * 184.77677 * 23 16 15 38 38 H 1.09004 * 109.57666 * 242.88225 * 24 13 11 39 39 H 1.08996 * 109.57838 * 3.14402 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0025 12 8 0.5624 -5.1068 -0.0950 13 7 2.6256 -5.9062 0.0993 14 6 2.1399 -7.2874 0.2118 15 6 2.7057 -7.9076 1.4952 16 6 4.2227 -7.6959 1.5175 17 6 5.0992 -8.7753 0.8830 18 6 5.0562 -8.6197 2.4048 19 1 5.9331 -8.1937 2.8922 20 6 4.3237 -9.6757 3.1919 21 8 3.1220 -9.7673 3.1074 22 8 5.0065 -10.5145 3.9868 23 6 4.6770 -6.2394 1.3803 24 6 4.0719 -5.6524 0.0994 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 3.1569 -3.4353 -0.0021 29 1 2.4745 -7.8638 -0.6507 30 1 1.0508 -7.2915 0.2536 31 1 2.4854 -8.9749 1.5132 32 1 2.2568 -7.4271 2.3644 33 1 6.0042 -8.4511 0.3692 34 1 4.5981 -9.6417 0.4512 35 1 4.4933 -11.1749 4.4721 36 1 4.3341 -5.6670 2.2421 37 1 5.7647 -6.1999 1.3220 38 1 4.5262 -6.1274 -0.7703 39 1 4.2543 -4.5783 0.0658 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:40 Heat of formation + Delta-G solvation = -88.007349 kcal Electronic energy + Delta-G solvation = -22293.392363 eV Core-core repulsion = 18816.075774 eV Total energy + Delta-G solvation = -3477.316589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09273 -39.73283 -38.24355 -36.32787 -35.09943 -34.22370 -32.39434 -31.02988 -29.91870 -27.01050 -25.48362 -23.88049 -23.55122 -22.22463 -21.05556 -19.87070 -18.77323 -18.42484 -17.75315 -16.82224 -16.03076 -15.90770 -15.64352 -15.09216 -14.74452 -14.52880 -14.32768 -13.95906 -13.64885 -13.28534 -13.16378 -12.85906 -12.56908 -12.21233 -11.95993 -11.90218 -11.84282 -11.62461 -11.27406 -10.94771 -10.88068 -10.84074 -10.39868 -10.26985 -10.22966 -10.17870 -9.34612 -9.27466 -8.70193 -8.31872 -7.67214 -6.12703 -4.19274 1.79746 2.63963 3.24618 3.26128 3.32721 3.35386 3.35911 3.96375 4.23631 4.32748 4.37051 4.48302 4.61147 4.86310 4.94434 5.08823 5.17677 5.23247 5.31643 5.35690 5.47633 5.56427 5.62848 5.70943 5.76965 5.91477 6.04922 6.12879 6.25796 6.41675 6.87503 7.19703 7.55283 7.58726 7.61607 7.62942 7.90464 8.05680 8.79225 8.94944 9.36659 9.51494 10.97592 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031005 B = 0.003367 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.853151 B = 8315.202302 C = 8644.280640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.731 5.731 11 C 0.696 3.304 12 O -0.598 6.598 13 N -0.637 5.637 14 C 0.133 3.867 15 C -0.103 4.103 16 C -0.076 4.076 17 C -0.139 4.139 18 C -0.169 4.169 19 H 0.135 0.865 20 C 0.508 3.492 21 O -0.504 6.504 22 O -0.516 6.516 23 C -0.101 4.101 24 C 0.118 3.882 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.385 0.615 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.410 0.590 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.729 -19.179 4.174 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.385 5.385 11 C 0.397 3.603 12 O -0.477 6.477 13 N -0.377 5.377 14 C 0.009 3.991 15 C -0.141 4.141 16 C -0.076 4.076 17 C -0.176 4.176 18 C -0.188 4.188 19 H 0.152 0.848 20 C 0.351 3.649 21 O -0.392 6.392 22 O -0.328 6.328 23 C -0.139 4.139 24 C -0.006 4.006 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.220 0.780 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.269 0.731 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.533 -18.881 3.874 23.551 hybrid contribution 0.746 0.529 0.531 1.058 sum 14.278 -18.352 4.406 23.666 Atomic orbital electron populations 1.69979 1.06086 1.27229 1.48970 1.24943 0.94903 0.99369 0.94811 0.86423 0.79594 0.82729 0.78178 1.20493 1.21037 1.19785 1.21215 0.93186 0.90472 1.53062 0.92047 1.18974 0.87839 0.81125 0.97579 1.45884 1.10736 1.04482 1.77386 1.16094 0.84861 0.81100 0.78205 1.90856 1.14473 1.83849 1.58541 1.47263 1.05012 1.06157 1.79243 1.21383 1.00982 0.80548 0.96178 1.21925 0.90545 1.02984 0.98646 1.21643 0.94699 0.92142 0.99111 1.23194 1.02695 1.01450 0.90269 1.21848 1.03794 0.99506 0.93642 0.84762 1.22444 0.85727 0.80026 0.76719 1.90710 1.15819 1.70232 1.62459 1.84514 1.45932 1.45548 1.56851 1.21638 1.00183 0.92489 0.99600 1.21477 0.81309 1.01014 0.96795 0.92479 0.95703 0.95868 0.78023 0.92390 0.88733 0.88305 0.90924 0.87023 0.87923 0.73096 0.90300 0.90407 0.91539 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.25 5.43 -5.19 -0.03 7.23 16 10 N -0.73 -16.09 5.46 -66.41 -0.36 -16.45 16 11 C 0.70 15.01 8.29 -86.92 -0.72 14.29 16 12 O -0.60 -15.49 15.75 5.29 0.08 -15.41 16 13 N -0.64 -10.19 2.92 -178.43 -0.52 -10.71 16 14 C 0.13 1.88 6.43 -3.67 -0.02 1.86 16 15 C -0.10 -1.28 4.46 -26.45 -0.12 -1.40 16 16 C -0.08 -0.73 1.94 -154.49 -0.30 -1.03 16 17 C -0.14 -1.01 9.64 -26.79 -0.26 -1.27 16 18 C -0.17 -1.40 6.03 -91.85 -0.55 -1.95 16 19 H 0.13 0.90 8.14 -51.93 -0.42 0.47 16 20 C 0.51 4.85 8.09 36.01 0.29 5.15 16 21 O -0.50 -6.25 13.81 -18.75 -0.26 -6.51 16 22 O -0.52 -3.70 13.42 -39.25 -0.53 -4.23 16 23 C -0.10 -0.97 5.83 -26.46 -0.15 -1.12 16 24 C 0.12 1.38 6.44 -3.67 -0.02 1.36 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.38 7.24 5.75 -40.82 -0.23 7.00 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.57 6.99 -51.93 -0.36 1.21 16 31 H 0.10 1.23 5.70 -51.93 -0.30 0.93 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.41 1.27 9.10 45.56 0.41 1.68 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.01 5.51 -51.93 -0.29 0.72 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -35.48 323.15 -7.83 -43.31 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.52 Total: 5.24 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -2.30 Total: 9.62 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.15 Total: -52.81 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.70 Total: -26.14 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.48 -7.83 -43.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.695 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds