Wall clock time and date at job start Tue Mar 31 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00203 * 2 1 4 4 H 1.48505 * 109.47544 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46801 * 299.99580 * 3 2 1 6 6 H 1.48492 * 109.47330 * 59.99448 * 3 2 1 7 7 C 1.37878 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99930 * 176.35832 * 7 2 1 9 9 C 1.50699 * 120.00177 * 356.63835 * 7 2 1 10 10 C 1.53002 * 115.54723 * 276.81844 * 9 7 2 11 11 N 1.46499 * 109.47201 * 295.03958 * 10 9 7 12 12 C 1.34772 * 120.00496 * 182.82842 * 11 10 9 13 13 O 1.21585 * 119.99651 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00189 * 179.97438 * 12 11 10 15 15 C 1.46510 * 119.99702 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46696 * 182.79515 * 15 14 12 17 17 C 1.50706 * 115.54588 * 294.75493 * 16 15 14 18 18 O 1.20824 * 120.00021 * 124.09277 * 17 16 15 19 19 O 1.34232 * 119.99779 * 304.08336 * 17 16 15 20 20 C 1.52994 * 117.49851 * 149.09085 * 16 15 14 21 21 C 1.52998 * 117.50026 * 80.42496 * 16 15 14 22 22 C 1.53000 * 117.50363 * 131.10878 * 9 7 2 23 23 C 1.53001 * 117.49894 * 62.48200 * 9 7 2 24 24 H 0.96995 * 119.99938 * 5.02272 * 1 2 3 25 25 H 1.08996 * 109.47600 * 55.04037 * 10 9 7 26 26 H 1.09005 * 109.47026 * 175.04347 * 10 9 7 27 27 H 0.97005 * 119.99818 * 2.83008 * 11 10 9 28 28 H 0.96995 * 120.00043 * 0.02562 * 14 12 11 29 29 H 1.09003 * 109.46879 * 302.78950 * 15 14 12 30 30 H 1.09002 * 109.47014 * 62.79339 * 15 14 12 31 31 H 0.96698 * 116.99703 * 180.02562 * 19 17 16 32 32 H 1.09002 * 117.50075 * 359.97438 * 20 16 15 33 33 H 1.09001 * 117.50307 * 145.01490 * 20 16 15 34 34 H 1.08993 * 117.49630 * 214.97464 * 21 16 15 35 35 H 1.08997 * 117.50121 * 359.97438 * 21 16 15 36 36 H 1.08998 * 117.49489 * 359.97438 * 22 9 7 37 37 H 1.08999 * 117.49954 * 145.02338 * 22 9 7 38 38 H 1.09007 * 117.49646 * 214.98157 * 23 9 7 39 39 H 1.08996 * 117.49798 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0829 -1.1950 -0.0589 9 6 1.2530 -2.4980 0.0776 10 6 0.8517 -2.9461 1.4845 11 7 2.0562 -3.2277 2.2694 12 6 1.9460 -3.6949 3.5288 13 8 0.8469 -3.8832 4.0133 14 7 3.0541 -3.9545 4.2506 15 6 2.9342 -4.4618 5.6198 16 6 4.3280 -4.6048 6.2346 17 6 5.2207 -5.6332 5.5890 18 8 6.3064 -5.3115 5.1677 19 8 4.8096 -6.9065 5.4824 20 6 4.4572 -4.4062 7.7461 21 6 4.9903 -3.3403 6.7853 22 6 1.6208 -3.5863 -0.9329 23 6 0.2970 -2.8313 -1.0695 24 1 -0.4850 0.8368 -0.0735 25 1 0.2794 -2.1548 1.9685 26 1 0.2421 -3.8473 1.4187 27 1 2.9331 -3.0779 1.8827 28 1 3.9310 -3.8047 3.8640 29 1 2.3443 -3.7649 6.2152 30 1 2.4420 -5.4343 5.6052 31 1 5.4170 -7.5301 5.0612 32 1 3.5493 -4.1733 8.3026 33 1 5.1881 -5.0190 8.2736 34 1 6.0717 -3.2525 6.6812 35 1 4.4333 -2.4065 6.7094 36 1 2.4061 -3.3590 -1.6538 37 1 1.5771 -4.6219 -0.5956 38 1 -0.6176 -3.3703 -0.8219 39 1 0.2113 -2.1073 -1.8797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610620753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:56 Heat of formation + Delta-G solvation = -73.715372 kcal Electronic energy + Delta-G solvation = -22061.405319 eV Core-core repulsion = 18584.708476 eV Total energy + Delta-G solvation = -3476.696843 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.87972 -39.36894 -37.70092 -36.70365 -36.26504 -33.80284 -33.19418 -31.95468 -27.90490 -26.00034 -25.15610 -24.27097 -22.91330 -21.17628 -20.35564 -20.19491 -19.37137 -18.28742 -17.79981 -17.10682 -16.27207 -15.87288 -15.46343 -15.13966 -14.71628 -14.59377 -14.26385 -14.01963 -13.65699 -13.33288 -13.00246 -12.62975 -12.46541 -11.93678 -11.85105 -11.77053 -11.55295 -11.15066 -11.00501 -10.92641 -10.80190 -10.65587 -10.51248 -10.23539 -9.74844 -9.45876 -9.01450 -8.90100 -8.48687 -8.23672 -7.98132 -6.06473 -4.15835 1.82059 2.60853 2.95448 3.25401 3.34574 3.36539 3.46355 3.76972 4.15465 4.35625 4.37439 4.43328 4.80456 4.89187 5.20452 5.22236 5.28472 5.39351 5.52565 5.60644 5.69083 5.75655 6.04416 6.18966 6.35677 6.49293 6.60082 6.66976 6.71622 6.85905 7.12151 7.31344 7.43192 7.43761 7.58956 7.62325 7.82744 8.35383 8.63111 8.85650 9.17368 9.51300 11.01137 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.004065 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.336169 B = 6886.917222 C = 7391.443768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.498 4.498 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.182 3.818 11 N -0.719 5.719 12 C 0.700 3.300 13 O -0.603 6.603 14 N -0.756 5.756 15 C 0.186 3.814 16 C -0.158 4.158 17 C 0.518 3.482 18 O -0.510 6.510 19 O -0.506 6.506 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.210 4.210 23 C -0.144 4.144 24 H 0.261 0.739 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.397 0.603 28 H 0.394 0.606 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.412 0.588 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.438 -9.873 12.531 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.535 4.535 8 H 0.078 0.922 9 C 0.024 3.976 10 C 0.059 3.941 11 N -0.372 5.372 12 C 0.400 3.600 13 O -0.482 6.482 14 N -0.413 5.413 15 C 0.061 3.939 16 C -0.159 4.159 17 C 0.360 3.640 18 O -0.398 6.398 19 O -0.318 6.318 20 C -0.175 4.175 21 C -0.174 4.174 22 C -0.248 4.248 23 C -0.182 4.182 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.230 0.770 28 H 0.228 0.772 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.270 0.730 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.237 -9.544 13.083 18.169 hybrid contribution 1.633 0.628 -0.809 1.928 sum 9.870 -8.917 12.274 18.099 Atomic orbital electron populations 1.69994 1.05852 1.26746 1.48468 1.24981 0.94812 0.98927 0.94363 0.86579 0.80145 0.83896 0.77611 1.19758 1.21038 1.20986 1.20385 0.92464 0.88538 1.52151 0.92217 1.19063 0.99212 0.93259 0.86079 1.20854 0.84142 0.97811 0.91332 1.45161 1.11372 1.68319 1.12300 1.15976 0.83888 0.78633 0.81533 1.90875 1.25197 1.60604 1.71563 1.45083 1.08189 1.73088 1.14974 1.20487 0.90634 1.00614 0.82151 1.21196 0.97545 0.98166 0.99042 1.22112 0.84728 0.81741 0.75398 1.90741 1.22740 1.80843 1.45431 1.84533 1.52083 1.20181 1.74985 1.23149 1.04249 1.01762 0.88354 1.23233 1.02047 0.92449 0.99661 1.22994 1.00077 0.95670 1.06039 1.22469 0.91183 1.01452 1.03111 0.92939 0.91442 0.94506 0.76989 0.77238 0.90156 0.90424 0.72952 0.86629 0.87733 0.87172 0.86615 0.90442 0.91701 0.91747 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.31 12.76 55.43 0.71 -23.60 16 2 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.50 -12.84 8.60 -34.44 -0.30 -13.14 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.02 0.58 1.42 -155.66 -0.22 0.36 16 10 C 0.18 4.20 5.50 -4.04 -0.02 4.18 16 11 N -0.72 -14.28 5.48 -65.23 -0.36 -14.64 16 12 C 0.70 13.47 8.57 -86.92 -0.74 12.73 16 13 O -0.60 -13.78 16.34 5.29 0.09 -13.70 16 14 N -0.76 -10.98 5.48 -65.22 -0.36 -11.34 16 15 C 0.19 2.25 5.50 -4.03 -0.02 2.23 16 16 C -0.16 -1.52 2.06 -155.66 -0.32 -1.84 16 17 C 0.52 5.55 7.43 36.01 0.27 5.82 16 18 O -0.51 -6.73 17.24 -18.75 -0.32 -7.05 16 19 O -0.51 -4.44 13.42 -39.26 -0.53 -4.97 16 20 C -0.14 -0.95 9.93 -26.69 -0.26 -1.22 16 21 C -0.14 -1.14 9.76 -26.69 -0.26 -1.40 16 22 C -0.21 -4.42 9.96 -26.73 -0.27 -4.69 16 23 C -0.14 -3.31 9.28 -26.73 -0.25 -3.56 16 24 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 25 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 26 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 27 H 0.40 7.26 8.36 -40.82 -0.34 6.92 16 28 H 0.39 5.16 8.37 -40.82 -0.34 4.82 16 29 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.41 1.87 9.10 45.56 0.41 2.28 16 32 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.94 7.84 -51.93 -0.41 0.54 16 35 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -32.68 344.31 -7.97 -40.65 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -4.87 Total: 12.53 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.50 Total: 1.31 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.01 Total: -49.58 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.76 Total: -25.72 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.68 -7.97 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.066 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds