Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40365 * 126.44329 * 2 1 4 4 C 1.36540 * 106.70864 * 180.02562 * 3 2 1 5 5 C 1.46658 * 125.98849 * 179.97438 * 4 3 2 6 6 O 1.21695 * 119.99949 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00033 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99861 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46985 * 180.02562 * 8 7 5 10 10 H 1.09005 * 109.47159 * 64.99675 * 9 8 7 11 11 C 1.52999 * 109.47264 * 184.99674 * 9 8 7 12 12 O 1.42903 * 109.46807 * 54.99742 * 11 9 8 13 13 N 1.46498 * 109.47167 * 304.99505 * 9 8 7 14 14 C 1.36935 * 120.00239 * 154.99975 * 13 9 8 15 15 H 1.08004 * 120.00069 * 0.02562 * 14 13 9 16 16 C 1.38811 * 120.00368 * 180.02562 * 14 13 9 17 17 N 1.31624 * 119.99540 * 359.72375 * 16 14 13 18 18 Si 1.86800 * 120.00451 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72253 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72375 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72186 * 18 16 14 22 22 O 1.34909 * 108.02629 * 0.24171 * 4 3 2 23 23 C 1.33941 * 109.38340 * 359.59891 * 22 4 3 24 24 C 1.50695 * 125.61676 * 180.12098 * 23 22 4 25 25 H 1.08997 * 109.46742 * 89.97416 * 1 2 3 26 26 H 1.09000 * 109.46932 * 209.97409 * 1 2 3 27 27 H 1.09002 * 109.47438 * 329.97471 * 1 2 3 28 28 H 1.08006 * 126.64497 * 0.02562 * 3 2 1 29 29 H 0.96994 * 120.00036 * 359.97438 * 7 5 4 30 30 H 1.08996 * 109.47079 * 59.99484 * 8 7 5 31 31 H 1.09001 * 109.46574 * 299.99257 * 8 7 5 32 32 H 1.08997 * 109.47298 * 174.99526 * 11 9 8 33 33 H 1.08997 * 109.46949 * 294.99894 * 11 9 8 34 34 H 0.96702 * 113.99897 * 179.97438 * 12 11 9 35 35 H 0.97004 * 119.99747 * 335.00715 * 13 9 8 36 36 H 0.97000 * 120.00481 * 0.27542 * 17 16 14 37 37 H 1.08996 * 109.47450 * 270.33179 * 24 23 22 38 38 H 1.09004 * 109.46880 * 30.32775 * 24 23 22 39 39 H 1.09004 * 109.47395 * 150.32532 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8379 1.4941 -0.0013 6 8 4.7472 2.7076 -0.0019 7 7 6.0521 0.9091 -0.0013 8 6 7.2627 1.7343 -0.0027 9 6 8.4965 0.8296 -0.0030 10 1 8.5320 0.2639 -0.9341 11 6 9.7576 1.6869 0.1213 12 8 9.6583 2.5147 1.2819 13 7 8.4227 -0.0974 1.1290 14 6 9.0837 -1.2955 1.0772 15 1 9.6598 -1.5570 0.2018 16 6 9.0133 -2.1741 2.1496 17 7 8.3157 -1.8530 3.2186 18 14 9.9155 -3.8082 2.0791 19 1 9.6877 -4.5544 3.3427 20 1 9.4064 -4.6058 0.9346 21 1 11.3697 -3.5636 1.9040 22 8 3.5858 -0.6804 -0.0063 23 6 2.3097 -1.0871 -0.0006 24 6 1.8455 -2.5207 -0.0016 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3634 0.8898 0.5142 28 1 2.0267 2.1625 0.0004 29 1 6.1244 -0.0581 -0.0005 30 1 7.2739 2.3644 0.8867 31 1 7.2731 2.3625 -0.8933 32 1 10.6299 1.0393 0.2104 33 1 9.8595 2.3138 -0.7646 34 1 10.4252 3.0864 1.4240 35 1 7.9055 0.1376 1.9153 36 1 7.8475 -1.0043 3.2554 37 1 1.7338 -2.8658 -1.0295 38 1 2.5802 -3.1409 0.5119 39 1 0.8868 -2.5927 0.5121 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755625637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = -68.069793 kcal Electronic energy + Delta-G solvation = -22185.838830 eV Core-core repulsion = 18709.386798 eV Total energy + Delta-G solvation = -3476.452032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.66613 -39.22389 -37.21604 -35.07976 -34.50612 -33.67719 -32.04837 -31.35694 -28.83200 -28.18421 -26.71614 -24.89808 -23.45987 -22.02693 -21.02857 -20.28562 -19.35800 -17.86796 -17.51084 -16.70874 -16.46694 -15.88492 -15.56303 -14.88512 -14.69444 -13.98388 -13.85783 -13.70744 -13.51239 -13.44714 -13.30904 -13.16850 -12.93784 -12.88772 -12.71304 -12.27645 -11.88158 -11.62424 -11.50411 -10.88526 -10.76664 -10.47386 -10.06056 -10.01244 -9.67774 -9.51530 -9.19367 -8.99099 -8.81021 -8.30241 -7.10945 -6.13763 -3.15306 1.16676 2.29483 2.72486 3.38311 3.47863 3.49147 3.51959 3.69062 4.60526 4.62585 4.74858 4.84593 4.87814 5.11310 5.29095 5.30283 5.36662 5.42353 5.47987 5.54008 5.57660 5.66214 5.76536 5.81053 5.90671 5.93759 5.94538 6.03365 6.23937 6.38830 6.45808 6.62835 6.71179 6.98299 7.72981 7.80411 8.12726 8.35451 8.71981 9.16262 10.03208 10.18350 11.33882 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.005114 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.363237 B = 5473.500095 C = 7150.169284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.198 4.198 3 C -0.122 4.122 4 C -0.070 4.070 5 C 0.598 3.402 6 O -0.534 6.534 7 N -0.701 5.701 8 C 0.116 3.884 9 C 0.171 3.829 10 H 0.068 0.932 11 C 0.060 3.940 12 O -0.562 6.562 13 N -0.724 5.724 14 C -0.340 4.340 15 H 0.064 0.936 16 C -0.039 4.039 17 N -0.938 5.938 18 Si 1.079 2.921 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.296 1.296 22 O -0.154 6.154 23 C 0.017 3.983 24 C -0.079 4.079 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.157 0.843 29 H 0.414 0.586 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.365 0.635 35 H 0.372 0.628 36 H 0.257 0.743 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 2.724 -8.882 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.200 4.200 3 C -0.142 4.142 4 C -0.122 4.122 5 C 0.383 3.617 6 O -0.414 6.414 7 N -0.352 5.352 8 C -0.008 4.008 9 C 0.060 3.940 10 H 0.085 0.915 11 C -0.021 4.021 12 O -0.366 6.366 13 N -0.367 5.367 14 C -0.471 4.471 15 H 0.082 0.918 16 C -0.238 4.238 17 N -0.582 5.582 18 Si 0.910 3.090 19 H -0.210 1.210 20 H -0.223 1.223 21 H -0.223 1.223 22 O -0.050 6.050 23 C -0.036 4.036 24 C -0.135 4.135 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.175 0.825 29 H 0.251 0.749 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.210 0.790 35 H 0.206 0.794 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.919 1.576 -8.164 13.725 hybrid contribution 0.277 1.484 -0.712 1.669 sum -10.642 3.060 -8.876 14.192 Atomic orbital electron populations 1.20158 0.88780 1.02619 1.01991 1.20157 0.97344 0.91802 1.10672 1.21740 0.90516 1.00259 1.01735 1.22083 0.96277 0.80322 1.13486 1.16566 0.81445 0.86276 0.77377 1.90839 1.86204 1.12257 1.52083 1.45945 1.04966 1.11872 1.72404 1.21664 0.83194 0.93564 1.02404 1.20531 0.90408 0.89790 0.93285 0.91462 1.23011 1.00807 0.92306 0.86003 1.86549 1.45314 1.57445 1.47252 1.42369 1.60605 1.17508 1.16253 1.20006 1.28097 0.95141 1.03844 0.91769 1.25750 1.01294 1.03828 0.92895 1.70857 1.33649 1.24643 1.29063 0.83257 0.75058 0.75111 0.75553 1.21047 1.22251 1.22337 1.84083 1.28668 1.21791 1.70448 1.22590 0.80754 0.97193 1.03048 1.20404 1.02013 0.87309 1.03750 0.91504 0.91579 0.91457 0.82489 0.74920 0.90288 0.91583 0.93169 0.95322 0.79004 0.79432 0.93152 0.89721 0.89832 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.17 36.01 0.37 -0.33 16 2 C -0.20 -2.54 6.14 -104.93 -0.64 -3.18 16 3 C -0.12 -1.82 10.57 -39.39 -0.42 -2.23 16 4 C -0.07 -1.19 7.13 -36.80 -0.26 -1.45 16 5 C 0.60 11.29 7.79 -12.86 -0.10 11.19 16 6 O -0.53 -11.09 16.86 5.19 0.09 -11.00 16 7 N -0.70 -13.08 5.38 -61.62 -0.33 -13.41 16 8 C 0.12 2.13 5.12 -4.04 -0.02 2.11 16 9 C 0.17 3.35 2.84 -67.93 -0.19 3.16 16 10 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 11 C 0.06 1.06 6.86 37.16 0.25 1.32 16 12 O -0.56 -10.12 12.64 -35.23 -0.45 -10.56 16 13 N -0.72 -17.62 4.51 -53.43 -0.24 -17.86 16 14 C -0.34 -9.19 9.93 -15.06 -0.15 -9.34 16 15 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 16 C -0.04 -1.11 5.50 -17.43 -0.10 -1.20 16 17 N -0.94 -28.78 13.70 55.49 0.76 -28.02 16 18 Si 1.08 25.37 29.92 -169.99 -5.09 20.28 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.30 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.30 -6.68 7.11 56.52 0.40 -6.27 16 22 O -0.15 -2.57 10.40 4.98 0.05 -2.52 16 23 C 0.02 0.23 7.31 -35.42 -0.26 -0.03 16 24 C -0.08 -0.73 10.21 36.00 0.37 -0.36 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.48 7.13 -51.93 -0.37 0.11 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.16 2.14 8.06 -52.48 -0.42 1.71 16 29 H 0.41 7.99 7.89 -40.82 -0.32 7.67 16 30 H 0.08 1.60 7.39 -51.93 -0.38 1.22 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.37 4.73 9.12 45.56 0.42 5.15 16 35 H 0.37 9.81 6.63 -40.82 -0.27 9.54 16 36 H 0.26 7.92 6.77 -40.82 -0.28 7.65 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.63 7.13 -51.93 -0.37 0.26 16 LS Contribution 337.31 15.07 5.08 5.08 Total: -1.00 -33.96 337.31 -5.86 -39.82 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -4.59 Total: 18.55 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.15 Total: -0.37 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.19 Total: -59.28 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.31 Total: -24.09 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.09 Total: 20.28 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.96 -5.86 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755625637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.248 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds