Wall clock time and date at job start Tue Mar 31 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40358 * 126.64512 * 2 1 4 4 C 1.35139 * 107.11695 * 179.83290 * 3 2 1 5 5 O 1.33931 * 108.76058 * 0.43107 * 4 3 2 6 6 C 1.34915 * 109.38744 * 359.72505 * 5 4 3 7 7 C 1.46656 * 125.98699 * 179.97438 * 6 5 4 8 8 O 1.21693 * 120.00174 * 172.58538 * 7 6 5 9 9 N 1.34781 * 120.00104 * 352.59144 * 7 6 5 10 10 C 1.46496 * 119.99984 * 3.52891 * 9 7 6 11 11 C 1.46503 * 119.99881 * 183.53222 * 9 7 6 12 12 C 1.52995 * 109.46998 * 89.99772 * 11 9 7 13 13 H 1.09002 * 109.47314 * 304.99672 * 12 11 9 14 14 O 1.42903 * 109.47413 * 65.00215 * 12 11 9 15 15 C 1.52999 * 109.46967 * 184.99757 * 12 11 9 16 16 N 1.46502 * 109.47127 * 180.02562 * 15 12 11 17 17 C 1.36941 * 119.99968 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00201 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99821 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99813 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00479 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46773 * 89.99454 * 21 19 17 23 23 H 1.48493 * 109.47315 * 209.99919 * 21 19 17 24 24 H 1.48501 * 109.46489 * 330.00078 * 21 19 17 25 25 H 1.09000 * 109.47245 * 269.68892 * 1 2 3 26 26 H 1.09003 * 109.46719 * 149.68937 * 1 2 3 27 27 H 1.08999 * 109.47305 * 29.69229 * 1 2 3 28 28 H 1.08005 * 126.44484 * 0.02562 * 3 2 1 29 29 H 1.07999 * 125.61827 * 180.15443 * 4 3 2 30 30 H 1.08994 * 109.47226 * 83.93445 * 10 9 7 31 31 H 1.08999 * 109.47474 * 203.93834 * 10 9 7 32 32 H 1.09006 * 109.47084 * 323.93693 * 10 9 7 33 33 H 1.08997 * 109.47076 * 209.99622 * 11 9 7 34 34 H 1.09003 * 109.47200 * 329.99755 * 11 9 7 35 35 H 0.96695 * 114.00234 * 59.99178 * 14 12 11 36 36 H 1.09004 * 109.47535 * 300.00145 * 15 12 11 37 37 H 1.09003 * 109.47305 * 60.00295 * 15 12 11 38 38 H 0.96998 * 120.00102 * 0.02562 * 16 15 12 39 39 H 0.96999 * 120.00373 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 0.0038 5 8 3.6005 -0.6647 -0.0035 6 6 2.3220 -1.0955 -0.0059 7 6 1.8842 -2.4952 -0.0140 8 8 0.7052 -2.7648 0.1205 9 7 2.7878 -3.4830 -0.1704 10 6 4.2150 -3.1636 -0.2546 11 6 2.3426 -4.8761 -0.2561 12 6 2.0753 -5.2369 -1.7187 13 1 1.3661 -4.5271 -2.1443 14 8 3.2999 -5.1855 -2.4535 15 6 1.4925 -6.6494 -1.7972 16 7 1.2371 -6.9952 -3.1977 17 6 0.7112 -8.2189 -3.5159 18 1 0.4843 -8.9289 -2.7344 19 6 0.4687 -8.5463 -4.8428 20 7 -0.0372 -9.7223 -5.1486 21 14 0.8605 -7.3180 -6.1947 22 1 2.2565 -7.5209 -6.6585 23 1 -0.0731 -7.5188 -7.3318 24 1 0.7096 -5.9377 -5.6681 25 1 -0.3634 -0.0056 1.0276 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3634 0.8927 -0.5090 28 1 2.0306 2.1595 0.0004 29 1 4.5046 1.2916 0.0071 30 1 4.6256 -3.0667 0.7504 31 1 4.7354 -3.9616 -0.7843 32 1 4.3461 -2.2247 -0.7927 33 1 3.1173 -5.5304 0.1437 34 1 1.4272 -5.0013 0.3221 35 1 3.9789 -5.7927 -2.1293 36 1 2.2017 -7.3594 -1.3716 37 1 0.5584 -6.6887 -1.2367 38 1 1.4405 -6.3574 -3.8996 39 1 -0.2063 -9.9513 -6.0759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755772767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:26 Heat of formation + Delta-G solvation = -47.424379 kcal Electronic energy + Delta-G solvation = -22323.942237 eV Core-core repulsion = 18848.385457 eV Total energy + Delta-G solvation = -3475.556780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.98667 -39.84856 -37.64521 -35.56816 -34.23019 -34.08478 -31.59254 -30.92365 -29.72227 -27.95576 -26.92390 -25.57587 -23.08923 -22.20294 -21.31946 -21.14347 -19.56783 -17.78853 -17.65024 -16.87871 -16.54824 -16.43530 -15.89790 -15.30290 -14.90097 -14.45061 -14.10289 -13.84219 -13.58950 -13.38247 -13.34741 -13.21745 -12.97214 -12.82864 -12.46037 -12.35401 -12.07055 -11.97510 -11.62931 -11.22143 -10.88307 -10.81295 -10.31802 -10.16237 -9.96596 -9.86700 -9.56072 -8.95362 -8.89017 -8.55772 -7.21184 -5.74530 -3.09957 0.85196 2.08106 2.42307 2.87651 3.04638 3.43399 3.49635 3.49845 4.27251 4.52501 4.55532 4.59238 4.63861 4.87212 5.00364 5.10305 5.22134 5.27815 5.32284 5.40671 5.51147 5.54413 5.55593 5.69684 5.70410 5.81108 5.86333 5.88549 5.94559 6.18074 6.31673 6.47217 6.61701 6.63512 7.14282 7.85432 7.91275 8.02227 8.44476 9.24400 9.96783 10.17098 11.43679 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.003711 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.685162 B = 7543.543000 C = 7726.409105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.089 4.089 3 C -0.224 4.224 4 C -0.014 4.014 5 O -0.158 6.158 6 C -0.080 4.080 7 C 0.598 3.402 8 O -0.516 6.516 9 N -0.599 5.599 10 C 0.079 3.921 11 C 0.087 3.913 12 C 0.082 3.918 13 H 0.100 0.900 14 O -0.555 6.555 15 C 0.131 3.869 16 N -0.750 5.750 17 C -0.246 4.246 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.154 0.846 29 H 0.208 0.792 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.370 0.630 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.366 0.634 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.483 22.344 13.951 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.243 4.243 4 C -0.084 4.084 5 O -0.053 6.053 6 C -0.131 4.131 7 C 0.386 3.614 8 O -0.393 6.393 9 N -0.330 5.330 10 C -0.064 4.064 11 C -0.036 4.036 12 C 0.021 3.979 13 H 0.118 0.882 14 O -0.359 6.359 15 C 0.003 3.997 16 N -0.396 5.396 17 C -0.376 4.376 18 H 0.107 0.893 19 C -0.191 4.191 20 N -0.582 5.582 21 Si 0.717 3.283 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.203 1.203 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.172 0.828 29 H 0.225 0.775 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.216 0.784 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.200 0.800 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.688 22.177 13.711 27.815 hybrid contribution 0.622 0.645 -0.735 1.158 sum 10.310 22.821 12.976 28.205 Atomic orbital electron populations 1.20410 0.88169 1.03559 1.02925 1.20656 0.97725 0.91003 0.99757 1.21739 0.92485 1.00100 1.09984 1.24418 0.99895 0.81322 1.02743 1.84299 1.28195 1.22117 1.70737 1.21854 0.81464 0.94741 1.15057 1.16673 0.85477 0.81941 0.77325 1.90874 1.15981 1.81960 1.50533 1.47605 1.07420 1.06640 1.71329 1.21999 0.79898 1.02845 1.01644 1.22290 1.02421 0.80464 0.98427 1.22626 0.86640 0.98507 0.90106 0.88204 1.86594 1.24469 1.65235 1.59623 1.21191 0.98130 0.92031 0.88396 1.42578 1.78077 1.17316 1.01596 1.19054 1.34073 0.91032 0.93406 0.89267 1.24660 1.00904 0.96626 0.96876 1.69708 1.50030 1.20677 1.17828 0.86503 0.77888 0.81435 0.82477 1.21020 1.21778 1.20279 0.90708 0.89596 0.91503 0.82803 0.77521 0.92695 0.90027 0.90111 0.89556 0.88278 0.78357 0.95278 0.94537 0.80036 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.75 36.01 0.35 -0.66 16 2 C -0.09 -1.02 6.20 -104.44 -0.65 -1.66 16 3 C -0.22 -1.93 10.83 -39.89 -0.43 -2.36 16 4 C -0.01 -0.11 12.08 29.63 0.36 0.25 16 5 O -0.16 -1.60 7.30 4.99 0.04 -1.56 16 6 C -0.08 -1.00 6.76 -36.80 -0.25 -1.25 16 7 C 0.60 8.61 7.64 -12.86 -0.10 8.51 16 8 O -0.52 -8.73 14.40 5.19 0.07 -8.66 16 9 N -0.60 -7.46 2.84 -183.14 -0.52 -7.98 16 10 C 0.08 0.75 9.39 59.84 0.56 1.31 16 11 C 0.09 1.09 5.06 -4.04 -0.02 1.07 16 12 C 0.08 1.30 3.30 -26.73 -0.09 1.21 16 13 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 14 O -0.55 -8.53 12.02 -35.23 -0.42 -8.96 16 15 C 0.13 2.52 5.92 -4.04 -0.02 2.50 16 16 N -0.75 -18.54 5.30 -59.91 -0.32 -18.86 16 17 C -0.25 -7.17 10.47 -15.06 -0.16 -7.33 16 18 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.99 13.97 55.49 0.78 -29.21 16 21 Si 0.89 23.14 27.74 -169.99 -4.71 18.43 16 22 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 24 H -0.28 -7.00 6.52 56.52 0.37 -6.63 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.11 6.63 -51.93 -0.34 0.77 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 29 H 0.21 0.63 8.06 -52.49 -0.42 0.20 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.68 7.24 -51.93 -0.38 0.31 16 32 H 0.08 0.79 5.42 -51.93 -0.28 0.51 16 33 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.10 1.33 7.37 -51.93 -0.38 0.95 16 35 H 0.37 4.34 9.04 45.56 0.41 4.75 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.37 9.16 5.40 -40.82 -0.22 8.94 16 39 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -36.12 327.70 -5.28 -41.40 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.59 Total: 8.83 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.54 Total: 1.64 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.06 Total: -56.05 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.31 Total: -19.18 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.71 Total: 18.43 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.12 -5.28 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755772767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.027 kcal (2) G-P(sol) polarization free energy of solvation -36.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds