Wall clock time and date at job start Tue Mar 31 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46837 * 2 1 4 4 C 1.34226 * 116.99798 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99959 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99900 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46912 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47060 * 179.97438 * 7 6 4 9 9 H 1.09004 * 110.54459 * 303.60692 * 8 7 6 10 10 C 1.51438 * 110.61002 * 180.58178 * 8 7 6 11 11 C 1.50699 * 126.41491 * 61.46689 * 10 8 7 12 12 N 1.27563 * 107.17021 * 241.48236 * 10 8 7 13 13 N 1.39156 * 113.16258 * 0.02562 * 12 10 8 14 14 C 1.46504 * 124.43739 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47157 * 270.02365 * 14 13 12 16 16 H 1.08005 * 119.99733 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00190 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99837 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00007 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47069 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46847 * 120.00235 * 19 17 15 22 22 H 1.48499 * 109.46817 * 239.99822 * 19 17 15 23 23 C 1.34954 * 111.12127 * 359.97438 * 13 12 10 24 24 O 1.21297 * 127.49884 * 179.97438 * 23 13 12 25 25 H 1.08993 * 109.46973 * 59.99936 * 1 2 3 26 26 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47218 * 300.00037 * 1 2 3 28 28 H 1.09000 * 109.47218 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46958 * 120.00063 * 2 1 3 30 30 H 1.09001 * 109.46980 * 59.99650 * 6 4 3 31 31 H 1.08992 * 109.47158 * 299.99756 * 6 4 3 32 32 H 1.09002 * 109.47398 * 300.00078 * 7 6 4 33 33 H 1.09001 * 109.47194 * 60.00258 * 7 6 4 34 34 H 1.08999 * 109.47280 * 89.99935 * 11 10 8 35 35 H 1.09004 * 109.46970 * 210.00049 * 11 10 8 36 36 H 1.09000 * 109.47274 * 329.99767 * 11 10 8 37 37 H 1.09001 * 109.47030 * 30.02355 * 14 13 12 38 38 H 1.08993 * 109.47148 * 150.02470 * 14 13 12 39 39 H 0.96996 * 119.99752 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8574 -0.0001 8 6 6.0334 4.2712 -0.0002 9 1 5.6574 4.8406 -0.8503 10 6 7.5469 4.2221 -0.0147 11 6 8.4120 3.6182 -1.0908 12 7 7.9523 4.7873 1.0546 13 7 6.9136 5.2480 1.8579 14 6 7.0987 5.9329 3.1396 15 6 7.1288 4.9170 4.2523 16 1 7.0212 3.8662 4.0272 17 6 7.2947 5.3290 5.5576 18 7 7.4261 6.6085 5.8317 19 14 7.3312 4.0697 6.9370 20 1 7.1629 2.7081 6.3687 21 1 8.6326 4.1517 7.6476 22 1 6.2279 4.3485 7.8910 23 6 5.7134 4.9810 1.3015 24 8 4.6172 5.2496 1.7460 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.5851 3.4691 0.8905 31 1 3.5843 3.4701 -0.8894 32 1 5.7846 2.3249 0.8896 33 1 5.7845 2.3257 -0.8904 34 1 8.6453 4.3768 -1.8379 35 1 9.3367 3.2477 -0.6482 36 1 7.8799 2.7933 -1.5645 37 1 8.0393 6.4836 3.1248 38 1 6.2741 6.6266 3.3033 39 1 7.5424 6.8983 6.7500 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042396762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:10 Heat of formation + Delta-G solvation = -83.895818 kcal Electronic energy + Delta-G solvation = -22076.028715 eV Core-core repulsion = 18598.890415 eV Total energy + Delta-G solvation = -3477.138300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94685 -40.36704 -36.87340 -36.83477 -34.69091 -33.23253 -32.11144 -31.77192 -29.11184 -28.57548 -26.40822 -24.40168 -23.10790 -22.34768 -20.80794 -20.24267 -18.94945 -17.74143 -16.97661 -16.73019 -16.36397 -15.87046 -15.62930 -14.85339 -14.69581 -14.38611 -14.03144 -13.49938 -13.40762 -13.15936 -13.03606 -12.83326 -12.50726 -12.36920 -12.20223 -12.06814 -11.89518 -11.71055 -11.49189 -11.39228 -11.27508 -10.82796 -10.77588 -10.68164 -10.56761 -10.33023 -10.01118 -9.61748 -9.00438 -8.52623 -7.82163 -6.14563 -4.20029 2.01067 2.19170 2.60210 3.17894 3.26902 3.33873 3.35364 3.41577 4.19928 4.30024 4.38589 4.54612 4.70755 4.77453 4.91361 5.00538 5.05263 5.12399 5.20741 5.28846 5.44818 5.50534 5.54282 5.56804 5.64223 5.68419 5.74385 5.96013 6.01873 6.14745 6.37831 6.46927 7.07375 7.20420 7.29418 7.71193 7.80534 8.04484 8.40451 8.57334 8.85039 9.45072 10.93806 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.004685 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.477700 B = 5974.836333 C = 7237.299214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.467 3.533 5 O -0.512 6.512 6 C -0.123 4.123 7 C -0.074 4.074 8 C -0.142 4.142 9 H 0.127 0.873 10 C 0.054 3.946 11 C -0.070 4.070 12 N -0.213 5.213 13 N -0.440 5.440 14 C 0.266 3.734 15 C -0.532 4.532 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.494 3.506 24 O -0.503 6.503 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 -9.483 -16.746 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.310 3.690 5 O -0.400 6.400 6 C -0.160 4.160 7 C -0.113 4.113 8 C -0.166 4.166 9 H 0.145 0.855 10 C -0.139 4.139 11 C -0.128 4.128 12 N -0.020 5.020 13 N -0.259 5.259 14 C 0.149 3.851 15 C -0.570 4.570 16 H 0.078 0.922 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.207 1.207 23 C 0.279 3.721 24 O -0.377 6.377 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.737 -9.118 -15.575 19.264 hybrid contribution -0.643 -0.882 0.609 1.250 sum -7.380 -10.000 -14.966 19.453 Atomic orbital electron populations 1.21806 0.92675 1.02855 1.03635 1.23015 0.95369 0.80426 1.02547 1.86528 1.24799 1.32204 1.84060 1.23824 0.80399 0.92910 0.71843 1.90658 1.60362 1.43340 1.45592 1.21566 0.96144 0.90836 1.07501 1.21018 0.92211 0.93277 1.04804 1.21804 0.95716 0.99066 0.99982 0.85548 1.25045 0.92787 1.00198 0.95874 1.20217 0.98224 1.00240 0.94152 1.74553 1.18055 1.07557 1.01810 1.50397 1.01435 1.53193 1.20881 1.19481 0.99036 0.92109 0.74501 1.21392 1.50913 0.93611 0.91134 0.92196 1.24915 0.94708 0.95625 0.98638 1.69932 1.49093 1.14031 1.20097 0.86355 0.77739 0.81332 0.81544 1.19721 1.20680 1.20702 1.21097 0.85300 0.79618 0.86044 1.90686 1.23705 1.54454 1.68878 0.91496 0.90339 0.91333 0.91322 0.91222 0.85704 0.87383 0.90263 0.89458 0.90116 0.90074 0.90169 0.93419 0.93013 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.58 10.22 -39.25 -0.40 -4.98 16 4 C 0.47 6.48 7.96 36.01 0.29 6.76 16 5 O -0.51 -8.19 15.73 -18.75 -0.29 -8.48 16 6 C -0.12 -1.59 5.61 -27.88 -0.16 -1.74 16 7 C -0.07 -1.00 4.03 -26.73 -0.11 -1.11 16 8 C -0.14 -2.09 3.07 -92.08 -0.28 -2.37 16 9 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 10 C 0.05 0.81 6.93 -78.73 -0.55 0.26 16 11 C -0.07 -0.67 10.49 36.01 0.38 -0.29 16 12 N -0.21 -4.24 12.02 35.52 0.43 -3.82 16 13 N -0.44 -10.17 3.53 -61.06 -0.22 -10.39 16 14 C 0.27 7.18 5.99 -5.19 -0.03 7.15 16 15 C -0.53 -15.46 9.39 -34.44 -0.32 -15.79 16 16 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 17 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 19 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.49 10.33 7.55 -10.43 -0.08 10.25 16 24 O -0.50 -11.74 16.00 5.54 0.09 -11.65 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 30 H 0.13 1.92 6.21 -51.93 -0.32 1.60 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 33 H 0.09 0.94 7.54 -51.93 -0.39 0.55 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.59 7.56 -51.93 -0.39 0.20 16 37 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.05 1.49 8.04 -51.93 -0.42 1.07 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -34.68 339.58 -5.63 -40.30 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.72 Total: -2.49 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.35 Total: 4.97 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.95 Total: -39.91 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.61 Total: -25.11 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.68 -5.63 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042396762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.593 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds