Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48505 * 109.46829 * 240.00005 * 3 2 1 5 5 H 1.48494 * 109.47007 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47311 * 120.00331 * 3 2 1 7 7 C 1.37881 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00526 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99568 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47345 * 180.02562 * 9 7 2 11 11 C 1.46934 * 110.93775 * 300.82324 * 10 9 7 12 12 C 1.53364 * 109.85023 * 307.14854 * 11 10 9 13 13 N 1.46808 * 108.20716 * 309.83130 * 12 11 10 14 14 C 1.35719 * 128.02883 * 196.70921 * 13 12 11 15 15 C 1.35064 * 108.16661 * 179.73174 * 14 13 12 16 16 C 1.41103 * 107.48245 * 0.06329 * 15 14 13 17 17 C 1.34110 * 107.32750 * 0.04336 * 16 15 14 18 18 C 1.47355 * 111.00008 * 176.68995 * 10 9 7 19 19 H 1.09000 * 109.74823 * 193.60865 * 18 10 9 20 20 C 1.50692 * 109.75327 * 314.29892 * 18 10 9 21 21 C 1.38232 * 120.00010 * 75.37763 * 20 18 10 22 22 C 1.38237 * 120.00102 * 179.97438 * 21 20 18 23 23 C 1.38238 * 120.00092 * 0.27849 * 22 21 20 24 24 C 1.38239 * 119.99531 * 359.50818 * 23 22 21 25 25 C 1.38233 * 120.00114 * 255.34734 * 20 18 10 26 26 H 0.97003 * 119.99878 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47208 * 60.00057 * 9 7 2 28 28 H 1.09004 * 109.47204 * 299.99809 * 9 7 2 29 29 H 1.09005 * 109.35842 * 187.05379 * 11 10 9 30 30 H 1.09000 * 109.36052 * 67.25217 * 11 10 9 31 31 H 1.08999 * 109.71572 * 190.15066 * 12 11 10 32 32 H 1.09000 * 109.75091 * 69.53222 * 12 11 10 33 33 H 1.08007 * 125.91453 * 359.71948 * 14 13 12 34 34 H 1.08000 * 126.25594 * 180.09823 * 15 14 13 35 35 H 1.08005 * 126.33086 * 180.02562 * 16 15 14 36 36 H 1.07997 * 120.00225 * 359.97238 * 21 20 18 37 37 H 1.08001 * 119.99957 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.99782 * 179.72646 * 23 22 21 39 39 H 1.07998 * 119.99439 * 180.27869 * 24 23 22 40 40 H 1.07996 * 120.00135 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 3.0814 -3.5579 -1.1790 12 6 2.2338 -3.4570 -2.4532 13 7 1.2132 -4.5114 -2.4099 14 6 0.4628 -4.9912 -3.4339 15 6 -0.3435 -5.9594 -2.9475 16 6 -0.0781 -6.0781 -1.5668 17 6 0.8735 -5.1827 -1.2645 18 6 1.5049 -4.9095 0.0789 19 1 2.2164 -5.6996 0.3191 20 6 0.4370 -4.8460 1.1402 21 6 -0.7409 -4.1651 0.8956 22 6 -1.7207 -4.1073 1.8690 23 6 -1.5203 -4.7255 3.0891 24 6 -0.3442 -5.4101 3.3321 25 6 0.6350 -5.4691 2.3581 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 3.6916 -4.4602 -1.2203 30 1 3.7298 -2.6849 -1.1049 31 1 2.8682 -3.5950 -3.3287 32 1 1.7519 -2.4803 -2.4986 33 1 0.5032 -4.6565 -4.4600 34 1 -1.0600 -6.5375 -3.5123 35 1 -0.5536 -6.7631 -0.8803 36 1 -0.8956 -3.6783 -0.0559 37 1 -2.6412 -3.5757 1.6777 38 1 -2.2841 -4.6765 3.8511 39 1 -0.1895 -5.8969 4.2836 40 1 1.5549 -6.0019 2.5489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046515313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = 98.576988 kcal Electronic energy + Delta-G solvation = -22730.981914 eV Core-core repulsion = 19704.898243 eV Total energy + Delta-G solvation = -3026.083671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34181 -38.79495 -36.76711 -33.17538 -32.76021 -30.55438 -30.27723 -28.78339 -27.77875 -26.80350 -24.20944 -23.41907 -21.96551 -21.09185 -20.39033 -19.95809 -17.85905 -16.87999 -16.36370 -16.14515 -15.16855 -15.01602 -14.59559 -14.46792 -14.06491 -13.57747 -13.25925 -12.98420 -12.93821 -12.61764 -12.31031 -12.06128 -11.99015 -11.74603 -11.52511 -11.46519 -11.18366 -10.84180 -10.72355 -10.54358 -10.47946 -10.41124 -9.93113 -9.24204 -8.55867 -8.35086 -8.18549 -8.05113 -7.53071 -7.38548 -6.09243 -4.11583 1.84148 1.97298 2.74516 3.26414 3.32300 3.34112 3.42979 3.47445 4.24061 4.37681 4.89674 5.15098 5.22669 5.26128 5.33154 5.40382 5.46202 5.49616 5.55162 5.65584 5.67078 5.88413 6.01055 6.04093 6.06813 6.18465 6.27615 6.38270 6.46433 6.58184 6.70883 6.75387 6.93322 7.03834 7.18504 7.20317 7.29261 7.48867 7.51552 7.66786 7.72761 7.87142 7.98505 8.06400 8.41897 8.94668 9.52291 11.00856 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.008141 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.296334 B = 3438.725657 C = 4713.533958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.181 3.819 10 N -0.524 5.524 11 C 0.058 3.942 12 C 0.066 3.934 13 N -0.434 5.434 14 C -0.013 4.013 15 C -0.213 4.213 16 C -0.190 4.190 17 C -0.001 4.001 18 C 0.187 3.813 19 H 0.090 0.910 20 C -0.064 4.064 21 C -0.069 4.069 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.134 4.134 25 C -0.105 4.105 26 H 0.262 0.738 27 H -0.001 1.001 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.153 0.847 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 -10.480 -1.072 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.057 3.943 10 N -0.246 5.246 11 C -0.071 4.071 12 C -0.057 4.057 13 N -0.109 5.109 14 C -0.144 4.144 15 C -0.238 4.238 16 C -0.215 4.215 17 C -0.114 4.114 18 C 0.078 3.922 19 H 0.108 0.892 20 C -0.064 4.064 21 C -0.087 4.087 22 C -0.144 4.144 23 C -0.140 4.140 24 C -0.152 4.152 25 C -0.124 4.124 26 H 0.072 0.928 27 H 0.017 0.983 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.171 0.829 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.917 -9.992 -0.693 10.058 hybrid contribution -0.207 1.086 -0.888 1.418 sum 0.710 -8.906 -1.581 9.073 Atomic orbital electron populations 1.69947 1.05956 1.26888 1.50145 1.24950 0.94824 0.99120 0.95314 0.86621 0.79517 0.83013 0.78625 1.20357 1.21334 1.20135 1.21123 0.93268 0.90037 1.51102 0.92067 1.20138 0.90580 0.86445 0.97164 1.62693 1.22803 1.01881 1.37240 1.22335 0.95638 1.02629 0.86477 1.22731 0.90432 0.91219 1.01273 1.44202 1.30414 1.28959 1.07355 1.21555 0.98708 1.00951 0.93232 1.20813 1.04619 1.03202 0.95195 1.20325 1.02044 1.03320 0.95777 1.21079 1.02279 0.98501 0.89586 1.19408 0.92170 0.93816 0.86841 0.89202 1.19424 0.94406 0.98136 0.94470 1.21172 0.92410 0.95410 0.99711 1.21072 0.99434 0.99967 0.93883 1.21033 0.97532 0.98532 0.96948 1.20934 0.94420 1.01013 0.98841 1.20872 0.98673 0.99852 0.92969 0.92827 0.98322 0.93325 0.92020 0.87964 0.90473 0.88216 0.82907 0.85413 0.85434 0.85825 0.86532 0.86852 0.86721 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -13.76 8.37 -34.44 -0.29 -14.05 16 8 H 0.06 1.59 6.63 -52.49 -0.35 1.25 16 9 C 0.18 4.47 2.69 -4.98 -0.01 4.46 16 10 N -0.52 -10.92 4.91 -230.10 -1.13 -12.05 16 11 C 0.06 1.05 5.50 -3.62 -0.02 1.03 16 12 C 0.07 1.16 6.24 -3.69 -0.02 1.14 16 13 N -0.43 -7.93 2.90 -112.14 -0.32 -8.26 16 14 C -0.01 -0.22 11.55 -16.96 -0.20 -0.42 16 15 C -0.21 -3.53 10.87 -39.62 -0.43 -3.96 16 16 C -0.19 -3.36 10.01 -39.95 -0.40 -3.76 16 17 C 0.00 -0.02 4.58 -81.60 -0.37 -0.39 16 18 C 0.19 3.49 2.94 -69.66 -0.20 3.28 16 19 H 0.09 1.53 7.98 -51.93 -0.41 1.12 16 20 C -0.06 -1.19 4.14 -104.63 -0.43 -1.62 16 21 C -0.07 -1.36 6.26 -39.58 -0.25 -1.61 16 22 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 23 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 24 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 25 C -0.11 -1.72 9.67 -39.58 -0.38 -2.10 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.00 -0.02 5.24 -51.93 -0.27 -0.30 16 28 H 0.05 1.33 5.26 -51.93 -0.27 1.06 16 29 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.10 1.88 6.67 -51.93 -0.35 1.53 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 2.04 6.83 -51.93 -0.35 1.69 16 33 H 0.15 2.11 8.06 -52.48 -0.42 1.68 16 34 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 36 H 0.12 2.80 6.19 -52.49 -0.32 2.47 16 37 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.66 8.01 -52.49 -0.42 1.24 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -29.66 316.05 -10.55 -40.20 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.27 Total: 8.05 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -4.30 Total: -23.82 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.72 Total: -45.20 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.66 -10.55 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046515313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.780 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds