Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48505 * 109.46829 * 240.00005 * 3 2 1 5 5 H 1.48494 * 109.47007 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47311 * 120.00331 * 3 2 1 7 7 C 1.37881 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00526 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99568 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47345 * 180.02562 * 9 7 2 11 11 C 1.46934 * 110.93775 * 300.82324 * 10 9 7 12 12 C 1.53364 * 109.85023 * 307.14854 * 11 10 9 13 13 N 1.46808 * 108.20716 * 309.83130 * 12 11 10 14 14 C 1.35719 * 128.02883 * 196.70921 * 13 12 11 15 15 C 1.35064 * 108.16661 * 179.73174 * 14 13 12 16 16 C 1.41103 * 107.48245 * 0.06329 * 15 14 13 17 17 C 1.34110 * 107.32750 * 0.04336 * 16 15 14 18 18 C 1.47355 * 111.00008 * 176.68995 * 10 9 7 19 19 H 1.09000 * 109.74823 * 193.60865 * 18 10 9 20 20 C 1.50692 * 109.75327 * 314.29892 * 18 10 9 21 21 C 1.38232 * 120.00010 * 75.37763 * 20 18 10 22 22 C 1.38237 * 120.00102 * 179.97438 * 21 20 18 23 23 C 1.38238 * 120.00092 * 0.27849 * 22 21 20 24 24 C 1.38239 * 119.99531 * 359.50818 * 23 22 21 25 25 C 1.38233 * 120.00114 * 255.34734 * 20 18 10 26 26 H 0.97003 * 119.99878 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47208 * 60.00057 * 9 7 2 28 28 H 1.09004 * 109.47204 * 299.99809 * 9 7 2 29 29 H 1.09005 * 109.35842 * 187.05379 * 11 10 9 30 30 H 1.09000 * 109.36052 * 67.25217 * 11 10 9 31 31 H 1.08999 * 109.71572 * 190.15066 * 12 11 10 32 32 H 1.09000 * 109.75091 * 69.53222 * 12 11 10 33 33 H 1.08007 * 125.91453 * 359.71948 * 14 13 12 34 34 H 1.08000 * 126.25594 * 180.09823 * 15 14 13 35 35 H 1.08005 * 126.33086 * 180.02562 * 16 15 14 36 36 H 1.07997 * 120.00225 * 359.97238 * 21 20 18 37 37 H 1.08001 * 119.99957 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.99782 * 179.72646 * 23 22 21 39 39 H 1.07998 * 119.99439 * 180.27869 * 24 23 22 40 40 H 1.07996 * 120.00135 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 3.0814 -3.5579 -1.1790 12 6 2.2338 -3.4570 -2.4532 13 7 1.2132 -4.5114 -2.4099 14 6 0.4628 -4.9912 -3.4339 15 6 -0.3435 -5.9594 -2.9475 16 6 -0.0781 -6.0781 -1.5668 17 6 0.8735 -5.1827 -1.2645 18 6 1.5049 -4.9095 0.0789 19 1 2.2164 -5.6996 0.3191 20 6 0.4370 -4.8460 1.1402 21 6 -0.7409 -4.1651 0.8956 22 6 -1.7207 -4.1073 1.8690 23 6 -1.5203 -4.7255 3.0891 24 6 -0.3442 -5.4101 3.3321 25 6 0.6350 -5.4691 2.3581 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 3.6916 -4.4602 -1.2203 30 1 3.7298 -2.6849 -1.1049 31 1 2.8682 -3.5950 -3.3287 32 1 1.7519 -2.4803 -2.4986 33 1 0.5032 -4.6565 -4.4600 34 1 -1.0600 -6.5375 -3.5123 35 1 -0.5536 -6.7631 -0.8803 36 1 -0.8956 -3.6783 -0.0559 37 1 -2.6412 -3.5757 1.6777 38 1 -2.2841 -4.6765 3.8511 39 1 -0.1895 -5.8969 4.2836 40 1 1.5549 -6.0019 2.5489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046515313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = 82.049822 kcal Electronic energy + Delta-G solvation = -22731.698586 eV Core-core repulsion = 19704.898243 eV Total energy + Delta-G solvation = -3026.800343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.73361 -40.14679 -38.27903 -34.80427 -34.54232 -32.00565 -31.65118 -30.28687 -29.27545 -28.48019 -25.78869 -25.08194 -23.31812 -22.52670 -21.93105 -21.29624 -19.33248 -18.56966 -18.02798 -17.55402 -16.68965 -16.60850 -16.17018 -16.05542 -15.47266 -15.07483 -14.78853 -14.38901 -14.28683 -14.02404 -13.99611 -13.52392 -13.48897 -13.16796 -13.00376 -12.91642 -12.84530 -12.61894 -12.48493 -12.17483 -11.96456 -11.79133 -11.68427 -11.16525 -10.61698 -9.69727 -9.60531 -9.43078 -9.06947 -8.86166 -8.18861 -6.28293 0.51131 0.63166 1.37793 1.38753 1.41276 1.48566 2.07614 2.13549 2.38453 2.89870 3.14672 3.40549 3.77309 3.83616 3.94713 4.04314 4.14596 4.22092 4.27848 4.31778 4.34819 4.50968 4.65193 4.72640 4.73737 4.82610 4.85760 4.92116 5.15458 5.21415 5.29722 5.34810 5.41041 5.42739 5.62766 5.65138 5.71945 5.82741 6.01475 6.15655 6.18970 6.26774 6.33452 6.56052 6.56637 6.87894 7.40391 8.91163 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.008141 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.296334 B = 3438.725657 C = 4713.533958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.211 3.789 10 N -0.533 5.533 11 C 0.057 3.943 12 C 0.072 3.928 13 N -0.446 5.446 14 C -0.020 4.020 15 C -0.220 4.220 16 C -0.197 4.197 17 C -0.020 4.020 18 C 0.187 3.813 19 H 0.109 0.891 20 C -0.081 4.081 21 C -0.090 4.090 22 C -0.145 4.145 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.109 4.109 26 H 0.261 0.739 27 H -0.031 1.031 28 H 0.018 0.982 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.181 0.819 34 H 0.152 0.848 35 H 0.133 0.867 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 -11.589 -0.400 11.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.565 4.565 8 H 0.083 0.917 9 C 0.085 3.915 10 N -0.255 5.255 11 C -0.071 4.071 12 C -0.050 4.050 13 N -0.121 5.121 14 C -0.151 4.151 15 C -0.244 4.244 16 C -0.222 4.222 17 C -0.133 4.133 18 C 0.078 3.922 19 H 0.127 0.873 20 C -0.081 4.081 21 C -0.109 4.109 22 C -0.163 4.163 23 C -0.137 4.137 24 C -0.144 4.144 25 C -0.127 4.127 26 H 0.070 0.930 27 H -0.013 1.013 28 H 0.036 0.964 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.198 0.802 34 H 0.169 0.831 35 H 0.151 0.849 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.190 -11.122 -0.030 11.336 hybrid contribution -0.647 1.356 -1.072 1.846 sum 1.542 -9.767 -1.102 9.949 Atomic orbital electron populations 1.70104 1.07634 1.27540 1.51507 1.25803 0.95551 1.02755 0.95006 0.85573 0.78230 0.78534 0.79111 1.18986 1.21425 1.19567 1.21495 0.93596 0.91131 1.50234 0.91665 1.19575 0.90225 0.87422 0.94298 1.62571 1.22197 1.01850 1.38899 1.22397 0.95286 1.03694 0.85766 1.22615 0.90361 0.89491 1.02568 1.44340 1.30986 1.29092 1.07724 1.22114 0.98124 1.00636 0.94198 1.21159 1.04948 1.03448 0.94895 1.20525 1.01714 1.03357 0.96623 1.21189 1.03165 0.99220 0.89762 1.19499 0.92579 0.92866 0.87233 0.87317 1.19546 0.93942 0.98931 0.95702 1.20903 0.94271 0.97015 0.98728 1.21248 0.99273 1.00905 0.94845 1.21402 0.98695 0.97297 0.96351 1.21411 0.93324 0.99766 0.99887 1.21236 1.00078 0.99313 0.92122 0.93042 1.01307 0.96377 0.89245 0.88532 0.86838 0.92006 0.80198 0.83058 0.84911 0.90099 0.86491 0.83617 0.82776 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.53 -28.72 8.37 25.60 0.21 -28.51 16 8 H 0.07 3.42 6.63 -2.91 -0.02 3.40 16 9 C 0.21 10.86 2.69 85.56 0.23 11.09 16 10 N -0.53 -22.50 4.91 -881.89 -4.33 -26.83 16 11 C 0.06 2.04 5.50 86.42 0.48 2.51 16 12 C 0.07 2.54 6.24 86.44 0.54 3.08 16 13 N -0.45 -16.32 2.90 -508.70 -1.47 -17.80 16 14 C -0.02 -0.66 11.55 83.36 0.96 0.30 16 15 C -0.22 -7.13 10.87 22.24 0.24 -6.89 16 16 C -0.20 -7.01 10.01 22.03 0.22 -6.79 16 17 C -0.02 -0.76 4.58 40.88 0.19 -0.58 16 18 C 0.19 7.00 2.94 43.41 0.13 7.13 16 19 H 0.11 3.57 7.98 -2.39 -0.02 3.55 16 20 C -0.08 -3.04 4.14 -19.87 -0.08 -3.12 16 21 C -0.09 -3.79 6.26 22.27 0.14 -3.65 16 22 C -0.14 -5.31 10.05 22.27 0.22 -5.09 16 23 C -0.12 -3.54 10.05 22.27 0.22 -3.32 16 24 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 25 C -0.11 -3.39 9.67 22.27 0.22 -3.17 16 26 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 27 H -0.03 -1.75 5.24 -2.39 -0.01 -1.76 16 28 H 0.02 1.05 5.26 -2.39 -0.01 1.04 16 29 H 0.09 2.69 8.07 -2.38 -0.02 2.68 16 30 H 0.10 3.52 6.67 -2.39 -0.02 3.50 16 31 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.06 2.64 6.83 -2.39 -0.02 2.63 16 33 H 0.18 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.08 4.02 6.19 -2.91 -0.02 4.00 16 37 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 39 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 40 H 0.14 3.62 8.01 -2.91 -0.02 3.59 16 Total: -1.00 -66.75 316.05 2.15 -64.60 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 1.03 Total: 28.98 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 4.61 Total: -39.38 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -5.52 Total: -99.81 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -66.75 2.15 -64.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046515313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.652 kcal (2) G-P(sol) polarization free energy of solvation -66.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds