Wall clock time and date at job start Tue Mar 31 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99937 * 2 1 4 4 H 1.48498 * 109.47000 * 239.99904 * 3 2 1 5 5 H 1.48499 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46933 * 119.99748 * 3 2 1 7 7 C 1.37878 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99529 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00654 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47466 * 184.46578 * 9 7 2 11 11 C 1.46899 * 111.00358 * 63.70307 * 10 9 7 12 12 C 1.50702 * 109.47119 * 66.04654 * 11 10 9 13 13 C 1.38238 * 119.99522 * 90.00145 * 12 11 10 14 14 C 1.38238 * 119.99305 * 179.97438 * 13 12 11 15 15 C 1.38235 * 120.00334 * 0.08654 * 14 13 12 16 16 C 1.38229 * 119.99989 * 359.86844 * 15 14 13 17 17 C 1.38233 * 120.00130 * 269.98251 * 12 11 10 18 18 C 1.46905 * 110.99808 * 299.74921 * 10 9 7 19 19 C 1.50709 * 109.47010 * 287.91148 * 18 10 9 20 20 C 1.38675 * 120.41706 * 275.71101 * 19 18 10 21 21 C 1.38622 * 118.41866 * 179.78311 * 20 19 18 22 22 C 1.38232 * 119.16024 * 0.51734 * 21 20 19 23 23 N 1.31850 * 120.76322 * 359.71882 * 22 21 20 24 24 C 1.31888 * 121.72686 * 0.02562 * 23 22 21 25 25 H 0.97004 * 120.00243 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47278 * 64.45965 * 9 7 2 27 27 H 1.09007 * 109.47060 * 304.46179 * 9 7 2 28 28 H 1.09002 * 109.47034 * 306.05106 * 11 10 9 29 29 H 1.08998 * 109.47162 * 186.04698 * 11 10 9 30 30 H 1.07993 * 120.00270 * 359.70060 * 13 12 11 31 31 H 1.08000 * 119.99521 * 179.97438 * 14 13 12 32 32 H 1.07997 * 119.99646 * 179.97438 * 15 14 13 33 33 H 1.08004 * 120.00058 * 180.02562 * 16 15 14 34 34 H 1.08002 * 120.00004 * 359.97438 * 17 12 11 35 35 H 1.08999 * 109.47173 * 47.90578 * 18 10 9 36 36 H 1.08991 * 109.46999 * 167.91192 * 18 10 9 37 37 H 1.08002 * 120.79037 * 0.02562 * 20 19 18 38 38 H 1.08005 * 120.41993 * 180.21659 * 21 20 19 39 39 H 1.08003 * 119.61748 * 179.75023 * 22 21 20 40 40 H 1.07998 * 119.61436 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2020 -3.6136 0.1090 11 6 2.9207 -3.5698 1.3894 12 6 1.9520 -3.8140 2.5178 13 6 1.7155 -5.1025 2.9589 14 6 0.8274 -5.3264 3.9943 15 6 0.1745 -4.2620 4.5873 16 6 0.4117 -2.9735 4.1468 17 6 1.3004 -2.7494 3.1119 18 6 3.1401 -3.6170 -1.0215 19 6 2.4194 -4.0531 -2.2711 20 6 2.2615 -5.4010 -2.5564 21 6 1.5878 -5.7556 -3.7148 22 6 1.1086 -4.7610 -4.5467 23 7 1.2815 -3.4889 -4.2459 24 6 1.9129 -3.1149 -3.1501 25 1 -0.4851 0.8401 -0.0004 26 1 0.6860 -2.5926 -0.9269 27 1 0.5654 -2.5229 0.8476 28 1 3.3831 -2.5905 1.5131 29 1 3.6920 -4.3399 1.3996 30 1 2.2212 -5.9346 2.4918 31 1 0.6423 -6.3331 4.3387 32 1 -0.5197 -4.4371 5.3959 33 1 -0.0981 -2.1418 4.6103 34 1 1.4857 -1.7426 2.7676 35 1 3.5404 -2.6133 -1.1645 36 1 3.9571 -4.3078 -0.8134 37 1 2.6507 -6.1564 -1.8899 38 1 1.4433 -6.7959 -3.9667 39 1 0.5862 -5.0289 -5.4531 40 1 2.0356 -2.0632 -2.9374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078662472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:21 Heat of formation + Delta-G solvation = 63.621903 kcal Electronic energy + Delta-G solvation = -21686.271441 eV Core-core repulsion = 18658.672003 eV Total energy + Delta-G solvation = -3027.599437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.74413 -38.83616 -36.57500 -32.74678 -32.38257 -31.47344 -30.38584 -30.15420 -27.23905 -25.95951 -24.16214 -23.05741 -22.31434 -21.91899 -20.76886 -19.64135 -16.83871 -16.47089 -16.07672 -15.81449 -15.06635 -14.89220 -14.67650 -14.47270 -14.41206 -13.55684 -13.19169 -13.12513 -12.86559 -12.60352 -12.43619 -12.26600 -12.03714 -11.43515 -11.30836 -11.07342 -10.88134 -10.86591 -10.60577 -10.38356 -10.14958 -10.02833 -9.71862 -9.32222 -8.95506 -8.53080 -8.48311 -8.32707 -8.17091 -7.24033 -6.06132 -4.16402 1.57023 1.74710 1.90701 1.96120 3.24588 3.31273 3.32725 4.19862 4.35912 4.36595 4.91086 5.17661 5.20013 5.23485 5.34828 5.37900 5.42421 5.44178 5.51676 5.60289 5.71348 5.88824 5.92209 6.02633 6.06556 6.21241 6.29350 6.35564 6.47099 6.52042 6.58022 6.67861 6.83976 6.94348 7.06552 7.16871 7.24915 7.29971 7.51214 7.57295 7.87905 7.96643 8.18078 8.23890 8.46427 8.93964 9.50171 10.98184 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.007366 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.360822 B = 3800.305358 C = 5772.881674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.553 4.553 8 H 0.056 0.944 9 C 0.182 3.818 10 N -0.532 5.532 11 C 0.097 3.903 12 C -0.061 4.061 13 C -0.108 4.108 14 C -0.135 4.135 15 C -0.131 4.131 16 C -0.127 4.127 17 C -0.088 4.088 18 C 0.096 3.904 19 C -0.106 4.106 20 C -0.064 4.064 21 C -0.185 4.185 22 C 0.082 3.918 23 N -0.490 5.490 24 C 0.121 3.879 25 H 0.263 0.737 26 H 0.028 0.972 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.146 0.854 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.338 -10.447 1.658 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.592 4.592 8 H 0.074 0.926 9 C 0.057 3.943 10 N -0.255 5.255 11 C -0.031 4.031 12 C -0.061 4.061 13 C -0.127 4.127 14 C -0.153 4.153 15 C -0.149 4.149 16 C -0.145 4.145 17 C -0.107 4.107 18 C -0.033 4.033 19 C -0.108 4.108 20 C -0.091 4.091 21 C -0.205 4.205 22 C -0.075 4.075 23 N -0.199 5.199 24 C -0.036 4.036 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.152 0.848 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.163 0.837 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.577 -10.120 1.067 10.787 hybrid contribution 0.946 1.099 0.596 1.568 sum 4.524 -9.021 1.663 10.228 Atomic orbital electron populations 1.69938 1.05925 1.26937 1.49209 1.24906 0.94647 0.98824 0.94908 0.86821 0.79813 0.83751 0.78653 1.20200 1.21241 1.20307 1.21608 0.93046 0.91964 1.52540 0.92577 1.19863 0.91143 0.85006 0.98326 1.62613 1.16389 1.47461 0.99038 1.20900 0.93536 1.00369 0.88267 1.19796 0.97697 0.92810 0.95800 1.20942 0.98663 0.96343 0.96738 1.20969 0.98304 0.98265 0.97740 1.21002 1.00320 0.93131 1.00476 1.21113 0.98914 0.96602 0.97845 1.21368 0.94918 1.00172 0.94212 1.20875 0.93329 1.00542 0.88527 1.20850 0.99278 0.93679 0.97029 1.21397 0.96125 0.95951 0.95596 1.22005 1.01422 1.00457 0.96572 1.22627 0.97400 0.88511 0.98964 1.67711 1.13968 1.19189 1.18993 1.22926 0.91427 1.00787 0.88507 0.92700 0.95398 0.93946 0.92770 0.92238 0.86780 0.87031 0.87089 0.86746 0.84833 0.91998 0.91967 0.85448 0.85660 0.83695 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.83 13.29 55.43 0.74 -24.10 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.88 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.55 -13.84 7.20 -34.44 -0.25 -14.09 16 8 H 0.06 1.38 5.95 -52.48 -0.31 1.07 16 9 C 0.18 4.38 4.57 -4.98 -0.02 4.36 16 10 N -0.53 -10.56 4.65 -238.96 -1.11 -11.67 16 11 C 0.10 1.76 4.94 -4.98 -0.02 1.73 16 12 C -0.06 -1.10 4.89 -104.62 -0.51 -1.61 16 13 C -0.11 -1.74 9.70 -39.58 -0.38 -2.12 16 14 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 15 C -0.13 -1.99 10.05 -39.59 -0.40 -2.38 16 16 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 17 C -0.09 -1.69 7.91 -39.58 -0.31 -2.00 16 18 C 0.10 1.71 4.97 -4.97 -0.02 1.68 16 19 C -0.11 -1.88 4.91 -104.48 -0.51 -2.39 16 20 C -0.06 -0.98 9.88 -39.28 -0.39 -1.37 16 21 C -0.18 -2.58 10.11 -39.44 -0.40 -2.98 16 22 C 0.08 1.27 11.18 -17.55 -0.20 1.07 16 23 N -0.49 -9.22 10.36 -13.25 -0.14 -9.36 16 24 C 0.12 2.34 9.72 -17.55 -0.17 2.17 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.03 0.75 6.66 -51.93 -0.35 0.41 16 27 H 0.04 1.13 5.91 -51.93 -0.31 0.82 16 28 H 0.05 1.06 6.58 -51.93 -0.34 0.72 16 29 H 0.06 0.93 7.80 -51.93 -0.41 0.52 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 34 H 0.13 2.86 7.85 -52.49 -0.41 2.45 16 35 H 0.06 1.20 6.01 -51.93 -0.31 0.89 16 36 H 0.06 0.95 7.79 -51.93 -0.40 0.54 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.15 1.77 8.06 -52.48 -0.42 1.34 16 40 H 0.16 3.33 8.06 -52.49 -0.42 2.91 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -28.62 332.06 -10.37 -39.00 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.36 Total: 6.79 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -4.49 Total: -21.11 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.51 Total: -45.13 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.62 -10.37 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078662472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.618 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds