Wall clock time and date at job start Tue Mar 31 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36445 * 125.13302 * 2 1 4 4 H 0.96998 * 124.90510 * 0.27280 * 3 2 1 5 5 C 1.37815 * 110.20013 * 180.02562 * 3 2 1 6 6 C 1.39177 * 133.28292 * 180.02562 * 5 3 2 7 7 C 1.37755 * 119.78353 * 179.97438 * 6 5 3 8 8 C 1.38786 * 120.64049 * 0.02562 * 7 6 5 9 9 C 1.36701 * 120.47617 * 359.97438 * 8 7 6 10 10 C 1.39386 * 119.78621 * 0.02562 * 9 8 7 11 11 C 1.35781 * 125.14213 * 180.02562 * 2 1 3 12 12 C 1.47607 * 126.68177 * 0.02562 * 11 2 1 13 13 C 1.31268 * 117.82036 * 269.71050 * 12 11 2 14 14 C 1.50344 * 123.41718 * 180.58341 * 13 12 11 15 15 N 1.46987 * 109.18461 * 349.40358 * 14 13 12 16 16 C 1.36941 * 121.33267 * 223.05809 * 15 14 13 17 17 H 1.07996 * 120.00218 * 155.86174 * 16 15 14 18 18 C 1.38821 * 119.99577 * 335.85662 * 16 15 14 19 19 N 1.31610 * 119.99898 * 344.44818 * 18 16 15 20 20 Si 1.86803 * 119.99605 * 164.44643 * 18 16 15 21 21 H 1.48491 * 109.47330 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46907 * 120.00512 * 20 18 16 23 23 H 1.48504 * 109.46807 * 239.99969 * 20 18 16 24 24 C 1.47306 * 117.33818 * 43.07726 * 15 14 13 25 25 C 1.49991 * 117.81945 * 89.97822 * 12 11 2 26 26 H 1.08995 * 109.47541 * 90.02479 * 1 2 3 27 27 H 1.09003 * 109.46946 * 210.02317 * 1 2 3 28 28 H 1.09001 * 109.47412 * 330.01792 * 1 2 3 29 29 H 1.07996 * 120.10624 * 359.97438 * 6 5 3 30 30 H 1.08000 * 119.67714 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.76301 * 179.97438 * 8 7 6 32 32 H 1.07997 * 120.11101 * 179.97438 * 9 8 7 33 33 H 1.08000 * 118.29372 * 0.84122 * 13 12 11 34 34 H 1.08993 * 109.66944 * 229.39190 * 14 13 12 35 35 H 1.08996 * 109.34699 * 109.21596 * 14 13 12 36 36 H 0.97008 * 119.99897 * 179.97438 * 19 18 16 37 37 H 1.09008 * 109.76408 * 178.07437 * 24 15 14 38 38 H 1.08998 * 109.76648 * 57.30516 * 24 15 14 39 39 H 1.09006 * 109.31138 * 281.27567 * 25 12 11 40 40 H 1.09001 * 109.31305 * 40.88901 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2923 1.1159 0.0000 4 1 1.9611 2.0276 0.0038 5 6 3.6239 0.7607 -0.0006 6 6 4.8069 1.4938 -0.0004 7 6 6.0183 0.8379 -0.0006 8 6 6.0718 -0.5489 -0.0016 9 6 4.9212 -1.2871 -0.0018 10 6 3.6852 -0.6428 -0.0016 11 6 2.2886 -1.1103 -0.0005 12 6 1.8282 -2.5127 -0.0017 13 6 1.6422 -3.0974 1.1588 14 6 1.1883 -4.5233 1.3042 15 7 0.7589 -5.0297 -0.0072 16 6 -0.3791 -5.7791 -0.1434 17 1 -0.8912 -5.8155 -1.0935 18 6 -0.8743 -6.4921 0.9399 19 7 -0.1129 -6.7031 1.9924 20 14 -2.6216 -7.1519 0.9036 21 1 -3.2636 -6.7825 -0.3834 22 1 -2.5950 -8.6307 1.0366 23 1 -3.3948 -6.5676 2.0288 24 6 1.6020 -4.6991 -1.1691 25 6 1.6098 -3.1767 -1.3288 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8901 0.5135 29 1 4.7753 2.5733 0.0000 30 1 6.9353 1.4085 -0.0008 31 1 7.0293 -1.0485 -0.0021 32 1 4.9697 -2.3660 -0.0029 33 1 1.8207 -2.5231 2.0558 34 1 0.3548 -4.5733 2.0047 35 1 2.0146 -5.1292 1.6759 36 1 -0.4591 -7.2010 2.7495 37 1 1.1908 -5.1617 -2.0664 38 1 2.6177 -5.0573 -1.0013 39 1 0.6543 -2.8525 -1.7412 40 1 2.4117 -2.8926 -2.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080915551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:25 Heat of formation + Delta-G solvation = 88.275766 kcal Electronic energy + Delta-G solvation = -21585.855817 eV Core-core repulsion = 18559.325452 eV Total energy + Delta-G solvation = -3026.530365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14924 -37.44195 -36.82999 -33.65972 -31.77560 -30.85637 -30.38775 -29.58983 -28.73659 -26.67235 -25.06231 -22.64048 -22.17098 -21.77645 -21.10933 -19.48421 -17.68240 -17.37619 -16.14589 -15.63541 -15.05411 -14.93761 -14.59568 -14.23364 -13.79088 -13.64105 -13.49497 -13.33159 -12.86242 -12.59941 -12.59490 -12.25179 -12.11400 -11.54035 -11.43331 -11.34646 -11.24274 -10.95747 -10.77274 -10.67056 -10.31937 -10.23625 -9.75596 -9.56215 -9.31864 -8.59206 -8.03828 -7.75933 -7.35822 -6.66229 -5.73654 -3.12037 1.24459 1.74193 2.80417 2.97498 3.19934 3.40387 3.47982 3.50105 4.05044 4.53978 4.81800 4.91468 5.08359 5.18658 5.35972 5.40805 5.45847 5.58389 5.63254 5.64957 5.73930 5.85473 5.98637 6.03797 6.09950 6.16879 6.26392 6.33946 6.50405 6.55448 6.64761 6.74056 6.77996 6.93522 6.98507 7.05641 7.30100 7.34889 7.41182 7.56563 7.65286 7.81795 7.96821 8.44815 9.26291 9.89366 10.48421 11.36586 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028040 B = 0.004267 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.332170 B = 6560.757119 C = 7046.690023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.075 3.925 3 N -0.594 5.594 4 H 0.410 0.590 5 C 0.093 3.907 6 C -0.136 4.136 7 C -0.105 4.105 8 C -0.154 4.154 9 C -0.062 4.062 10 C -0.092 4.092 11 C -0.117 4.117 12 C -0.073 4.073 13 C -0.141 4.141 14 C 0.199 3.801 15 N -0.595 5.595 16 C -0.243 4.243 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.909 5.909 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.144 3.856 25 C -0.084 4.084 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.037 0.963 36 H 0.252 0.748 37 H 0.056 0.944 38 H 0.023 0.977 39 H 0.061 0.939 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.387 16.562 -3.671 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.032 4.032 3 N -0.198 5.198 4 H 0.246 0.754 5 C -0.014 4.014 6 C -0.157 4.157 7 C -0.124 4.124 8 C -0.173 4.173 9 C -0.081 4.081 10 C -0.096 4.096 11 C -0.124 4.124 12 C -0.074 4.074 13 C -0.161 4.161 14 C 0.075 3.925 15 N -0.318 5.318 16 C -0.372 4.372 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.554 5.554 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.018 3.982 25 C -0.123 4.123 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.236 16.552 -3.536 18.407 hybrid contribution -0.932 0.288 0.166 0.989 sum 6.304 16.839 -3.370 18.294 Atomic orbital electron populations 1.20431 0.87549 1.03666 1.03029 1.20462 0.93225 0.85117 1.04405 1.41540 1.03991 1.07912 1.66312 0.75410 1.18194 0.84423 0.94220 1.04592 1.19954 0.89875 0.98508 1.07339 1.20712 0.96358 0.94508 1.00841 1.20602 0.97939 0.93831 1.04923 1.20327 0.90465 0.99944 0.97338 1.19202 0.93322 0.91595 1.05523 1.19236 0.89801 0.92915 1.10415 1.18636 1.03491 0.89975 0.95250 1.23556 0.97692 0.99015 0.95815 1.19693 0.98672 0.85657 0.88514 1.44129 1.25718 1.59814 1.02170 1.19235 0.99561 1.20773 0.97667 0.91387 1.24975 0.98620 0.98297 0.98067 1.70030 1.34379 1.43499 1.07528 0.86215 0.84858 0.78257 0.77433 1.20349 1.21824 1.21674 1.20953 0.94111 0.91609 0.91552 1.20723 0.99975 0.97922 0.93724 0.90696 0.89024 0.91972 0.86764 0.86199 0.86301 0.85949 0.89174 0.89111 0.94534 0.93750 0.92591 0.95920 0.92088 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 10.19 36.01 0.37 -0.73 16 2 C 0.07 1.09 7.13 -81.42 -0.58 0.51 16 3 N -0.59 -7.44 6.04 -6.70 -0.04 -7.48 16 4 H 0.41 3.69 8.96 -40.82 -0.37 3.32 16 5 C 0.09 1.31 7.26 -83.98 -0.61 0.70 16 6 C -0.14 -1.63 10.08 -39.41 -0.40 -2.02 16 7 C -0.10 -1.20 10.01 -39.56 -0.40 -1.60 16 8 C -0.15 -1.93 9.98 -39.93 -0.40 -2.33 16 9 C -0.06 -0.94 10.04 -39.71 -0.40 -1.33 16 10 C -0.09 -1.49 6.36 -104.95 -0.67 -2.16 16 11 C -0.12 -1.99 5.40 -103.28 -0.56 -2.55 16 12 C -0.07 -1.38 5.16 -102.93 -0.53 -1.91 16 13 C -0.14 -2.91 9.58 -36.27 -0.35 -3.26 16 14 C 0.20 4.89 5.23 -5.10 -0.03 4.86 16 15 N -0.60 -15.15 3.00 -173.72 -0.52 -15.67 16 16 C -0.24 -6.69 9.70 -15.05 -0.15 -6.84 16 17 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16 18 C 0.00 -0.05 5.00 -17.43 -0.09 -0.14 16 19 N -0.91 -26.40 11.08 55.49 0.61 -25.79 16 20 Si 0.90 21.74 29.58 -169.99 -5.03 16.71 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 C 0.14 3.11 6.56 -3.56 -0.02 3.09 16 25 C -0.08 -1.59 5.95 -28.18 -0.17 -1.76 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.30 7.84 -51.93 -0.41 0.89 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.09 1.76 7.94 -52.49 -0.42 1.34 16 34 H 0.09 2.45 6.40 -51.93 -0.33 2.11 16 35 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.06 1.16 7.96 -51.92 -0.41 0.75 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.91 8.13 -51.93 -0.42 0.48 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -31.03 331.05 -10.67 -41.70 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.71 Total: 3.03 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -4.97 Total: -17.49 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.05 Total: -48.95 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.03 -10.67 -41.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080915551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.974 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds