Wall clock time and date at job start Tue Mar 31 2020 06:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38251 * 119.99870 * 2 1 4 4 C 1.38218 * 120.00199 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99337 * 0.26963 * 4 3 2 6 6 C 1.38209 * 120.00135 * 359.51553 * 5 4 3 7 7 C 1.50700 * 119.99846 * 180.25252 * 6 5 4 8 8 N 1.46505 * 109.47487 * 263.63135 * 7 6 5 9 9 C 1.36934 * 119.99953 * 276.29184 * 8 7 6 10 10 H 1.08000 * 120.00347 * 349.99865 * 9 8 7 11 11 C 1.38817 * 120.00025 * 169.99284 * 9 8 7 12 12 N 1.31621 * 119.99911 * 3.42359 * 11 9 8 13 13 Si 1.86802 * 120.00180 * 183.42659 * 11 9 8 14 14 H 1.48497 * 109.47034 * 60.00030 * 13 11 9 15 15 H 1.48500 * 109.47084 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46713 * 299.99983 * 13 11 9 17 17 C 1.46499 * 120.00167 * 96.28476 * 8 7 6 18 18 C 1.50697 * 109.47311 * 270.65689 * 17 8 7 19 19 C 1.38233 * 119.62356 * 96.17163 * 18 17 8 20 20 C 1.38624 * 119.16176 * 179.75605 * 19 18 17 21 21 C 1.38672 * 118.42059 * 0.50206 * 20 19 18 22 22 C 1.38178 * 119.16542 * 359.74186 * 21 20 19 23 23 N 1.31858 * 119.61608 * 276.44001 * 18 17 8 24 24 C 1.38214 * 120.00064 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47114 * 90.00350 * 1 2 3 26 26 H 1.08993 * 109.47144 * 210.00131 * 1 2 3 27 27 H 1.09002 * 109.47210 * 330.00227 * 1 2 3 28 28 H 1.08005 * 120.00572 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00160 * 180.02562 * 4 3 2 30 30 H 1.08007 * 119.99533 * 179.72527 * 5 4 3 31 31 H 1.08998 * 109.47583 * 23.62987 * 7 6 5 32 32 H 1.09000 * 109.47410 * 143.63427 * 7 6 5 33 33 H 0.97000 * 120.00105 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.46843 * 30.65111 * 17 8 7 35 35 H 1.08994 * 109.47372 * 150.64968 * 17 8 7 36 36 H 1.08000 * 120.41554 * 359.97438 * 19 18 17 37 37 H 1.08001 * 120.78934 * 180.26661 * 20 19 18 38 38 H 1.08003 * 120.41655 * 179.71121 * 21 20 19 39 39 H 1.08003 * 119.61845 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.00082 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0000 -0.0046 6 6 3.5806 -1.1969 -0.0001 7 6 4.3341 -2.5020 0.0001 8 7 4.4414 -3.0043 -1.3720 9 6 3.4118 -3.7209 -1.9212 10 1 2.5942 -4.0547 -1.2995 11 6 3.4189 -4.0182 -3.2771 12 7 4.4469 -3.6701 -4.0218 13 14 1.9695 -4.9121 -4.0449 14 1 0.7365 -4.1053 -3.8610 15 1 2.2212 -5.1089 -5.4952 16 1 1.7990 -6.2334 -3.3888 17 6 5.6500 -2.7398 -2.1565 18 6 5.4922 -1.4377 -2.8986 19 6 6.0122 -0.2762 -2.3588 20 6 5.8660 0.9153 -3.0520 21 6 5.1902 0.8958 -4.2627 22 6 4.6931 -0.3029 -4.7372 23 7 4.8552 -1.4187 -4.0529 24 6 2.1981 -1.1970 -0.0005 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0010 30 1 5.3517 0.0000 -0.0086 31 1 5.3324 -2.3452 0.4086 32 1 3.8011 -3.2293 0.6125 33 1 4.4520 -3.8781 -4.9692 34 1 6.5095 -2.6757 -1.4892 35 1 5.8039 -3.5487 -2.8705 36 1 6.5288 -0.2975 -1.4106 37 1 6.2657 1.8375 -2.6567 38 1 5.0537 1.8063 -4.8274 39 1 4.1651 -0.3264 -5.6792 40 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081012248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:02 Heat of formation + Delta-G solvation = 116.260443 kcal Electronic energy + Delta-G solvation = -22680.153687 eV Core-core repulsion = 19654.836828 eV Total energy + Delta-G solvation = -3025.316859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.21366 -38.60574 -35.69538 -32.69434 -31.51743 -31.22975 -30.98360 -29.57961 -26.55301 -25.92892 -25.41813 -22.53975 -22.28962 -21.41891 -20.35545 -19.65089 -16.97033 -16.03811 -15.65612 -15.37675 -14.78561 -14.67112 -14.57522 -14.10604 -13.51622 -13.26224 -13.15281 -12.96890 -12.63279 -12.36702 -12.24344 -11.92751 -11.91834 -11.53359 -11.11177 -11.05271 -10.85657 -10.71220 -10.42352 -10.30424 -10.10600 -9.96243 -9.66801 -8.81502 -8.51766 -8.21573 -8.10370 -8.01494 -7.75869 -6.67271 -5.35407 -2.95465 1.96760 2.06261 2.17728 2.35172 3.46515 3.51708 3.52554 4.36364 4.62658 4.94517 5.32125 5.32533 5.42017 5.51322 5.55346 5.61320 5.68899 5.76777 5.83216 5.86442 5.92167 5.94644 6.04584 6.13301 6.17471 6.20647 6.30660 6.51264 6.60331 6.64346 6.73686 6.76330 6.87146 7.07179 7.09466 7.11466 7.18990 7.42607 7.69540 7.70976 7.81862 7.96673 8.55814 9.34340 9.49423 9.95097 10.35997 11.42514 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.009224 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.867946 B = 3034.926370 C = 4058.919421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.123 4.123 5 C -0.117 4.117 6 C -0.078 4.078 7 C 0.177 3.823 8 N -0.573 5.573 9 C -0.270 4.270 10 H 0.070 0.930 11 C 0.011 3.989 12 N -0.845 5.845 13 Si 0.900 3.100 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.288 1.288 17 C 0.184 3.816 18 C 0.158 3.842 19 C -0.184 4.184 20 C -0.093 4.093 21 C -0.206 4.206 22 C 0.071 3.929 23 N -0.376 5.376 24 C -0.098 4.098 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.253 0.747 34 H 0.014 0.986 35 H 0.149 0.851 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 8.189 5.371 9.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.159 4.159 4 C -0.141 4.141 5 C -0.135 4.135 6 C -0.081 4.081 7 C 0.050 3.950 8 N -0.291 5.291 9 C -0.399 4.399 10 H 0.087 0.913 11 C -0.189 4.189 12 N -0.488 5.488 13 Si 0.731 3.269 14 H -0.216 1.216 15 H -0.218 1.218 16 H -0.214 1.214 17 C 0.058 3.942 18 C 0.017 3.983 19 C -0.205 4.205 20 C -0.119 4.119 21 C -0.226 4.226 22 C -0.087 4.087 23 N -0.084 5.084 24 C -0.117 4.117 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.166 0.834 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.230 7.261 4.820 8.718 hybrid contribution -0.734 1.117 -0.387 1.392 sum -0.504 8.378 4.433 9.492 Atomic orbital electron populations 1.20715 0.92187 1.01776 1.01833 1.19816 0.95388 0.93540 1.00879 1.20735 0.94234 0.96714 1.04234 1.20896 0.94153 0.97455 1.01580 1.20981 0.99151 0.92166 1.01239 1.21098 0.94295 0.97246 0.95509 1.19996 0.96551 0.89974 0.88447 1.44189 1.17046 1.58340 1.09563 1.18991 1.01335 1.27592 0.91958 0.91254 1.24844 0.97782 1.00201 0.96074 1.69692 1.27361 1.45972 1.05735 0.86423 0.82876 0.79215 0.78382 1.21632 1.21754 1.21445 1.20798 0.85333 0.94999 0.93089 1.22530 0.89036 0.96296 0.90404 1.22052 1.03756 0.94282 1.00434 1.21201 0.98206 0.97529 0.94973 1.21894 1.03295 0.99269 0.98183 1.23079 0.97153 0.89108 0.99381 1.68574 1.09050 1.24848 1.05890 1.20833 0.94061 0.96805 0.99979 0.91737 0.91959 0.92385 0.87541 0.87495 0.87070 0.93253 0.92945 0.93446 0.96787 0.83439 0.86941 0.87132 0.87236 0.85159 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 36.01 0.36 -1.20 16 2 C -0.10 -1.69 5.88 -104.63 -0.62 -2.31 16 3 C -0.14 -2.34 9.70 -39.58 -0.38 -2.73 16 4 C -0.12 -2.05 10.05 -39.58 -0.40 -2.45 16 5 C -0.12 -2.09 7.89 -39.58 -0.31 -2.40 16 6 C -0.08 -1.53 5.41 -104.63 -0.57 -2.09 16 7 C 0.18 3.56 5.85 -5.19 -0.03 3.53 16 8 N -0.57 -13.54 2.51 -175.99 -0.44 -13.99 16 9 C -0.27 -7.05 9.76 -15.06 -0.15 -7.20 16 10 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 11 C 0.01 0.30 5.42 -17.43 -0.09 0.21 16 12 N -0.85 -22.65 6.35 55.49 0.35 -22.30 16 13 Si 0.90 21.78 29.56 -169.99 -5.02 16.76 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.18 4.26 5.38 -5.20 -0.03 4.23 16 18 C 0.16 3.58 6.31 -82.58 -0.52 3.06 16 19 C -0.18 -3.54 7.40 -39.44 -0.29 -3.84 16 20 C -0.09 -1.64 10.18 -39.28 -0.40 -2.04 16 21 C -0.21 -3.73 10.11 -39.44 -0.40 -4.13 16 22 C 0.07 1.49 11.18 -17.55 -0.20 1.30 16 23 N -0.38 -9.05 7.15 -9.47 -0.07 -9.12 16 24 C -0.10 -1.91 9.36 -39.59 -0.37 -2.28 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 27 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.86 5.99 -52.48 -0.31 1.54 16 31 H 0.05 0.89 7.73 -51.93 -0.40 0.49 16 32 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.01 0.29 7.75 -51.93 -0.40 -0.11 16 35 H 0.15 3.85 5.30 -53.41 -0.28 3.57 16 36 H 0.11 1.94 6.58 -52.49 -0.35 1.59 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.13 2.47 8.06 -52.48 -0.42 2.05 16 40 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -28.56 327.02 -10.16 -38.72 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.51 Total: 5.34 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -4.39 Total: -20.34 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.16 Total: -45.40 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.56 -10.16 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081012248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.980 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds