Wall clock time and date at job start Tue Mar 31 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00225 * 2 1 4 4 H 1.48502 * 109.46820 * 269.99820 * 3 2 1 5 5 H 1.48501 * 109.47285 * 29.99788 * 3 2 1 6 6 H 1.48498 * 109.47387 * 150.00027 * 3 2 1 7 7 C 1.37876 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00545 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47596 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47373 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00221 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.47127 * 34.99813 * 12 11 10 14 14 C 1.50699 * 109.47271 * 274.99658 * 12 11 10 15 15 C 1.38228 * 120.00009 * 319.73067 * 14 12 11 16 16 C 1.38238 * 120.00026 * 179.80986 * 15 14 12 17 17 C 1.38240 * 120.00126 * 0.41238 * 16 15 14 18 18 C 1.38237 * 119.99494 * 359.81779 * 17 16 15 19 19 C 1.38238 * 120.00435 * 359.97438 * 18 17 16 20 20 C 1.50707 * 109.47624 * 154.99666 * 12 11 10 21 21 C 1.38227 * 119.62024 * 244.98172 * 20 12 11 22 22 C 1.38627 * 119.15702 * 179.78495 * 21 20 12 23 23 C 1.38669 * 118.42389 * 0.47826 * 22 21 20 24 24 C 1.38186 * 119.16143 * 359.49762 * 23 22 21 25 25 N 1.31856 * 119.61172 * 64.99924 * 20 12 11 26 26 H 0.97003 * 120.00007 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46884 * 59.99473 * 9 7 2 28 28 H 1.09003 * 109.47094 * 300.00466 * 9 7 2 29 29 H 1.09000 * 109.47045 * 59.99926 * 10 9 7 30 30 H 1.09005 * 109.46893 * 299.99842 * 10 9 7 31 31 H 1.00908 * 110.99973 * 303.95103 * 11 10 9 32 32 H 1.07999 * 120.00129 * 359.97438 * 15 14 12 33 33 H 1.08000 * 120.00303 * 180.20694 * 16 15 14 34 34 H 1.07988 * 120.00364 * 179.79374 * 17 16 15 35 35 H 1.07999 * 119.99749 * 179.97438 * 18 17 16 36 36 H 1.07992 * 120.00035 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.41915 * 0.04021 * 21 20 12 38 38 H 1.08008 * 120.78688 * 180.22921 * 22 21 20 39 39 H 1.08002 * 120.42244 * 179.78279 * 23 22 21 40 40 H 1.07996 * 119.61757 * 180.25243 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0462 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 7 1.5106 -4.9343 0.0033 12 6 2.4350 -6.0759 0.0037 13 1 3.3180 -5.8283 0.5930 14 6 2.8472 -6.3890 -1.4116 15 6 1.9159 -6.3319 -2.4315 16 6 2.2949 -6.6152 -3.7303 17 6 3.6034 -6.9641 -4.0081 18 6 4.5337 -7.0259 -2.9874 19 6 4.1557 -6.7383 -1.6892 20 6 1.7504 -7.2765 0.6047 21 6 2.2187 -7.8065 1.7923 22 6 1.5790 -8.9082 2.3390 23 6 0.4937 -9.4442 1.6625 24 6 0.0821 -8.8601 0.4797 25 7 0.7120 -7.8093 -0.0087 26 1 -0.4850 0.8401 -0.0004 27 1 0.6239 -2.5575 -0.8880 28 1 0.6246 -2.5563 0.8919 29 1 2.8717 -3.6036 0.8927 30 1 2.8717 -3.6052 -0.8874 31 1 0.8739 -4.9839 0.7845 32 1 0.8927 -6.0632 -2.2140 33 1 1.5680 -6.5673 -4.5277 34 1 3.8988 -7.1887 -5.0222 35 1 5.5559 -7.2988 -3.2043 36 1 4.8824 -6.7870 -0.8918 37 1 3.0695 -7.3654 2.2902 38 1 1.9205 -9.3413 3.2676 39 1 -0.0263 -10.3045 2.0574 40 1 -0.7649 -9.2690 -0.0511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096981639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:04 Heat of formation + Delta-G solvation = 56.256367 kcal Electronic energy + Delta-G solvation = -21033.928296 eV Core-core repulsion = 18006.009466 eV Total energy + Delta-G solvation = -3027.918831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.43753 -38.83227 -36.13054 -33.41570 -32.45018 -31.78413 -30.60042 -30.45603 -28.78524 -25.73066 -23.78244 -23.43507 -22.61868 -22.11149 -20.54933 -20.24291 -17.06244 -16.69952 -16.40264 -16.01348 -15.72088 -14.96511 -14.87126 -14.53949 -14.26994 -14.05770 -13.51477 -13.33620 -13.14629 -12.98169 -12.66457 -12.39597 -12.24041 -12.08833 -11.55159 -11.16379 -10.90640 -10.81619 -10.67620 -10.52931 -9.99359 -9.93082 -9.48910 -9.34646 -9.17998 -9.01028 -8.58083 -8.39022 -8.32085 -7.85691 -5.96991 -3.99368 1.00659 1.23841 1.65301 1.77878 3.34223 3.40136 3.43178 3.74597 4.04110 4.33136 4.40349 4.53533 4.76204 4.87228 4.99847 5.10473 5.14295 5.22533 5.27399 5.39108 5.42920 5.50689 5.55949 5.66160 5.81607 5.96249 6.03851 6.07017 6.23994 6.33648 6.39596 6.43974 6.61938 6.72013 6.86863 6.98690 7.03761 7.34101 7.47345 7.74008 7.82154 7.95386 8.04643 8.10887 8.46044 9.07743 9.64210 11.14445 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.004479 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.333962 B = 6250.321639 C = 7455.555827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.067 3.933 11 N -0.669 5.669 12 C 0.175 3.825 13 H 0.061 0.939 14 C -0.066 4.066 15 C -0.055 4.055 16 C -0.133 4.133 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.120 4.120 20 C 0.137 3.863 21 C -0.168 4.168 22 C -0.077 4.077 23 C -0.180 4.180 24 C 0.099 3.901 25 N -0.452 5.452 26 H 0.260 0.740 27 H 0.026 0.974 28 H 0.013 0.987 29 H 0.016 0.984 30 H 0.061 0.939 31 H 0.339 0.661 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 -20.562 0.613 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.061 4.061 11 N -0.301 5.301 12 C 0.065 3.935 13 H 0.079 0.921 14 C -0.067 4.067 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.143 4.143 18 C -0.151 4.151 19 C -0.138 4.138 20 C -0.002 4.002 21 C -0.188 4.188 22 C -0.103 4.103 23 C -0.200 4.200 24 C -0.058 4.058 25 N -0.160 5.160 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.134 -20.056 -0.840 20.495 hybrid contribution 1.087 0.571 1.771 2.155 sum 5.221 -19.486 0.931 20.195 Atomic orbital electron populations 1.69974 1.06020 1.26537 1.50701 1.24986 0.94818 0.99156 0.95328 0.86602 0.79791 0.83520 0.78132 1.20622 1.21250 1.19941 1.21162 0.92959 0.90975 1.50805 0.92789 1.19047 0.93956 0.90275 0.97740 1.22247 0.97036 0.88039 0.98778 1.60606 1.18718 1.00962 1.49770 1.19308 0.93811 0.87874 0.92542 0.92147 1.19604 0.93110 0.99338 0.94655 1.21083 1.00522 0.94572 0.91164 1.21202 0.96095 1.00754 0.97022 1.21067 0.93808 1.00754 0.98647 1.20934 0.99079 1.02107 0.92975 1.20970 0.95567 1.00598 0.96700 1.21214 0.92133 0.95614 0.91202 1.22007 1.01824 0.97866 0.97138 1.21522 0.94647 0.94901 0.99194 1.22139 0.98530 1.01864 0.97435 1.22831 0.98115 0.91631 0.93248 1.67519 1.06622 1.09088 1.32812 0.93025 0.95539 0.96884 0.96577 0.92057 0.84221 0.84593 0.86481 0.86820 0.86744 0.86857 0.84956 0.85008 0.85059 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.72 5.23 -27.88 -0.15 0.57 16 10 C 0.07 1.42 5.42 -3.83 -0.02 1.40 16 11 N -0.67 -12.24 5.55 -109.19 -0.61 -12.85 16 12 C 0.18 2.72 2.54 -70.02 -0.18 2.54 16 13 H 0.06 0.89 7.39 -51.92 -0.38 0.51 16 14 C -0.07 -1.04 4.62 -104.62 -0.48 -1.53 16 15 C -0.06 -0.90 8.78 -39.58 -0.35 -1.25 16 16 C -0.13 -1.93 10.05 -39.58 -0.40 -2.32 16 17 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 18 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 19 C -0.12 -1.71 9.67 -39.58 -0.38 -2.09 16 20 C 0.14 1.92 5.40 -82.58 -0.45 1.48 16 21 C -0.17 -1.94 9.71 -39.44 -0.38 -2.33 16 22 C -0.08 -0.74 10.18 -39.28 -0.40 -1.14 16 23 C -0.18 -1.70 10.11 -39.44 -0.40 -2.10 16 24 C 0.10 1.13 11.18 -17.55 -0.20 0.94 16 25 N -0.45 -6.50 9.55 -9.47 -0.09 -6.60 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 30 H 0.06 1.35 8.00 -51.93 -0.42 0.94 16 31 H 0.34 6.18 8.35 -39.29 -0.33 5.85 16 32 H 0.14 2.40 7.73 -52.49 -0.41 2.00 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.11 1.39 8.04 -52.49 -0.42 0.97 16 37 H 0.13 1.30 7.95 -52.49 -0.42 0.88 16 38 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -32.08 342.99 -10.51 -42.59 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.71 Total: 4.91 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -4.99 Total: -23.66 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.04 Total: -45.90 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.08 -10.51 -42.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096981639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.850 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds