Wall clock time and date at job start Tue Mar 31 2020 06:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30829 * 125.90154 * 2 1 4 4 N 1.40087 * 108.20855 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.04092 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46906 * 89.97524 * 5 4 3 7 7 C 1.46898 * 110.99876 * 66.04639 * 6 5 4 8 8 C 1.46903 * 110.99906 * 190.00287 * 6 5 4 9 9 H 1.08999 * 109.47104 * 299.99992 * 8 6 5 10 10 C 1.52997 * 109.47036 * 59.99818 * 8 6 5 11 11 C 1.50697 * 109.46879 * 180.02562 * 8 6 5 12 12 H 1.07997 * 120.00061 * 359.97438 * 11 8 6 13 13 C 1.37879 * 119.99615 * 179.97438 * 11 8 6 14 14 N 1.31517 * 119.99613 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 120.00247 * 0.02562 * 13 11 8 16 16 H 1.48498 * 109.47408 * 89.99854 * 15 13 11 17 17 H 1.48502 * 109.47086 * 209.99936 * 15 13 11 18 18 H 1.48504 * 109.46873 * 329.99657 * 15 13 11 19 19 C 1.34946 * 107.92254 * 0.02562 * 4 3 2 20 20 C 1.50700 * 126.12518 * 179.97438 * 19 4 3 21 21 C 1.35316 * 107.74870 * 359.97438 * 19 4 3 22 22 N 1.48020 * 126.04187 * 180.26047 * 21 19 4 23 23 O 1.21792 * 120.00179 * 269.71908 * 22 21 19 24 24 O 1.21805 * 119.99328 * 89.71719 * 22 21 19 25 25 H 1.09003 * 109.46946 * 269.97231 * 1 2 3 26 26 H 1.09003 * 109.47429 * 29.97031 * 1 2 3 27 27 H 1.09000 * 109.47862 * 149.97364 * 1 2 3 28 28 H 1.09000 * 109.47328 * 209.97723 * 5 4 3 29 29 H 1.09000 * 109.46905 * 329.97773 * 5 4 3 30 30 H 1.09005 * 109.46919 * 60.00102 * 7 6 5 31 31 H 1.09003 * 109.47182 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47457 * 300.00272 * 7 6 5 33 33 H 1.08993 * 109.47661 * 300.00028 * 10 8 6 34 34 H 1.09004 * 109.46712 * 60.00469 * 10 8 6 35 35 H 1.09002 * 109.46983 * 179.97438 * 10 8 6 36 36 H 0.97006 * 119.99510 * 180.02562 * 14 13 11 37 37 H 1.08998 * 109.47019 * 270.02000 * 20 19 4 38 38 H 1.09002 * 109.47497 * 30.02370 * 20 19 4 39 39 H 1.08999 * 109.46980 * 150.02717 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6340 -0.0006 5 6 4.7899 1.5006 -0.0013 6 7 5.1851 1.7909 1.3835 7 6 5.6448 0.5740 2.0659 8 6 6.2123 2.8401 1.4288 9 1 7.0922 2.5112 0.8760 10 6 5.6621 4.1202 0.7970 11 6 6.5920 3.1096 2.8621 12 1 6.1173 2.5572 3.6595 13 6 7.5453 4.0616 3.1553 14 7 7.8770 4.2965 4.4061 15 14 8.3658 5.0176 1.7761 16 1 7.5831 6.2473 1.4924 17 1 9.7439 5.3911 2.1844 18 1 8.4227 4.1743 0.5551 19 6 3.6142 -0.7155 -0.0015 20 6 4.8350 -1.5990 -0.0030 21 6 2.3271 -1.1331 -0.0009 22 7 1.8681 -2.5403 0.0038 23 8 1.6751 -3.1216 -1.0489 24 8 1.6835 -3.1170 1.0607 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3635 -0.8897 -0.5142 28 1 5.6092 0.9977 -0.5151 29 1 4.5563 2.4328 -0.5155 30 1 6.5042 0.1630 1.5360 31 1 5.9316 0.8175 3.0889 32 1 4.8403 -0.1613 2.0788 33 1 5.3878 3.9250 -0.2397 34 1 4.7822 4.4492 1.3499 35 1 6.4242 4.8988 0.8311 36 1 8.5475 4.9665 4.6124 37 1 5.1288 -1.8110 -1.0309 38 1 5.6514 -1.0917 0.5110 39 1 4.6077 -2.5335 0.5100 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103460990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:10 Heat of formation + Delta-G solvation = 96.862994 kcal Electronic energy + Delta-G solvation = -22863.991505 eV Core-core repulsion = 19426.984247 eV Total energy + Delta-G solvation = -3437.007258 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.48432 -41.37829 -37.78065 -36.44094 -34.33207 -32.90892 -32.41409 -30.52837 -29.17760 -28.82981 -26.59770 -25.48949 -24.73250 -23.35946 -21.12859 -20.45096 -19.77214 -18.76855 -18.61197 -17.37472 -17.00329 -16.35667 -16.05968 -15.39602 -14.47024 -14.33959 -14.26320 -13.73592 -13.66299 -13.24134 -13.16546 -12.90555 -12.69046 -12.60778 -12.46621 -12.13402 -11.71465 -11.63905 -11.31857 -11.17096 -11.11538 -10.91296 -10.88761 -10.85660 -10.36862 -9.81766 -9.57998 -9.41494 -9.27725 -8.77762 -7.92018 -6.27378 -4.29240 0.56029 1.16594 1.31506 1.95659 2.23628 3.10277 3.16768 3.23004 3.90893 4.03710 4.18997 4.31951 4.35559 4.72027 4.85706 4.99678 5.03229 5.10748 5.15971 5.27187 5.32807 5.43983 5.54127 5.58749 5.79555 5.84951 6.02229 6.10690 6.18689 6.30610 6.42203 6.48465 6.56585 6.90671 7.14802 7.21600 7.48648 7.60394 7.65830 8.35131 8.76890 9.31200 10.84772 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031069 B = 0.004207 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.014456 B = 6653.893384 C = 6899.455609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.118 3.882 3 N -0.248 5.248 4 N -0.327 5.327 5 C 0.283 3.717 6 N -0.535 5.535 7 C 0.024 3.976 8 C 0.191 3.809 9 H 0.006 0.994 10 C -0.152 4.152 11 C -0.515 4.515 12 H 0.085 0.915 13 C 0.075 3.925 14 N -0.891 5.891 15 Si 0.886 3.114 16 H -0.276 1.276 17 H -0.294 1.294 18 H -0.270 1.270 19 C 0.164 3.836 20 C -0.123 4.123 21 C -0.195 4.195 22 N 0.056 4.944 23 O -0.147 6.147 24 O -0.142 6.142 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.022 0.978 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.267 0.733 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -9.117 -11.217 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 N -0.069 5.069 4 N -0.107 5.107 5 C 0.073 3.927 6 N -0.261 5.261 7 C -0.124 4.124 8 C 0.084 3.916 9 H 0.024 0.976 10 C -0.209 4.209 11 C -0.553 4.553 12 H 0.103 0.897 13 C -0.128 4.128 14 N -0.528 5.528 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.221 1.221 18 H -0.195 1.195 19 C 0.030 3.970 20 C -0.181 4.181 21 C -0.289 4.289 22 N 0.586 4.414 23 O -0.369 6.369 24 O -0.365 6.365 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.138 0.862 30 H 0.041 0.959 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.590 -6.655 -10.836 14.810 hybrid contribution 1.090 -0.791 -0.974 1.662 sum -6.500 -7.445 -11.810 15.400 Atomic orbital electron populations 1.20360 0.85290 1.04212 1.04237 1.22116 0.97605 0.87113 0.98270 1.77679 0.85943 1.20190 1.23090 1.48836 1.06382 1.02819 1.52653 1.22567 0.81703 0.94130 0.94276 1.61842 1.43745 1.09843 1.10643 1.22582 0.96770 0.90681 1.02343 1.19719 0.86706 0.86457 0.98699 0.97647 1.22302 1.01812 0.99156 0.97678 1.20844 1.22192 1.22396 0.89828 0.89689 1.24900 0.96105 0.96422 0.95392 1.69862 1.32034 1.33426 1.17481 0.86893 0.78254 0.80805 0.82449 1.20273 1.22144 1.19486 1.20534 0.94725 0.86239 0.95508 1.21053 0.93582 0.98513 1.04954 1.20328 0.93906 0.82200 1.32478 1.42566 0.97463 1.01470 0.99940 1.94522 1.53861 1.67177 1.21378 1.94554 1.53829 1.67421 1.20717 0.89183 0.89210 0.90509 0.91240 0.86153 0.95931 0.88391 0.93407 0.95275 0.91441 0.93313 0.92268 0.88594 0.88081 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.44 36.00 0.38 -0.50 16 2 C 0.12 1.69 7.22 -82.41 -0.59 1.09 16 3 N -0.25 -3.96 12.58 33.67 0.42 -3.54 16 4 N -0.33 -4.95 3.57 -60.13 -0.21 -5.17 16 5 C 0.28 4.26 5.73 -63.31 -0.36 3.89 16 6 N -0.53 -9.95 4.76 -240.19 -1.14 -11.09 16 7 C 0.02 0.41 7.72 60.06 0.46 0.88 16 8 C 0.19 4.03 1.65 -68.87 -0.11 3.92 16 9 H 0.01 0.13 7.20 -51.93 -0.37 -0.25 16 10 C -0.15 -3.01 8.47 37.16 0.31 -2.69 16 11 C -0.51 -13.27 8.46 -34.44 -0.29 -13.56 16 12 H 0.09 2.42 6.65 -52.49 -0.35 2.07 16 13 C 0.08 2.01 5.45 -17.82 -0.10 1.91 16 14 N -0.89 -25.70 13.96 55.43 0.77 -24.93 16 15 Si 0.89 20.25 24.37 -169.99 -4.14 16.11 16 16 H -0.28 -6.19 6.87 56.52 0.39 -5.80 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -5.79 6.53 56.52 0.37 -5.42 16 19 C 0.16 2.28 5.70 -82.26 -0.47 1.81 16 20 C -0.12 -1.31 9.29 36.01 0.33 -0.98 16 21 C -0.19 -2.86 6.60 -80.37 -0.53 -3.39 16 22 N 0.06 0.81 4.41 33.75 0.15 0.96 16 23 O -0.15 -2.17 19.25 -29.46 -0.57 -2.74 16 24 O -0.14 -2.18 19.26 -29.46 -0.57 -2.75 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.88 7.63 -51.93 -0.40 0.48 16 29 H 0.12 1.77 5.83 -51.93 -0.30 1.46 16 30 H 0.02 0.34 6.97 -51.93 -0.36 -0.02 16 31 H 0.10 1.95 6.10 -51.93 -0.32 1.63 16 32 H 0.05 0.76 5.77 -51.93 -0.30 0.46 16 33 H 0.03 0.47 6.20 -51.93 -0.32 0.15 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.05 1.01 3.27 -51.93 -0.17 0.84 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.06 4.51 -51.93 -0.23 0.83 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 316.68 15.07 4.77 4.77 Total: -1.00 -29.66 316.68 -6.33 -36.00 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.84 Total: -0.02 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.97 Total: -7.61 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.01 Total: -43.76 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -1.13 Total: -5.49 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.14 Total: 16.11 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.66 -6.33 -36.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.859 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds