Wall clock time and date at job start Tue Mar 31 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30841 * 125.89627 * 2 1 4 4 N 1.40079 * 108.20314 * 180.12317 * 3 2 1 5 5 C 1.46505 * 126.03573 * 179.85682 * 4 3 2 6 6 N 1.46906 * 109.46810 * 269.69446 * 5 4 3 7 7 C 1.46903 * 111.00093 * 66.04665 * 6 5 4 8 8 C 1.46906 * 110.99440 * 189.99803 * 6 5 4 9 9 H 1.08996 * 109.46825 * 55.00566 * 8 6 5 10 10 C 1.52997 * 109.47302 * 294.99743 * 8 6 5 11 11 C 1.50708 * 109.46619 * 174.99918 * 8 6 5 12 12 H 1.07995 * 119.99755 * 0.02562 * 11 8 6 13 13 C 1.37873 * 119.99729 * 179.97438 * 11 8 6 14 14 N 1.31516 * 119.99909 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99980 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46921 * 60.00420 * 15 13 11 17 17 H 1.48496 * 109.46933 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46946 * 300.00103 * 15 13 11 19 19 C 1.34942 * 107.92746 * 359.59574 * 4 3 2 20 20 C 1.50703 * 126.12792 * 180.23599 * 19 4 3 21 21 C 1.35313 * 107.74578 * 0.23729 * 19 4 3 22 22 N 1.48022 * 126.04020 * 179.97438 * 21 19 4 23 23 O 1.21794 * 120.00182 * 90.00312 * 22 21 19 24 24 O 1.21808 * 119.99941 * 270.00081 * 22 21 19 25 25 H 1.09004 * 109.47416 * 270.32208 * 1 2 3 26 26 H 1.08998 * 109.47363 * 30.32725 * 1 2 3 27 27 H 1.09008 * 109.46952 * 150.32833 * 1 2 3 28 28 H 1.08996 * 109.47096 * 149.69295 * 5 4 3 29 29 H 1.08997 * 109.47108 * 29.68908 * 5 4 3 30 30 H 1.09004 * 109.46799 * 183.95154 * 7 6 5 31 31 H 1.08995 * 109.46967 * 303.95395 * 7 6 5 32 32 H 1.09002 * 109.46933 * 63.95401 * 7 6 5 33 33 H 1.09002 * 109.47153 * 180.02562 * 10 8 6 34 34 H 1.09001 * 109.46832 * 60.00356 * 10 8 6 35 35 H 1.09004 * 109.47261 * 300.00337 * 10 8 6 36 36 H 0.97002 * 119.99804 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.46930 * 89.99974 * 20 19 4 38 38 H 1.09000 * 109.47345 * 209.99480 * 20 19 4 39 39 H 1.08998 * 109.47098 * 330.00388 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 -0.0029 5 6 4.7898 1.5009 -0.0068 6 7 5.1855 1.7831 -1.3931 7 6 4.1627 2.5831 -2.0801 8 6 6.4945 2.4480 -1.4420 9 1 7.2292 1.8434 -0.9102 10 6 6.3924 3.8244 -0.7816 11 6 6.9222 2.6103 -2.8780 12 1 6.2850 2.2554 -3.6745 13 6 8.1262 3.2128 -3.1747 14 7 8.9018 3.6454 -2.2047 15 14 8.6567 3.4133 -4.9546 16 1 7.6555 4.2362 -5.6797 17 1 9.9798 4.0856 -5.0040 18 1 8.7567 2.0772 -5.5948 19 6 3.6142 -0.7152 0.0045 20 6 4.8351 -1.5987 0.0096 21 6 2.3272 -1.1329 0.0064 22 7 1.8683 -2.5402 0.0134 23 8 1.6794 -3.1139 1.0711 24 8 1.6797 -3.1245 -1.0386 25 1 -0.3634 0.0058 1.0277 26 1 -0.3634 0.8870 -0.5189 27 1 -0.3633 -0.8930 -0.5088 28 1 5.6089 1.0012 0.5103 29 1 4.5559 2.4362 0.5017 30 1 4.4473 2.7181 -3.1236 31 1 3.2035 2.0679 -2.0288 32 1 4.0784 3.5568 -1.5975 33 1 7.3636 4.3179 -0.8182 34 1 6.0831 3.7069 0.2570 35 1 5.6576 4.4290 -1.3134 36 1 9.7488 4.0696 -2.4135 37 1 5.1292 -1.8061 1.0385 38 1 4.6078 -2.5355 -0.4991 39 1 5.6513 -1.0935 -0.5067 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103460991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:14 Heat of formation + Delta-G solvation = 83.119678 kcal Electronic energy + Delta-G solvation = -22759.140887 eV Core-core repulsion = 19321.537674 eV Total energy + Delta-G solvation = -3437.603213 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.38334 -41.27913 -37.60530 -36.36890 -34.24409 -33.00070 -32.18932 -29.65282 -28.80341 -28.22526 -26.36794 -25.41753 -25.32989 -23.30917 -21.01491 -20.38086 -19.56196 -18.69874 -18.51543 -17.11737 -16.53236 -16.26564 -15.73994 -15.00024 -14.51291 -14.29786 -13.99516 -13.65025 -13.51506 -13.27333 -12.81046 -12.79601 -12.55528 -12.40732 -11.89121 -11.58803 -11.53804 -11.36155 -11.34731 -11.04788 -10.99582 -10.95511 -10.82311 -10.77634 -10.30588 -10.18119 -9.52637 -9.30300 -9.15515 -8.59826 -7.68833 -6.22310 -4.27628 0.63402 1.28388 1.41766 1.99082 2.33711 3.21161 3.26117 3.29040 4.05247 4.14034 4.24009 4.47105 4.68558 4.83933 5.05041 5.10808 5.21763 5.25134 5.26379 5.30279 5.41631 5.62139 5.73635 5.87844 5.93899 6.12965 6.36462 6.38371 6.48180 6.56878 6.67397 6.74443 7.04356 7.24633 7.41344 7.52703 7.72425 7.73154 8.03317 8.21207 8.76493 9.38648 10.84612 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.004122 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.190484 B = 6790.500316 C = 7038.852110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.120 3.880 3 N -0.266 5.266 4 N -0.328 5.328 5 C 0.288 3.712 6 N -0.546 5.546 7 C 0.033 3.967 8 C 0.218 3.782 9 H 0.044 0.956 10 C -0.177 4.177 11 C -0.507 4.507 12 H 0.064 0.936 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.901 3.099 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.181 3.819 20 C -0.113 4.113 21 C -0.202 4.202 22 N 0.057 4.943 23 O -0.147 6.147 24 O -0.145 6.145 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.026 0.974 33 H 0.095 0.905 34 H 0.007 0.993 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 -6.099 6.162 13.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 N -0.088 5.088 4 N -0.108 5.108 5 C 0.078 3.922 6 N -0.271 5.271 7 C -0.115 4.115 8 C 0.113 3.887 9 H 0.062 0.938 10 C -0.236 4.236 11 C -0.545 4.545 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.047 3.953 20 C -0.171 4.171 21 C -0.296 4.296 22 N 0.587 4.413 23 O -0.370 6.370 24 O -0.368 6.368 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.113 0.887 34 H 0.026 0.974 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.604 -4.283 5.933 12.074 hybrid contribution 0.206 -0.184 -0.549 0.615 sum -9.397 -4.466 5.384 11.715 Atomic orbital electron populations 1.20350 0.85453 1.04328 1.03936 1.22043 0.97439 0.87217 0.98110 1.77586 0.86323 1.20534 1.24312 1.48946 1.06075 1.03268 1.52525 1.22468 0.82037 0.92812 0.94864 1.62400 1.05834 1.49037 1.09874 1.22283 0.93539 0.95058 1.00618 1.19352 0.82246 0.89316 0.97826 0.93781 1.22482 1.04038 1.01776 0.95302 1.20962 1.03978 1.38629 0.90921 0.91794 1.24902 0.96218 0.95160 0.97676 1.69848 1.11845 1.39924 1.31466 0.86511 0.77741 0.78473 0.84455 1.20241 1.21219 1.20092 1.20562 0.94615 0.86167 0.94004 1.20798 0.93608 0.98136 1.04563 1.20312 0.94006 0.82076 1.33247 1.42564 0.97375 1.01515 0.99891 1.94518 1.53924 1.67811 1.20718 1.94548 1.53851 1.66911 1.21447 0.89431 0.89270 0.90454 0.87353 0.90581 0.90230 0.93418 0.95508 0.88690 0.97396 0.94526 0.92639 0.88736 0.89452 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.44 36.01 0.38 -0.50 16 2 C 0.12 1.74 7.22 -82.41 -0.59 1.15 16 3 N -0.27 -4.22 11.51 33.67 0.39 -3.83 16 4 N -0.33 -5.14 3.33 -60.13 -0.20 -5.34 16 5 C 0.29 4.59 5.20 -63.30 -0.33 4.26 16 6 N -0.55 -10.48 4.88 -240.18 -1.17 -11.65 16 7 C 0.03 0.63 8.79 60.07 0.53 1.16 16 8 C 0.22 4.84 2.34 -68.86 -0.16 4.68 16 9 H 0.04 1.05 8.03 -51.93 -0.42 0.63 16 10 C -0.18 -3.80 8.28 37.16 0.31 -3.50 16 11 C -0.51 -12.73 7.94 -34.44 -0.27 -13.00 16 12 H 0.06 1.64 6.75 -52.49 -0.35 1.28 16 13 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 14 N -0.89 -23.52 11.32 55.43 0.63 -22.90 16 15 Si 0.90 20.23 29.54 -169.99 -5.02 15.20 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 C 0.18 2.68 6.93 -82.27 -0.57 2.11 16 20 C -0.11 -1.35 9.86 36.01 0.36 -1.00 16 21 C -0.20 -3.07 6.60 -80.38 -0.53 -3.60 16 22 N 0.06 0.86 4.41 33.75 0.15 1.01 16 23 O -0.15 -2.25 19.25 -29.46 -0.57 -2.82 16 24 O -0.15 -2.31 19.26 -29.46 -0.57 -2.88 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.11 1.53 7.52 -51.93 -0.39 1.14 16 29 H 0.08 1.21 6.94 -51.93 -0.36 0.85 16 30 H 0.08 1.61 6.53 -51.93 -0.34 1.28 16 31 H 0.05 0.87 6.64 -51.93 -0.35 0.53 16 32 H 0.03 0.50 6.28 -51.93 -0.33 0.17 16 33 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 34 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 35 H 0.04 0.78 6.39 -51.93 -0.33 0.45 16 36 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.10 1.30 7.72 -51.93 -0.40 0.90 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -27.38 328.35 -7.58 -34.97 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.18 Total: 0.01 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.99 Total: -6.73 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.21 Total: -42.71 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -1.13 Total: -5.69 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.38 -7.58 -34.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.087 kcal (2) G-P(sol) polarization free energy of solvation -27.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds