Wall clock time and date at job start Tue Mar 31 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47373 * 270.00249 * 3 2 1 5 5 H 1.48501 * 109.46833 * 30.00375 * 3 2 1 6 6 H 1.48500 * 109.46917 * 150.00277 * 3 2 1 7 7 C 1.37878 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47094 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47366 * 304.99802 * 10 9 7 12 12 N 1.46908 * 109.47173 * 64.99676 * 10 9 7 13 13 C 1.46893 * 110.99946 * 205.00228 * 12 10 9 14 14 C 1.50702 * 109.47171 * 180.02562 * 13 12 10 15 15 C 1.38225 * 119.61833 * 94.99516 * 14 13 12 16 16 C 1.38635 * 119.15939 * 180.02562 * 15 14 13 17 17 C 1.38675 * 118.41956 * 0.02562 * 16 15 14 18 18 C 1.38186 * 119.16332 * 0.27967 * 17 16 15 19 19 N 1.31860 * 119.61626 * 275.02194 * 14 13 12 20 20 C 1.50700 * 109.47072 * 184.99488 * 10 9 7 21 21 C 1.38231 * 119.99886 * 279.72538 * 20 10 9 22 22 C 1.38236 * 119.99576 * 179.78946 * 21 20 10 23 23 C 1.38235 * 120.00198 * 0.43808 * 22 21 20 24 24 C 1.38237 * 119.99905 * 359.81935 * 23 22 21 25 25 C 1.38233 * 119.99747 * 100.00163 * 20 10 9 26 26 H 0.97003 * 119.99970 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47558 * 59.99740 * 9 7 2 28 28 H 1.08999 * 109.46611 * 299.99449 * 9 7 2 29 29 H 1.00890 * 110.99781 * 81.04329 * 12 10 9 30 30 H 1.09001 * 109.47499 * 60.00227 * 13 12 10 31 31 H 1.08999 * 109.46922 * 299.99706 * 13 12 10 32 32 H 1.07997 * 120.42054 * 0.04702 * 15 14 13 33 33 H 1.07998 * 120.78847 * 180.02562 * 16 15 14 34 34 H 1.08002 * 120.41399 * 179.97438 * 17 16 15 35 35 H 1.07999 * 119.61418 * 179.70216 * 18 17 16 36 36 H 1.08000 * 120.00710 * 0.02562 * 21 20 10 37 37 H 1.08004 * 119.99904 * 180.27835 * 22 21 20 38 38 H 1.07996 * 120.00192 * 179.83078 * 23 22 21 39 39 H 1.07996 * 120.00239 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.00040 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 1 2.9293 -3.5546 -0.8444 12 7 3.0084 -3.6550 1.2525 13 6 4.3095 -4.3150 1.0813 14 6 5.0617 -4.2889 2.3868 15 6 4.9909 -5.3758 3.2379 16 6 5.6863 -5.3414 4.4368 17 6 6.4298 -4.2098 4.7363 18 6 6.4480 -3.1591 3.8389 19 7 5.7795 -3.2293 2.7043 20 6 1.4958 -4.9636 -0.1276 21 6 0.8991 -5.5270 0.9847 22 6 0.2079 -6.7186 0.8693 23 6 0.1213 -7.3514 -0.3567 24 6 0.7225 -6.7906 -1.4680 25 6 1.4100 -5.5968 -1.3534 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5564 -0.8919 28 1 0.6241 -2.5575 0.8881 29 1 2.4812 -4.0831 1.9986 30 1 4.8856 -3.7904 0.3191 31 1 4.1546 -5.3488 0.7723 32 1 4.4016 -6.2409 2.9722 33 1 5.6498 -6.1760 5.1212 34 1 6.9836 -4.1484 5.6615 35 1 7.0207 -2.2723 4.0670 36 1 0.9695 -5.0344 1.9432 37 1 -0.2621 -7.1565 1.7374 38 1 -0.4164 -8.2837 -0.4464 39 1 0.6552 -7.2852 -2.4257 40 1 1.8797 -5.1587 -2.2216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130583090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:08 Heat of formation + Delta-G solvation = 60.162142 kcal Electronic energy + Delta-G solvation = -21142.573248 eV Core-core repulsion = 18114.823784 eV Total energy + Delta-G solvation = -3027.749464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08250 -39.17593 -36.11504 -33.15437 -32.35047 -31.95832 -30.66360 -29.96587 -28.62711 -25.63050 -24.04518 -23.41141 -22.40358 -21.85581 -21.40916 -19.66258 -17.16077 -16.65943 -16.14627 -16.00459 -15.43247 -15.11213 -14.82709 -14.40977 -14.20378 -13.90588 -13.37418 -13.21676 -13.18695 -12.98673 -12.63515 -12.37288 -12.03802 -11.96749 -11.56054 -11.16582 -10.97098 -10.78115 -10.62748 -10.44969 -10.13178 -9.80383 -9.59318 -9.21893 -9.01594 -8.90575 -8.63922 -8.23777 -8.19898 -7.69584 -5.82947 -3.80569 1.17086 1.37060 1.68160 1.69258 3.44388 3.50200 3.57910 3.86566 4.10303 4.43039 4.62780 4.73033 4.87461 5.04155 5.09231 5.15524 5.17787 5.20763 5.28114 5.43473 5.54659 5.59950 5.66457 5.77592 5.83715 5.85335 6.00927 6.09317 6.19546 6.25553 6.29873 6.38303 6.74584 6.75477 6.76499 6.81961 6.97706 7.31101 7.49718 7.68051 7.96583 8.03111 8.17874 8.21597 8.61224 9.25021 9.80838 11.28944 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.008507 B = 0.007241 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.680575 B = 3865.718463 C = 6677.790172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.051 3.949 3 Si 0.889 3.111 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.487 4.487 8 H 0.062 0.938 9 C 0.043 3.957 10 C 0.130 3.870 11 H 0.077 0.923 12 N -0.648 5.648 13 C 0.106 3.894 14 C 0.145 3.855 15 C -0.172 4.172 16 C -0.078 4.078 17 C -0.184 4.184 18 C 0.101 3.899 19 N -0.459 5.459 20 C -0.091 4.091 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.137 4.137 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.257 0.743 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.332 0.668 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 -15.570 5.456 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.148 4.148 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.080 0.920 9 C 0.006 3.994 10 C 0.021 3.979 11 H 0.096 0.904 12 N -0.278 5.278 13 C -0.024 4.024 14 C 0.007 3.993 15 C -0.193 4.193 16 C -0.104 4.104 17 C -0.204 4.204 18 C -0.057 4.057 19 N -0.168 5.168 20 C -0.093 4.093 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.155 4.155 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.151 0.849 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.109 -14.092 4.777 16.946 hybrid contribution -0.023 -0.712 0.714 1.009 sum 8.086 -14.804 5.491 17.740 Atomic orbital electron populations 1.69972 1.05985 1.26198 1.52364 1.24983 0.94747 0.99052 0.96066 0.86629 0.80083 0.83746 0.77784 1.21049 1.21634 1.19732 1.21135 0.93336 0.90004 1.48106 0.92007 1.19089 0.92670 0.90419 0.97252 1.21020 0.94907 0.90950 0.91070 0.90442 1.60618 1.02747 1.57318 1.07158 1.20866 0.91724 0.97117 0.92695 1.21306 0.93323 0.88657 0.96055 1.22002 1.01488 1.00265 0.95501 1.21505 0.94861 0.97885 0.96163 1.22106 1.01668 0.95305 1.01298 1.22822 0.95594 0.97832 0.89447 1.67585 1.05913 1.25040 1.18223 1.21198 0.97672 0.97164 0.93289 1.20965 0.98361 0.95753 0.98772 1.21050 0.99401 0.95845 0.97417 1.21010 1.01113 1.00175 0.93218 1.21087 0.98311 0.96257 0.98231 1.21094 0.99828 0.95180 0.97374 0.93381 0.96207 0.96328 0.84875 0.89340 0.94486 0.85202 0.85227 0.85189 0.82966 0.86270 0.86640 0.86804 0.86635 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 22.64 29.54 -169.99 -5.02 17.62 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.27 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.49 -13.88 8.84 -34.44 -0.30 -14.18 16 8 H 0.06 1.77 7.74 -52.49 -0.41 1.37 16 9 C 0.04 1.10 4.63 -27.88 -0.13 0.97 16 10 C 0.13 2.60 2.17 -68.86 -0.15 2.45 16 11 H 0.08 1.56 7.66 -51.93 -0.40 1.17 16 12 N -0.65 -12.25 5.94 -109.22 -0.65 -12.90 16 13 C 0.11 1.71 5.79 -4.98 -0.03 1.68 16 14 C 0.14 2.25 6.29 -82.58 -0.52 1.73 16 15 C -0.17 -2.16 9.72 -39.44 -0.38 -2.54 16 16 C -0.08 -0.84 10.18 -39.27 -0.40 -1.24 16 17 C -0.18 -2.00 10.11 -39.44 -0.40 -2.40 16 18 C 0.10 1.34 11.18 -17.55 -0.20 1.15 16 19 N -0.46 -7.72 10.27 -9.47 -0.10 -7.81 16 20 C -0.09 -1.59 4.71 -104.63 -0.49 -2.08 16 21 C -0.12 -1.92 9.12 -39.58 -0.36 -2.28 16 22 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 23 C -0.14 -1.80 10.05 -39.58 -0.40 -2.20 16 24 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 25 C -0.12 -1.84 9.67 -39.58 -0.38 -2.22 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.33 5.91 6.33 -39.30 -0.25 5.66 16 30 H 0.09 1.52 8.06 -51.93 -0.42 1.11 16 31 H 0.04 0.53 7.90 -51.93 -0.41 0.12 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.12 1.86 6.50 -52.49 -0.34 1.52 16 37 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 38 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.78 8.04 -52.48 -0.42 1.36 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -32.92 341.59 -10.50 -43.42 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.58 Total: 5.41 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -5.04 Total: -23.87 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.01 Total: -47.73 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.92 -10.50 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130583090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.586 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds