Wall clock time and date at job start Tue Mar 31 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99735 * 2 1 4 4 H 1.48497 * 109.47416 * 240.00170 * 3 2 1 5 5 H 1.48494 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47195 * 120.00258 * 3 2 1 7 7 C 1.37873 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00474 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99511 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47075 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47426 * 54.99608 * 10 9 7 12 12 N 1.46904 * 109.46805 * 294.99700 * 10 9 7 13 13 C 1.46904 * 110.99788 * 154.99694 * 12 10 9 14 14 C 1.50697 * 109.47180 * 179.97438 * 13 12 10 15 15 C 1.38675 * 120.41610 * 90.00401 * 14 13 12 16 16 C 1.38631 * 118.41910 * 180.27639 * 15 14 13 17 17 C 1.38220 * 119.16036 * 359.51942 * 16 15 14 18 18 N 1.31852 * 120.76642 * 0.49346 * 17 16 15 19 19 C 1.31883 * 121.72537 * 359.73484 * 18 17 16 20 20 C 1.50697 * 109.47319 * 175.00053 * 10 9 7 21 21 C 1.38241 * 120.00016 * 79.72323 * 20 10 9 22 22 C 1.38235 * 119.99761 * 179.78700 * 21 20 10 23 23 C 1.38239 * 119.99936 * 0.44574 * 22 21 20 24 24 C 1.38237 * 120.00013 * 359.80833 * 23 22 21 25 25 C 1.38229 * 119.99925 * 359.97438 * 24 23 22 26 26 H 0.97004 * 119.99930 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47633 * 60.00149 * 9 7 2 28 28 H 1.09002 * 109.47630 * 299.99602 * 9 7 2 29 29 H 1.00898 * 111.00070 * 31.04930 * 12 10 9 30 30 H 1.09000 * 109.46564 * 60.00120 * 13 12 10 31 31 H 1.08999 * 109.47242 * 300.00554 * 13 12 10 32 32 H 1.08002 * 120.78673 * 359.97438 * 15 14 13 33 33 H 1.07999 * 120.41498 * 179.74544 * 16 15 14 34 34 H 1.07999 * 119.61761 * 180.22604 * 17 16 15 35 35 H 1.08006 * 119.61986 * 180.02562 * 19 18 17 36 36 H 1.07998 * 120.00113 * 0.02562 * 21 20 10 37 37 H 1.07993 * 120.00072 * 180.27250 * 22 21 20 38 38 H 1.08000 * 119.99729 * 179.83370 * 23 22 21 39 39 H 1.08002 * 119.99823 * 180.02562 * 24 23 22 40 40 H 1.08007 * 119.99877 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9295 -3.5552 0.8412 12 7 3.0084 -3.6538 -1.2558 13 6 4.3096 -4.3140 -1.0853 14 6 5.0617 -4.2867 -2.3908 15 6 5.9033 -3.2272 -2.6943 16 6 6.5705 -3.2416 -3.9094 17 6 6.3837 -4.3088 -4.7677 18 7 5.5754 -5.2996 -4.4460 19 6 4.9211 -5.3169 -3.3010 20 6 1.4960 -4.9636 0.1233 21 6 0.8895 -5.5204 -0.9872 22 6 0.2059 -6.7165 -0.8745 23 6 0.1209 -7.3513 0.3506 24 6 0.7230 -6.7919 1.4621 25 6 1.4104 -5.5980 1.3485 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 3.1228 -2.7135 -1.6033 30 1 4.1547 -5.3480 -0.7771 31 1 4.8857 -3.7900 -0.3226 32 1 6.0321 -2.4079 -2.0025 33 1 7.2306 -2.4309 -4.1804 34 1 6.9026 -4.3294 -5.7146 35 1 4.2678 -6.1460 -3.0720 36 1 0.9531 -5.0227 -1.9436 37 1 -0.2642 -7.1537 -1.7429 38 1 -0.4155 -8.2845 0.4391 39 1 0.6569 -7.2880 2.4191 40 1 1.8804 -5.1607 2.2170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130604191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:19 Heat of formation + Delta-G solvation = 49.970961 kcal Electronic energy + Delta-G solvation = -21135.351265 eV Core-core repulsion = 18107.159878 eV Total energy + Delta-G solvation = -3028.191386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.05415 -38.93153 -36.24857 -33.51208 -32.39038 -31.75579 -30.44208 -30.01707 -28.60943 -25.48875 -24.09797 -23.43212 -22.19729 -21.87508 -21.39077 -19.59509 -17.01404 -16.67984 -16.27690 -16.09967 -15.41980 -14.99858 -14.77838 -14.53344 -14.18399 -13.78359 -13.38041 -13.30134 -12.96049 -12.85186 -12.76586 -12.33563 -12.21525 -12.07110 -11.40910 -11.20655 -11.05238 -10.77550 -10.63683 -10.53269 -10.36345 -9.73745 -9.64586 -9.39823 -9.22394 -8.91339 -8.48878 -8.42504 -8.08591 -7.85043 -6.10032 -4.14828 1.20075 1.37588 1.85234 1.90530 3.24789 3.31020 3.31373 3.88804 4.27889 4.37152 4.52306 4.82550 4.89961 5.04103 5.11827 5.15402 5.27874 5.33042 5.39463 5.46907 5.49713 5.64483 5.75345 5.90693 5.95573 6.01540 6.06689 6.18881 6.24518 6.40222 6.43628 6.53454 6.68214 6.79545 6.90619 6.97344 7.16225 7.38994 7.50865 7.54019 7.86461 7.90821 8.05528 8.10023 8.24614 8.90331 9.49746 11.00362 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.007191 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.212809 B = 3892.935848 C = 6696.807425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.029 3.971 10 C 0.127 3.873 11 H 0.042 0.958 12 N -0.674 5.674 13 C 0.100 3.900 14 C -0.120 4.120 15 C -0.070 4.070 16 C -0.174 4.174 17 C 0.088 3.912 18 N -0.489 5.489 19 C 0.116 3.884 20 C -0.055 4.055 21 C -0.088 4.088 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.124 4.124 26 H 0.263 0.737 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.359 0.641 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 -10.484 -3.003 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.070 0.930 9 C -0.008 4.008 10 C 0.018 3.982 11 H 0.060 0.940 12 N -0.307 5.307 13 C -0.030 4.030 14 C -0.122 4.122 15 C -0.097 4.097 16 C -0.194 4.194 17 C -0.069 4.069 18 N -0.198 5.198 19 C -0.041 4.041 20 C -0.055 4.055 21 C -0.106 4.106 22 C -0.148 4.148 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.142 4.142 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.181 0.819 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.901 -11.594 -3.837 14.545 hybrid contribution 0.965 2.439 1.178 2.876 sum 8.865 -9.155 -2.659 13.018 Atomic orbital electron populations 1.69949 1.06038 1.26902 1.49648 1.24967 0.94783 0.99121 0.95006 0.86697 0.79659 0.83325 0.78551 1.20193 1.21200 1.20321 1.21061 0.92571 0.90976 1.52051 0.93008 1.19249 0.93599 0.89644 0.98306 1.20666 0.95131 0.92735 0.89650 0.93994 1.60515 1.14873 1.25746 1.29614 1.20835 0.90085 1.00552 0.91486 1.20929 0.97451 0.95525 0.98345 1.21588 0.94206 0.97378 0.96522 1.22089 1.01729 1.00171 0.95391 1.22682 0.95275 0.89859 0.99115 1.67687 1.07040 1.26589 1.18460 1.22647 0.95500 0.97508 0.88454 1.20186 0.96878 0.95677 0.92795 1.21055 0.95651 0.94597 0.99281 1.21132 1.00123 0.96319 0.97209 1.20982 1.01150 1.00053 0.93330 1.20971 0.99106 0.96375 0.98124 1.21037 1.00380 0.95440 0.97354 0.92755 0.95297 0.95767 0.81893 0.90564 0.94542 0.84959 0.85100 0.83221 0.82838 0.85397 0.86860 0.87097 0.86952 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -13.80 8.12 -34.44 -0.28 -14.08 16 8 H 0.05 1.29 7.49 -52.49 -0.39 0.90 16 9 C 0.03 0.71 4.55 -27.88 -0.13 0.59 16 10 C 0.13 2.48 2.19 -68.86 -0.15 2.33 16 11 H 0.04 0.83 7.66 -51.93 -0.40 0.43 16 12 N -0.67 -11.90 5.55 -109.22 -0.61 -12.51 16 13 C 0.10 1.48 5.63 -4.98 -0.03 1.46 16 14 C -0.12 -1.68 5.41 -104.48 -0.57 -2.25 16 15 C -0.07 -0.92 9.86 -39.28 -0.39 -1.30 16 16 C -0.17 -2.01 10.11 -39.44 -0.40 -2.41 16 17 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16 18 N -0.49 -7.01 10.36 -13.25 -0.14 -7.15 16 19 C 0.12 1.64 10.86 -17.55 -0.19 1.45 16 20 C -0.05 -0.98 4.71 -104.62 -0.49 -1.47 16 21 C -0.09 -1.50 9.32 -39.58 -0.37 -1.87 16 22 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.14 -1.93 10.05 -39.58 -0.40 -2.33 16 24 C -0.13 -1.85 10.05 -39.59 -0.40 -2.25 16 25 C -0.12 -2.03 9.67 -39.59 -0.38 -2.41 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.36 7.00 7.20 -39.29 -0.28 6.71 16 30 H 0.08 1.10 7.95 -51.93 -0.41 0.68 16 31 H 0.04 0.54 8.01 -51.93 -0.42 0.12 16 32 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 36 H 0.13 2.26 7.73 -52.49 -0.41 1.86 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.11 1.77 8.04 -52.48 -0.42 1.34 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -29.17 342.34 -10.40 -39.57 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.67 Total: 8.59 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -4.86 Total: -24.38 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.01 Total: -44.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.17 -10.40 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130604191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.536 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds