Wall clock time and date at job start Tue Mar 31 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.47124 * 2 1 4 4 C 1.52996 * 109.47625 * 239.99471 * 2 1 3 5 5 N 1.46507 * 109.46719 * 60.00130 * 4 2 1 6 6 C 1.34774 * 119.99628 * 180.02562 * 5 4 2 7 7 O 1.21581 * 120.00196 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99692 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99787 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46913 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.46740 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00357 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99375 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99577 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00397 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47126 * 89.99602 * 15 13 11 17 17 H 1.48495 * 109.47445 * 209.99891 * 15 13 11 18 18 H 1.48500 * 109.47194 * 329.99976 * 15 13 11 19 19 C 1.50708 * 109.46859 * 119.99237 * 2 1 3 20 20 C 1.34506 * 125.79179 * 270.02027 * 19 2 1 21 21 C 1.41388 * 106.83998 * 179.97438 * 20 19 2 22 22 C 1.34515 * 106.83843 * 359.97438 * 21 20 19 23 23 O 1.34304 * 108.42331 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.47442 * 300.00475 * 1 2 3 25 25 H 1.09005 * 109.47037 * 60.00681 * 1 2 3 26 26 H 1.08999 * 109.47027 * 179.97438 * 1 2 3 27 27 H 0.96693 * 114.00094 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47407 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.47020 * 300.00667 * 4 2 1 30 30 H 0.97003 * 119.99938 * 359.97438 * 5 4 2 31 31 H 0.96998 * 120.00016 * 359.97438 * 8 6 5 32 32 H 1.09002 * 109.47113 * 299.99898 * 9 8 6 33 33 H 1.08994 * 109.47296 * 60.00033 * 9 8 6 34 34 H 1.09002 * 109.47004 * 299.99789 * 10 9 8 35 35 H 1.08994 * 109.47256 * 59.99833 * 10 9 8 36 36 H 0.97001 * 119.99420 * 180.02562 * 14 13 11 37 37 H 1.08000 * 126.58117 * 359.96027 * 20 19 2 38 38 H 1.08001 * 126.57691 * 180.26094 * 21 20 19 39 39 H 1.07998 * 125.78442 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5518 -0.0307 -2.4454 6 6 1.8771 -0.4916 -3.6694 7 8 2.5761 -1.4801 -3.7808 8 7 1.4283 0.1441 -4.7699 9 6 1.7823 -0.3565 -6.1005 10 6 1.1502 0.5396 -7.1673 11 6 1.5138 0.0243 -8.5360 12 1 2.1341 -0.8542 -8.6350 13 6 1.0546 0.6745 -9.6618 14 7 1.3724 0.2251 -10.8563 15 14 -0.0189 2.1936 -9.4906 16 1 0.8401 3.4041 -9.4449 17 1 -0.9390 2.2831 -10.6527 18 1 -0.8110 2.1013 -8.2379 19 6 2.0323 -0.7103 1.2306 20 6 2.2941 -0.1362 2.4185 21 6 2.7394 -1.1642 3.2810 22 6 2.7224 -2.3051 2.5687 23 8 2.2935 -2.0241 1.3274 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9703 1.4237 0.0004 28 1 3.1301 -0.7209 -1.2493 29 1 1.6767 -1.7490 -1.2491 30 1 0.9938 0.7577 -2.3564 31 1 0.8709 0.9329 -4.6810 32 1 2.8662 -0.3483 -6.2152 33 1 1.4125 -1.3754 -6.2156 34 1 0.0662 0.5318 -7.0527 35 1 1.5203 1.5583 -7.0520 36 1 1.0496 0.6827 -11.6483 37 1 2.1853 0.9095 2.6659 38 1 3.0320 -1.0551 4.3149 39 1 3.0057 -3.2814 2.9332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273559901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:36 Heat of formation + Delta-G solvation = -68.471767 kcal Electronic energy + Delta-G solvation = -21561.898371 eV Core-core repulsion = 18085.428908 eV Total energy + Delta-G solvation = -3476.469463 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.98764 -39.85676 -38.35543 -35.10280 -34.30828 -33.25923 -32.79976 -32.10012 -30.05275 -28.93737 -26.93687 -24.62402 -22.72730 -22.01415 -20.77905 -20.68809 -20.46907 -18.53924 -18.23279 -16.87100 -16.69428 -16.49763 -15.68972 -15.57596 -15.19913 -14.79432 -14.25186 -13.86185 -13.74287 -13.60769 -13.40023 -13.17572 -12.95783 -12.84206 -12.61268 -12.57531 -12.26984 -11.74018 -11.45683 -11.18328 -10.78592 -10.36821 -10.27736 -10.25722 -9.96093 -9.76850 -9.30595 -9.10623 -8.89532 -8.60871 -8.37139 -6.09177 -4.09034 1.32323 2.24287 2.52195 2.88131 3.26789 3.34356 3.35724 3.52064 3.72703 4.12041 4.25401 4.39460 4.52704 4.61704 4.68841 4.77578 5.23783 5.25247 5.31790 5.40380 5.48114 5.54218 5.57776 5.67424 5.76766 6.09450 6.10889 6.27130 6.46926 6.61290 6.71147 6.83644 7.04399 7.09344 7.26998 7.31289 7.69521 8.30668 8.47845 8.91089 8.96038 9.50977 11.03893 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.042459 B = 0.002734 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.302168 B =10240.346055 C =10662.536850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.209 3.791 3 O -0.536 6.536 4 C 0.119 3.881 5 N -0.747 5.747 6 C 0.699 3.301 7 O -0.595 6.595 8 N -0.741 5.741 9 C 0.148 3.852 10 C -0.022 4.022 11 C -0.522 4.522 12 H 0.076 0.924 13 C 0.068 3.932 14 N -0.899 5.899 15 Si 0.883 3.117 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.047 4.047 20 C -0.188 4.188 21 C -0.219 4.219 22 C -0.034 4.034 23 O -0.167 6.167 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.385 0.615 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.398 0.602 31 H 0.392 0.608 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.022 0.978 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 1.115 29.702 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 O -0.343 6.343 4 C -0.007 4.007 5 N -0.405 5.405 6 C 0.399 3.601 7 O -0.473 6.473 8 N -0.395 5.395 9 C 0.026 3.974 10 C -0.060 4.060 11 C -0.560 4.560 12 H 0.094 0.906 13 C -0.134 4.134 14 N -0.537 5.537 15 Si 0.710 3.290 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.098 4.098 20 C -0.207 4.207 21 C -0.238 4.238 22 C -0.102 4.102 23 O -0.062 6.062 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.234 0.766 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.233 0.767 31 H 0.225 0.775 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.879 0.136 29.111 29.125 hybrid contribution -0.310 1.451 0.386 1.534 sum -1.189 1.588 29.497 29.564 Atomic orbital electron populations 1.21800 0.90168 1.03568 1.03801 1.19616 0.95361 0.81205 0.87113 1.86607 1.27878 1.23522 1.96289 1.21690 0.99639 0.96688 0.82672 1.44958 1.57855 1.33657 1.04068 1.16003 0.80616 0.83140 0.80324 1.90911 1.42822 1.27630 1.85943 1.45507 1.55673 1.32368 1.05933 1.21379 0.99906 0.98341 0.77817 1.19797 0.96283 0.95228 0.94644 1.20924 1.32856 1.14188 0.88036 0.90588 1.25010 0.95847 0.97348 0.95156 1.69912 1.45586 1.40615 0.97617 0.86737 0.80848 0.83507 0.77877 1.20257 1.21319 1.19082 1.22979 1.06335 0.81952 0.98517 1.21582 1.05510 1.01066 0.92532 1.21882 1.07682 0.92627 1.01583 1.24160 1.03008 1.00750 0.82250 1.84065 1.64860 1.25344 1.31967 0.91019 0.90526 0.90283 0.76564 0.91144 0.90168 0.76723 0.77532 0.92175 0.92131 0.96018 0.96446 0.92579 0.83093 0.83311 0.77911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.65 37.16 0.32 -0.74 16 2 C 0.21 1.79 0.99 -91.77 -0.09 1.70 16 3 O -0.54 -4.23 12.34 -35.23 -0.43 -4.66 16 4 C 0.12 1.32 4.54 -4.04 -0.02 1.30 16 5 N -0.75 -9.09 5.15 -65.22 -0.34 -9.43 16 6 C 0.70 11.92 8.57 -86.91 -0.74 11.17 16 7 O -0.59 -12.72 16.34 5.29 0.09 -12.64 16 8 N -0.74 -12.49 5.56 -65.23 -0.36 -12.85 16 9 C 0.15 3.09 5.61 -4.04 -0.02 3.07 16 10 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 11 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 12 H 0.08 2.32 7.99 -52.49 -0.42 1.91 16 13 C 0.07 1.96 5.47 -17.81 -0.10 1.86 16 14 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 15 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 19 C -0.05 -0.43 5.85 -35.62 -0.21 -0.63 16 20 C -0.19 -1.56 10.36 -39.70 -0.41 -1.97 16 21 C -0.22 -1.63 10.91 -39.70 -0.43 -2.06 16 22 C -0.03 -0.25 12.09 29.42 0.36 0.10 16 23 O -0.17 -1.64 10.26 5.70 0.06 -1.58 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.56 6.86 -51.93 -0.36 0.21 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.39 2.14 9.04 45.56 0.41 2.55 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.40 3.90 7.21 -40.82 -0.29 3.60 16 31 H 0.39 5.45 8.49 -40.82 -0.35 5.11 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 35 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.20 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -34.88 334.32 -6.38 -41.27 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.74 Total: 6.96 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.80 Total: -1.85 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.07 Total: -49.00 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.29 Total: -18.88 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.88 -6.38 -41.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273559901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.203 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds