Wall clock time and date at job start Tue Mar 31 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47444 * 175.00243 * 4 3 2 6 6 N 1.46505 * 109.47181 * 295.00523 * 4 3 2 7 7 C 1.34775 * 119.99665 * 205.00204 * 6 4 3 8 8 O 1.21587 * 120.00445 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99973 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00488 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47653 * 180.02562 * 10 9 7 12 12 C 1.50691 * 109.47365 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00175 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99880 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00090 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99912 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47257 * 89.99482 * 16 14 12 18 18 H 1.48497 * 109.47276 * 209.99750 * 16 14 12 19 19 H 1.48503 * 109.46877 * 329.99850 * 16 14 12 20 20 C 1.50703 * 109.46935 * 55.00002 * 4 3 2 21 21 C 1.34517 * 125.78677 * 100.00296 * 20 4 3 22 22 C 1.41383 * 106.83829 * 179.97438 * 21 20 4 23 23 C 1.34513 * 106.84299 * 0.02562 * 22 21 20 24 24 O 1.34298 * 125.79082 * 279.69125 * 20 4 3 25 25 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 26 26 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 29 29 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 30 30 H 0.97001 * 119.99978 * 24.99372 * 6 4 3 31 31 H 0.97009 * 119.99944 * 359.97438 * 9 7 6 32 32 H 1.09006 * 109.47023 * 300.00755 * 10 9 7 33 33 H 1.09003 * 109.46743 * 59.99617 * 10 9 7 34 34 H 1.08999 * 109.47269 * 300.00730 * 11 10 9 35 35 H 1.09009 * 109.47071 * 60.00041 * 11 10 9 36 36 H 0.97003 * 120.00110 * 180.02562 * 15 14 12 37 37 H 1.07995 * 126.57663 * 0.03418 * 21 20 4 38 38 H 1.08002 * 126.57847 * 179.97438 * 22 21 20 39 39 H 1.08002 * 125.79253 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9787 2.1764 -0.0889 6 7 3.9757 0.5642 1.2527 7 6 5.2195 0.7944 1.7179 8 8 5.9765 1.5165 1.0982 9 7 5.6244 0.2241 2.8700 10 6 6.9766 0.4737 3.3754 11 6 7.1792 -0.2865 4.6875 12 6 8.5703 -0.0302 5.2070 13 1 9.2426 0.6112 4.6566 14 6 8.9848 -0.6146 6.3851 15 7 8.1660 -1.3952 7.0556 16 14 10.7090 -0.2963 7.0295 17 1 10.6942 0.8954 7.9154 18 1 11.1765 -1.4782 7.7974 19 1 11.6270 -0.0529 5.8878 20 6 3.9723 0.3323 -1.1629 21 6 4.4511 0.7868 -2.3349 22 6 4.7338 -0.3479 -3.1296 23 6 4.4103 -1.4279 -2.3959 24 8 3.9551 -1.0100 -1.2034 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 3.3719 -0.0121 1.7470 31 1 5.0204 -0.3517 3.3646 32 1 7.7073 0.1330 2.6418 33 1 7.1078 1.5417 3.5498 34 1 6.4484 0.0537 5.4212 35 1 7.0481 -1.3545 4.5126 36 1 8.4575 -1.8061 7.8846 37 1 4.5933 1.8202 -2.6147 38 1 5.1321 -0.3475 -4.1335 39 1 4.5055 -2.4567 -2.7104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273603821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:40 Heat of formation + Delta-G solvation = -64.418510 kcal Electronic energy + Delta-G solvation = -21881.173429 eV Core-core repulsion = 18404.879728 eV Total energy + Delta-G solvation = -3476.293700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.45860 -39.66088 -38.20402 -35.37137 -34.47076 -32.95406 -32.76741 -31.01439 -29.16096 -28.39729 -26.41456 -24.70184 -23.19114 -21.73063 -21.15246 -20.61954 -20.10239 -18.15816 -17.62149 -16.87706 -16.37064 -16.27837 -15.80938 -15.49385 -15.15833 -14.93619 -14.48349 -14.30306 -13.64970 -13.49188 -13.17648 -12.86452 -12.72487 -12.56042 -12.43142 -12.22546 -11.89931 -11.60717 -11.15535 -11.00960 -10.60571 -10.29033 -10.05358 -9.92526 -9.80732 -9.53224 -9.23849 -9.17038 -8.47609 -8.39762 -8.22504 -6.06282 -4.08743 1.81151 2.64866 2.92152 3.15879 3.31821 3.37801 3.40075 3.42929 3.65681 4.41780 4.50092 4.65364 4.68670 4.97946 5.01032 5.08026 5.10466 5.12241 5.21383 5.30822 5.34289 5.41437 5.84445 5.92784 6.13122 6.32526 6.43670 6.44924 6.58107 6.79445 6.81571 7.03539 7.22067 7.30611 7.60415 7.67211 7.93082 8.29058 8.45585 8.95569 9.01559 9.55788 11.05416 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023457 B = 0.003258 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.370826 B = 8591.317942 C = 9152.154854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.053 3.947 4 C 0.252 3.748 5 H 0.129 0.871 6 N -0.743 5.743 7 C 0.700 3.300 8 O -0.595 6.595 9 N -0.736 5.736 10 C 0.140 3.860 11 C 0.013 3.987 12 C -0.520 4.520 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.005 4.005 21 C -0.208 4.208 22 C -0.217 4.217 23 C -0.045 4.045 24 O -0.155 6.155 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.402 0.598 31 H 0.394 0.606 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.004 2.650 -17.050 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.025 4.025 4 C 0.145 3.855 5 H 0.147 0.853 6 N -0.399 5.399 7 C 0.400 3.600 8 O -0.474 6.474 9 N -0.389 5.389 10 C 0.018 3.982 11 C -0.025 4.025 12 C -0.559 4.559 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.057 4.057 21 C -0.228 4.228 22 C -0.236 4.236 23 C -0.114 4.114 24 O -0.049 6.049 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.237 0.763 31 H 0.227 0.773 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -16.255 2.864 -17.177 23.822 hybrid contribution 0.286 -0.233 0.565 0.675 sum -15.968 2.631 -16.613 23.192 Atomic orbital electron populations 1.22755 0.80836 1.02949 0.99935 1.87991 1.19738 1.26721 1.95396 1.22918 0.91668 0.86024 1.01860 1.19368 0.91934 0.95100 0.79086 0.85325 1.45070 1.15005 1.54710 1.25153 1.16066 0.81497 0.80836 0.81597 1.90893 1.53874 1.42643 1.59952 1.45516 1.17922 1.52043 1.23421 1.21597 0.79081 1.00292 0.97254 1.19325 0.97678 0.95547 0.89925 1.21057 0.98242 1.29481 1.07108 0.92221 1.24995 0.97673 0.94957 0.96688 1.69956 1.35694 1.31526 1.16178 0.86511 0.84342 0.77708 0.78987 1.20578 1.21201 1.19714 1.22686 1.04158 0.81332 0.97573 1.21512 1.06598 1.00181 0.94543 1.21747 1.07766 0.92263 1.01844 1.24007 1.03309 0.99969 0.84094 1.84059 1.64940 1.21849 1.34079 0.93911 0.94123 0.89511 0.91289 0.91344 0.76303 0.77295 0.92814 0.92739 0.95958 0.95950 0.92886 0.83711 0.83797 0.78536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.83 9.82 -35.23 -0.35 -4.17 16 3 C 0.05 0.46 5.67 37.16 0.21 0.67 16 4 C 0.25 3.05 2.83 -69.08 -0.20 2.85 16 5 H 0.13 1.56 7.57 -51.93 -0.39 1.17 16 6 N -0.74 -10.23 5.04 -59.81 -0.30 -10.54 16 7 C 0.70 12.72 8.52 -86.92 -0.74 11.97 16 8 O -0.60 -12.97 16.01 5.29 0.08 -12.89 16 9 N -0.74 -13.56 5.56 -65.23 -0.36 -13.92 16 10 C 0.14 3.10 5.61 -4.05 -0.02 3.08 16 11 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 12 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 13 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.00 -0.07 5.67 -35.62 -0.20 -0.27 16 21 C -0.21 -2.71 10.80 -39.70 -0.43 -3.13 16 22 C -0.22 -2.61 10.91 -39.70 -0.43 -3.04 16 23 C -0.05 -0.55 12.09 29.42 0.36 -0.19 16 24 O -0.15 -2.26 10.52 5.71 0.06 -2.20 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.40 4.79 8.40 -40.82 -0.34 4.45 16 31 H 0.39 6.32 8.49 -40.82 -0.35 5.97 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.20 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -34.74 341.82 -6.59 -41.33 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.70 Total: 6.24 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -0.90 Total: 0.05 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.07 Total: -50.12 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.20 Total: -19.26 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.74 -6.59 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273603821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.084 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds