Wall clock time and date at job start Tue Mar 31 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47444 * 175.00243 * 4 3 2 6 6 N 1.46505 * 109.47181 * 295.00523 * 4 3 2 7 7 C 1.34775 * 119.99665 * 205.00204 * 6 4 3 8 8 O 1.21587 * 120.00445 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99973 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00488 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47653 * 180.02562 * 10 9 7 12 12 C 1.50691 * 109.47365 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00175 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99880 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00090 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99912 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47257 * 89.99482 * 16 14 12 18 18 H 1.48497 * 109.47276 * 209.99750 * 16 14 12 19 19 H 1.48503 * 109.46877 * 329.99850 * 16 14 12 20 20 C 1.50703 * 109.46935 * 55.00002 * 4 3 2 21 21 C 1.34517 * 125.78677 * 100.00296 * 20 4 3 22 22 C 1.41383 * 106.83829 * 179.97438 * 21 20 4 23 23 C 1.34513 * 106.84299 * 0.02562 * 22 21 20 24 24 O 1.34298 * 125.79082 * 279.69125 * 20 4 3 25 25 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 26 26 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 29 29 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 30 30 H 0.97001 * 119.99978 * 24.99372 * 6 4 3 31 31 H 0.97009 * 119.99944 * 359.97438 * 9 7 6 32 32 H 1.09006 * 109.47023 * 300.00755 * 10 9 7 33 33 H 1.09003 * 109.46743 * 59.99617 * 10 9 7 34 34 H 1.08999 * 109.47269 * 300.00730 * 11 10 9 35 35 H 1.09009 * 109.47071 * 60.00041 * 11 10 9 36 36 H 0.97003 * 120.00110 * 180.02562 * 15 14 12 37 37 H 1.07995 * 126.57663 * 0.03418 * 21 20 4 38 38 H 1.08002 * 126.57847 * 179.97438 * 22 21 20 39 39 H 1.08002 * 125.79253 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9787 2.1764 -0.0889 6 7 3.9757 0.5642 1.2527 7 6 5.2195 0.7944 1.7179 8 8 5.9765 1.5165 1.0982 9 7 5.6244 0.2241 2.8700 10 6 6.9766 0.4737 3.3754 11 6 7.1792 -0.2865 4.6875 12 6 8.5703 -0.0302 5.2070 13 1 9.2426 0.6112 4.6566 14 6 8.9848 -0.6146 6.3851 15 7 8.1660 -1.3952 7.0556 16 14 10.7090 -0.2963 7.0295 17 1 10.6942 0.8954 7.9154 18 1 11.1765 -1.4782 7.7974 19 1 11.6270 -0.0529 5.8878 20 6 3.9723 0.3323 -1.1629 21 6 4.4511 0.7868 -2.3349 22 6 4.7338 -0.3479 -3.1296 23 6 4.4103 -1.4279 -2.3959 24 8 3.9551 -1.0100 -1.2034 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 -0.8899 29 1 1.6887 1.8463 0.8900 30 1 3.3719 -0.0121 1.7470 31 1 5.0204 -0.3517 3.3646 32 1 7.7073 0.1330 2.6418 33 1 7.1078 1.5417 3.5498 34 1 6.4484 0.0537 5.4212 35 1 7.0481 -1.3545 4.5126 36 1 8.4575 -1.8061 7.8846 37 1 4.5933 1.8202 -2.6147 38 1 5.1321 -0.3475 -4.1335 39 1 4.5055 -2.4567 -2.7104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273603821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:40 Heat of formation + Delta-G solvation = -90.059700 kcal Electronic energy + Delta-G solvation = -21882.285314 eV Core-core repulsion = 18404.879728 eV Total energy + Delta-G solvation = -3477.405586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.42467 -41.04444 -39.00103 -36.81294 -35.92247 -34.82663 -33.86756 -32.34519 -30.82697 -29.22067 -27.15367 -26.53634 -24.15460 -23.02705 -22.62672 -22.08020 -21.12980 -19.56935 -18.61078 -18.42212 -17.72014 -17.18349 -16.76231 -16.60324 -16.50823 -16.37437 -15.88890 -15.56990 -15.20316 -14.98266 -14.30550 -14.18873 -13.91651 -13.65997 -13.42363 -13.21760 -13.11069 -12.93469 -12.74043 -12.51459 -12.25360 -12.18799 -11.68297 -11.51015 -11.23631 -10.77472 -10.63953 -10.60054 -10.47988 -9.84026 -9.34064 -8.23124 -6.33482 0.84005 1.42458 1.43362 1.54420 1.61836 1.81599 2.04006 2.30232 2.42447 2.77732 3.11655 3.33608 3.65404 3.88025 4.17976 4.26822 4.33603 4.41923 4.46226 4.51335 4.52752 4.58480 4.62909 4.86824 4.92117 4.93908 5.00689 5.22326 5.30362 5.35579 5.51416 5.60007 5.66049 5.79087 5.99304 6.17731 6.18045 6.32104 6.79618 7.07858 7.35745 7.55877 8.88881 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023457 B = 0.003258 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.370826 B = 8591.317942 C = 9152.154854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.060 3.940 4 C 0.246 3.754 5 H 0.127 0.873 6 N -0.724 5.724 7 C 0.701 3.299 8 O -0.632 6.632 9 N -0.732 5.732 10 C 0.162 3.838 11 C 0.024 3.976 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.927 5.927 16 Si 0.966 3.034 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.267 1.267 20 C -0.026 4.026 21 C -0.222 4.222 22 C -0.227 4.227 23 C -0.054 4.054 24 O -0.177 6.177 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.413 0.587 31 H 0.406 0.594 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.010 0.990 35 H 0.006 0.994 36 H 0.266 0.734 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.466 2.878 -17.630 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.017 4.017 4 C 0.140 3.860 5 H 0.144 0.856 6 N -0.381 5.381 7 C 0.401 3.599 8 O -0.514 6.514 9 N -0.387 5.387 10 C 0.037 3.963 11 C -0.013 4.013 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.078 4.078 21 C -0.241 4.241 22 C -0.246 4.246 23 C -0.122 4.122 24 O -0.072 6.072 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.249 0.751 31 H 0.241 0.759 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -16.783 3.080 -17.773 24.638 hybrid contribution 0.359 -0.335 0.671 0.832 sum -16.424 2.745 -17.101 23.869 Atomic orbital electron populations 1.22902 0.79249 1.03623 1.01052 1.87950 1.21496 1.27363 1.95650 1.22898 0.89100 0.86041 1.03649 1.19643 0.94298 0.94444 0.77603 0.85595 1.44928 1.13383 1.54171 1.25572 1.16141 0.82429 0.80305 0.81046 1.90865 1.55327 1.44277 1.60902 1.45225 1.16883 1.52577 1.23977 1.21077 0.80744 0.99103 0.95347 1.19124 0.96420 0.94778 0.91023 1.21464 0.99532 1.29792 1.07718 0.92271 1.25875 1.01912 0.94537 0.96847 1.70059 1.37677 1.32242 1.16642 0.85434 0.79189 0.77901 0.78457 1.19639 1.20527 1.19104 1.22976 1.05044 0.81393 0.98402 1.21870 1.06264 1.01281 0.94730 1.22116 1.07693 0.91907 1.02878 1.24736 1.02500 1.01591 0.83349 1.84036 1.65589 1.22278 1.35310 0.92688 0.93067 0.89163 0.89323 0.89581 0.75056 0.75851 0.94192 0.93432 0.97136 0.97538 0.92542 0.82438 0.81560 0.75489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -7.51 9.82 -148.98 -1.46 -8.98 16 3 C 0.06 0.95 5.67 71.98 0.41 1.35 16 4 C 0.25 5.74 2.83 44.24 0.13 5.87 16 5 H 0.13 2.99 7.57 -2.39 -0.02 2.97 16 6 N -0.72 -19.44 5.04 -461.40 -2.33 -21.77 16 7 C 0.70 25.34 8.52 179.05 1.53 26.87 16 8 O -0.63 -27.72 16.01 -3.99 -0.06 -27.79 16 9 N -0.73 -27.01 5.56 -478.54 -2.66 -29.67 16 10 C 0.16 7.24 5.61 86.38 0.48 7.73 16 11 C 0.02 1.24 5.09 29.84 0.15 1.39 16 12 C -0.55 -31.04 9.11 25.60 0.23 -30.80 16 13 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 14 C 0.01 0.40 5.46 84.66 0.46 0.86 16 15 N -0.93 -54.84 13.29 21.45 0.28 -54.56 16 16 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 C -0.03 -0.70 5.67 24.83 0.14 -0.56 16 21 C -0.22 -5.58 10.80 22.19 0.24 -5.34 16 22 C -0.23 -5.16 10.91 22.19 0.24 -4.92 16 23 C -0.05 -1.25 12.09 66.97 0.81 -0.44 16 24 O -0.18 -5.04 10.52 -2.48 -0.03 -5.07 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.48 8.14 -2.38 -0.02 0.47 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.41 9.39 8.40 -92.71 -0.78 8.61 16 31 H 0.41 12.93 8.49 -92.70 -0.79 12.14 16 32 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 36 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 37 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.23 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -74.21 341.82 1.34 -72.87 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.50 Total: 25.29 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.07 Total: 3.58 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -4.70 Total: -105.99 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.55 Total: -41.83 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -74.21 1.34 -72.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273603821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.187 kcal (2) G-P(sol) polarization free energy of solvation -74.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds