Wall clock time and date at job start Tue Mar 31 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39336 * 119.12532 * 2 1 4 4 C 1.36574 * 119.93105 * 179.97438 * 3 2 1 5 5 C 1.40764 * 118.15405 * 359.95704 * 4 3 2 6 6 C 1.40430 * 121.37794 * 180.02562 * 5 4 3 7 7 C 1.36139 * 119.61389 * 180.24968 * 6 5 4 8 8 C 1.50701 * 119.56883 * 179.72552 * 7 6 5 9 9 N 1.46502 * 109.47144 * 90.00241 * 8 7 6 10 10 C 1.36929 * 120.00013 * 90.00125 * 9 8 7 11 11 H 1.07999 * 120.00137 * 304.47255 * 10 9 8 12 12 C 1.38811 * 119.99914 * 124.46910 * 10 9 8 13 13 N 1.31621 * 120.00050 * 164.67172 * 12 10 9 14 14 Si 1.86803 * 120.00099 * 344.67425 * 12 10 9 15 15 H 1.48497 * 109.46855 * 91.90182 * 14 12 10 16 16 H 1.48503 * 109.46829 * 211.90154 * 14 12 10 17 17 H 1.48501 * 109.47040 * 331.90390 * 14 12 10 18 18 C 1.46494 * 119.99641 * 270.00153 * 9 8 7 19 19 C 1.53002 * 117.49440 * 183.07033 * 18 9 8 20 20 C 1.53003 * 117.49704 * 114.41362 * 18 9 8 21 21 C 1.39361 * 120.86979 * 359.49420 * 7 6 5 22 22 C 1.36078 * 121.06106 * 0.49552 * 21 7 6 23 23 C 1.40596 * 119.74960 * 359.76598 * 22 21 7 24 24 N 1.31079 * 119.12544 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47330 * 270.02981 * 1 2 3 26 26 H 1.08999 * 109.46890 * 30.03020 * 1 2 3 27 27 H 1.08997 * 109.47285 * 150.02235 * 1 2 3 28 28 H 1.07994 * 120.03089 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.91682 * 180.02562 * 4 3 2 30 30 H 1.07996 * 120.19636 * 359.97438 * 6 5 4 31 31 H 1.08998 * 109.47401 * 210.00461 * 8 7 6 32 32 H 1.09006 * 109.46782 * 330.00030 * 8 7 6 33 33 H 0.97001 * 120.00156 * 179.97438 * 13 12 10 34 34 H 1.09001 * 115.55280 * 328.74188 * 18 9 8 35 35 H 1.08994 * 117.50311 * 359.97438 * 19 18 9 36 36 H 1.09003 * 117.49722 * 145.02414 * 19 18 9 37 37 H 1.09006 * 117.49590 * 214.97860 * 20 18 9 38 38 H 1.08993 * 117.50049 * 359.96949 * 20 18 9 39 39 H 1.07997 * 119.46863 * 180.24536 * 21 7 6 40 40 H 1.08004 * 120.12581 * 179.79058 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2172 0.0000 4 6 3.5508 1.2364 0.0005 5 6 4.2324 0.0048 0.0020 6 6 5.6354 -0.0545 0.0032 7 6 6.2576 -1.2654 -0.0006 8 6 7.7633 -1.3278 -0.0056 9 7 8.2558 -1.3500 1.3740 10 6 8.4369 -2.5452 2.0171 11 1 7.6177 -3.2444 2.0981 12 6 9.6733 -2.8582 2.5649 13 7 9.7791 -3.8441 3.4305 14 14 11.1872 -1.8802 2.0737 15 1 11.3763 -0.7520 3.0205 16 1 12.3805 -2.7633 2.1111 17 1 11.0080 -1.3480 0.6990 18 6 8.5545 -0.0935 2.0653 19 6 9.1334 -0.1852 3.4786 20 6 7.6874 0.2725 3.2717 21 6 5.5205 -2.4481 0.0050 22 6 4.1599 -2.4274 0.0042 23 6 3.4809 -1.1962 0.0027 24 7 2.1450 -1.1450 0.0005 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6315 2.1444 -0.0004 29 1 4.0926 2.1707 0.0010 30 1 6.2175 0.8552 0.0025 31 1 8.0879 -2.2312 -0.5219 32 1 8.1615 -0.4528 -0.5196 33 1 10.6431 -4.0631 3.8131 34 1 8.9031 0.7211 1.4305 35 1 9.2916 -1.1803 3.8941 36 1 9.8626 0.5693 3.7737 37 1 7.4660 1.3279 3.4306 38 1 6.8945 -0.4214 3.5506 39 1 6.0375 -3.3963 0.0059 40 1 3.6037 -3.3532 0.0052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275663043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:58 Heat of formation + Delta-G solvation = 101.022103 kcal Electronic energy + Delta-G solvation = -21575.135126 eV Core-core repulsion = 18549.157483 eV Total energy + Delta-G solvation = -3025.977643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60195 -37.88977 -36.74738 -33.37844 -33.26569 -32.21889 -31.08553 -29.75522 -28.07684 -25.37005 -23.61372 -23.42376 -21.82520 -21.57481 -21.29585 -19.80734 -17.73225 -16.88462 -16.54952 -16.03855 -15.21312 -14.72653 -14.53729 -14.24606 -14.04171 -13.78159 -13.55637 -13.16406 -12.88649 -12.83792 -12.70928 -12.23703 -12.08306 -11.89024 -11.56339 -11.09126 -10.96472 -10.81562 -10.71261 -10.43879 -10.37622 -10.33661 -9.83977 -9.53151 -9.31171 -9.16894 -8.50143 -8.30170 -7.83486 -6.52455 -6.06234 -3.76860 0.67520 1.08653 2.30351 3.18506 3.35886 3.45028 3.51648 4.32141 4.35647 4.48482 4.69353 4.85069 4.90700 4.95622 4.98709 5.17251 5.29519 5.36390 5.46153 5.50862 5.55858 5.63627 5.69681 5.82272 5.90356 5.97900 6.06216 6.09784 6.11480 6.21321 6.36391 6.41829 6.49529 6.55750 6.56646 6.71306 6.79902 7.01054 7.08333 7.24554 7.29096 8.04591 8.13364 8.46589 8.94188 9.58046 10.06675 11.03142 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029035 B = 0.004496 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.120992 B = 6226.630920 C = 6567.254243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.141 3.859 3 C -0.183 4.183 4 C -0.056 4.056 5 C -0.101 4.101 6 C -0.097 4.097 7 C -0.070 4.070 8 C 0.178 3.822 9 N -0.565 5.565 10 C -0.286 4.286 11 H 0.071 0.929 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.885 3.115 15 H -0.270 1.270 16 H -0.304 1.304 17 H -0.270 1.270 18 C 0.109 3.891 19 C -0.197 4.197 20 C -0.211 4.211 21 C -0.067 4.067 22 C -0.109 4.109 23 C 0.126 3.874 24 N -0.476 5.476 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.266 0.734 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 10.265 -7.708 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.012 4.012 3 C -0.203 4.203 4 C -0.082 4.082 5 C -0.103 4.103 6 C -0.117 4.117 7 C -0.073 4.073 8 C 0.053 3.947 9 N -0.283 5.283 10 C -0.415 4.415 11 H 0.088 0.912 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.713 3.287 15 H -0.196 1.196 16 H -0.232 1.232 17 H -0.195 1.195 18 C 0.002 3.998 19 C -0.235 4.235 20 C -0.251 4.251 21 C -0.087 4.087 22 C -0.128 4.128 23 C 0.005 3.995 24 N -0.185 5.185 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.150 0.850 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.773 9.258 -7.616 16.802 hybrid contribution 1.301 1.315 0.162 1.857 sum -10.471 10.572 -7.454 16.643 Atomic orbital electron populations 1.20713 0.89171 1.03162 1.02922 1.21344 0.96797 0.88405 0.94692 1.21572 0.95037 0.98879 1.04764 1.21425 0.94331 0.97330 0.95072 1.18818 0.95009 0.93683 1.02823 1.20748 0.91872 0.98171 1.00871 1.20806 0.99425 0.92286 0.94779 1.20056 0.86746 1.00682 0.87261 1.43523 1.75128 1.01176 1.08520 1.18536 0.95355 0.94121 1.33454 0.91162 1.25850 0.98097 0.94897 0.95572 1.69867 1.25120 1.30564 1.27865 0.86795 0.82162 0.79691 0.80040 1.19578 1.23210 1.19489 1.21311 1.01175 0.90117 0.87230 1.23510 0.95218 1.03678 1.01064 1.23332 0.94727 0.99082 1.08009 1.20971 0.93122 0.99044 0.95593 1.20723 0.94148 0.96033 1.01867 1.18787 0.88666 0.93160 0.98929 1.67800 1.08827 1.28691 1.13200 0.90548 0.90928 0.90625 0.85206 0.84835 0.85944 0.91150 0.93343 0.92462 0.89580 0.86234 0.90743 0.91218 0.89396 0.85030 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.14 36.01 0.37 -0.59 16 2 C 0.14 1.88 6.78 -82.50 -0.56 1.32 16 3 C -0.18 -2.17 9.64 -39.77 -0.38 -2.56 16 4 C -0.06 -0.73 9.90 -39.23 -0.39 -1.12 16 5 C -0.10 -1.62 5.74 -106.81 -0.61 -2.23 16 6 C -0.10 -1.56 9.38 -39.51 -0.37 -1.93 16 7 C -0.07 -1.24 5.43 -104.96 -0.57 -1.81 16 8 C 0.18 3.36 5.81 -5.19 -0.03 3.33 16 9 N -0.56 -12.66 2.03 -167.02 -0.34 -13.00 16 10 C -0.29 -7.56 9.17 -15.06 -0.14 -7.69 16 11 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 12 C 0.06 1.61 3.74 -17.43 -0.07 1.54 16 13 N -0.90 -26.15 13.97 55.49 0.78 -25.37 16 14 Si 0.89 21.41 24.88 -169.99 -4.23 17.18 16 15 H -0.27 -6.27 5.80 56.52 0.33 -5.94 16 16 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.11 2.27 5.16 -67.93 -0.35 1.92 16 19 C -0.20 -4.27 6.69 -26.69 -0.18 -4.45 16 20 C -0.21 -4.22 10.36 -26.69 -0.28 -4.50 16 21 C -0.07 -1.17 9.58 -39.94 -0.38 -1.55 16 22 C -0.11 -1.84 9.98 -39.47 -0.39 -2.23 16 23 C 0.13 2.16 6.60 -84.86 -0.56 1.60 16 24 N -0.48 -7.76 10.24 -7.22 -0.07 -7.84 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 30 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.07 1.33 7.98 -51.93 -0.41 0.92 16 32 H 0.05 0.81 8.00 -51.93 -0.42 0.40 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.12 3.02 5.08 -51.93 -0.26 2.76 16 36 H 0.07 1.47 7.86 -51.93 -0.41 1.06 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 39 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 329.59 15.07 4.97 4.97 Total: -1.00 -30.34 329.59 -9.58 -39.92 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.78 Total: 5.09 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -4.90 Total: -20.95 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.36 Total: -46.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.23 Total: 17.18 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.34 -9.58 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275663043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.940 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds