Wall clock time and date at job start Tue Mar 31 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39336 * 119.12532 * 2 1 4 4 C 1.36574 * 119.93105 * 179.97438 * 3 2 1 5 5 C 1.40764 * 118.15405 * 359.95704 * 4 3 2 6 6 C 1.40430 * 121.37794 * 180.02562 * 5 4 3 7 7 C 1.36139 * 119.61389 * 180.24968 * 6 5 4 8 8 C 1.50701 * 119.56883 * 179.72552 * 7 6 5 9 9 N 1.46502 * 109.47144 * 90.00241 * 8 7 6 10 10 C 1.36929 * 120.00013 * 90.00125 * 9 8 7 11 11 H 1.07999 * 120.00137 * 304.47255 * 10 9 8 12 12 C 1.38811 * 119.99914 * 124.46910 * 10 9 8 13 13 N 1.31621 * 120.00050 * 164.67172 * 12 10 9 14 14 Si 1.86803 * 120.00099 * 344.67425 * 12 10 9 15 15 H 1.48497 * 109.46855 * 91.90182 * 14 12 10 16 16 H 1.48503 * 109.46829 * 211.90154 * 14 12 10 17 17 H 1.48501 * 109.47040 * 331.90390 * 14 12 10 18 18 C 1.46494 * 119.99641 * 270.00153 * 9 8 7 19 19 C 1.53002 * 117.49440 * 183.07033 * 18 9 8 20 20 C 1.53003 * 117.49704 * 114.41362 * 18 9 8 21 21 C 1.39361 * 120.86979 * 359.49420 * 7 6 5 22 22 C 1.36078 * 121.06106 * 0.49552 * 21 7 6 23 23 C 1.40596 * 119.74960 * 359.76598 * 22 21 7 24 24 N 1.31079 * 119.12544 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47330 * 270.02981 * 1 2 3 26 26 H 1.08999 * 109.46890 * 30.03020 * 1 2 3 27 27 H 1.08997 * 109.47285 * 150.02235 * 1 2 3 28 28 H 1.07994 * 120.03089 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.91682 * 180.02562 * 4 3 2 30 30 H 1.07996 * 120.19636 * 359.97438 * 6 5 4 31 31 H 1.08998 * 109.47401 * 210.00461 * 8 7 6 32 32 H 1.09006 * 109.46782 * 330.00030 * 8 7 6 33 33 H 0.97001 * 120.00156 * 179.97438 * 13 12 10 34 34 H 1.09001 * 115.55280 * 328.74188 * 18 9 8 35 35 H 1.08994 * 117.50311 * 359.97438 * 19 18 9 36 36 H 1.09003 * 117.49722 * 145.02414 * 19 18 9 37 37 H 1.09006 * 117.49590 * 214.97860 * 20 18 9 38 38 H 1.08993 * 117.50049 * 359.96949 * 20 18 9 39 39 H 1.07997 * 119.46863 * 180.24536 * 21 7 6 40 40 H 1.08004 * 120.12581 * 179.79058 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2172 0.0000 4 6 3.5508 1.2364 0.0005 5 6 4.2324 0.0048 0.0020 6 6 5.6354 -0.0545 0.0032 7 6 6.2576 -1.2654 -0.0006 8 6 7.7633 -1.3278 -0.0056 9 7 8.2558 -1.3500 1.3740 10 6 8.4369 -2.5452 2.0171 11 1 7.6177 -3.2444 2.0981 12 6 9.6733 -2.8582 2.5649 13 7 9.7791 -3.8441 3.4305 14 14 11.1872 -1.8802 2.0737 15 1 11.3763 -0.7520 3.0205 16 1 12.3805 -2.7633 2.1111 17 1 11.0080 -1.3480 0.6990 18 6 8.5545 -0.0935 2.0653 19 6 9.1334 -0.1852 3.4786 20 6 7.6874 0.2725 3.2717 21 6 5.5205 -2.4481 0.0050 22 6 4.1599 -2.4274 0.0042 23 6 3.4809 -1.1962 0.0027 24 7 2.1450 -1.1450 0.0005 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6315 2.1444 -0.0004 29 1 4.0926 2.1707 0.0010 30 1 6.2175 0.8552 0.0025 31 1 8.0879 -2.2312 -0.5219 32 1 8.1615 -0.4528 -0.5196 33 1 10.6431 -4.0631 3.8131 34 1 8.9031 0.7211 1.4305 35 1 9.2916 -1.1803 3.8941 36 1 9.8626 0.5693 3.7737 37 1 7.4660 1.3279 3.4306 38 1 6.8945 -0.4214 3.5506 39 1 6.0375 -3.3963 0.0059 40 1 3.6037 -3.3532 0.0052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275663043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:57 Heat of formation + Delta-G solvation = 84.422921 kcal Electronic energy + Delta-G solvation = -21575.854920 eV Core-core repulsion = 18549.157483 eV Total energy + Delta-G solvation = -3026.697437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73760 -39.37560 -38.14607 -34.91237 -34.41084 -34.02368 -32.42512 -31.02394 -29.27028 -26.97916 -25.07739 -24.67947 -23.22907 -22.96413 -22.56557 -21.56620 -18.92214 -18.76394 -17.76953 -17.17998 -16.75294 -16.62352 -15.65170 -15.53552 -15.38032 -15.20505 -14.87645 -14.79875 -14.10986 -13.98792 -13.80388 -13.66609 -13.50291 -13.11891 -12.98232 -12.63825 -12.41863 -12.36579 -12.10962 -12.00890 -11.93926 -11.78061 -11.45236 -11.27996 -10.85912 -10.48869 -10.39512 -9.49775 -9.08568 -8.38079 -8.11615 -5.85833 -0.45085 -0.07018 1.12617 1.45094 1.47873 1.60462 2.00533 2.48445 3.02506 3.10301 3.31154 3.34454 3.46258 3.70365 3.83361 3.96376 4.02809 4.19301 4.25877 4.34642 4.37380 4.46618 4.52991 4.56124 4.67753 4.75149 4.82657 4.92186 4.94417 4.98608 5.03953 5.10464 5.16662 5.19017 5.29066 5.33809 5.45208 5.56247 5.71986 5.75936 6.00183 6.02202 6.31461 7.04639 7.11204 7.58491 8.09006 8.97384 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029035 B = 0.004496 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.120992 B = 6226.630920 C = 6567.254243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.138 3.862 3 C -0.175 4.175 4 C -0.055 4.055 5 C -0.121 4.121 6 C -0.082 4.082 7 C -0.094 4.094 8 C 0.179 3.821 9 N -0.576 5.576 10 C -0.272 4.272 11 H 0.020 0.980 12 C 0.012 3.988 13 N -0.948 5.948 14 Si 0.946 3.054 15 H -0.250 1.250 16 H -0.317 1.317 17 H -0.256 1.256 18 C 0.106 3.894 19 C -0.213 4.213 20 C -0.195 4.195 21 C -0.084 4.084 22 C -0.122 4.122 23 C 0.104 3.896 24 N -0.513 5.513 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.174 0.826 29 H 0.170 0.830 30 H 0.150 0.850 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.264 0.736 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.116 0.884 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 15.204 -8.875 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.015 4.015 3 C -0.194 4.194 4 C -0.080 4.080 5 C -0.123 4.123 6 C -0.102 4.102 7 C -0.096 4.096 8 C 0.055 3.945 9 N -0.295 5.295 10 C -0.402 4.402 11 H 0.038 0.962 12 C -0.186 4.186 13 N -0.590 5.590 14 Si 0.772 3.228 15 H -0.174 1.174 16 H -0.246 1.246 17 H -0.180 1.180 18 C 0.000 4.000 19 C -0.251 4.251 20 C -0.235 4.235 21 C -0.104 4.104 22 C -0.141 4.141 23 C -0.016 4.016 24 N -0.224 5.224 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.088 0.912 28 H 0.192 0.808 29 H 0.187 0.813 30 H 0.167 0.833 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.711 14.223 -8.808 21.011 hybrid contribution 1.277 -0.179 0.528 1.393 sum -11.435 14.044 -8.280 19.914 Atomic orbital electron populations 1.20856 0.86402 1.04573 1.04015 1.22191 0.98788 0.88344 0.92191 1.22070 0.94958 0.99911 1.02503 1.21853 0.95057 0.97278 0.93842 1.19078 0.95110 0.94643 1.03505 1.20989 0.92266 0.98197 0.98701 1.20630 0.98579 0.92965 0.97452 1.20110 0.87570 1.01534 0.85318 1.43613 1.75529 1.00500 1.09894 1.18226 0.93858 0.95072 1.33047 0.96241 1.26448 1.00878 0.95924 0.95346 1.70006 1.25579 1.33363 1.30040 0.85824 0.77787 0.78642 0.80593 1.17421 1.24629 1.17976 1.21638 1.01006 0.89998 0.87379 1.23429 0.97123 1.02376 1.02146 1.23254 0.92743 1.00415 1.07092 1.20919 0.93575 0.98922 0.96979 1.20786 0.94008 0.96790 1.02510 1.18961 0.89559 0.93559 0.99542 1.67836 1.08512 1.30692 1.15351 0.89413 0.87607 0.91183 0.80817 0.81293 0.83276 0.92520 0.90037 0.92714 0.85556 0.90450 0.88129 0.87183 0.92812 0.86638 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 10.14 71.24 0.72 -0.83 16 2 C 0.14 3.30 6.78 42.94 0.29 3.59 16 3 C -0.18 -3.37 9.64 22.15 0.21 -3.15 16 4 C -0.05 -1.20 9.90 22.50 0.22 -0.98 16 5 C -0.12 -3.66 5.74 -21.28 -0.12 -3.78 16 6 C -0.08 -2.48 9.38 22.32 0.21 -2.27 16 7 C -0.09 -3.32 5.43 -20.08 -0.11 -3.43 16 8 C 0.18 6.65 5.81 85.63 0.50 7.14 16 9 N -0.58 -25.61 2.03 -682.34 -1.39 -27.00 16 10 C -0.27 -15.05 9.17 84.03 0.77 -14.28 16 11 H 0.02 1.27 8.06 -2.91 -0.02 1.25 16 12 C 0.01 0.69 3.74 84.86 0.32 1.01 16 13 N -0.95 -58.38 13.97 21.65 0.30 -58.08 16 14 Si 0.95 44.29 24.88 68.60 1.71 46.00 16 15 H -0.25 -10.78 5.80 99.48 0.58 -10.21 16 16 H -0.32 -15.45 7.11 99.48 0.71 -14.74 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 18 C 0.11 4.12 5.16 44.99 0.23 4.35 16 19 C -0.21 -8.82 6.69 30.62 0.20 -8.61 16 20 C -0.19 -7.34 10.36 30.62 0.32 -7.03 16 21 C -0.08 -3.14 9.58 22.04 0.21 -2.93 16 22 C -0.12 -4.41 9.98 22.34 0.22 -4.18 16 23 C 0.10 3.60 6.60 40.29 0.27 3.87 16 24 N -0.51 -16.53 10.24 -176.76 -1.81 -18.34 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.11 0.93 8.07 -2.39 -0.02 0.91 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 29 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.06 2.21 7.98 -2.39 -0.02 2.19 16 32 H 0.08 2.47 8.00 -2.38 -0.02 2.46 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 34 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 35 H 0.08 3.95 5.08 -2.39 -0.01 3.94 16 36 H 0.10 3.61 7.86 -2.39 -0.02 3.59 16 37 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 38 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 40 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -71.15 329.59 4.17 -66.97 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.89 Total: 21.94 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 4.47 Total: -31.50 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -2.89 Total: -103.41 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.71 Total: 46.00 kcal Total: -71.15 4.17 -66.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275663043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.396 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds