Wall clock time and date at job start Tue Mar 31 2020 06:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29944 * 126.28722 * 2 1 4 4 O 1.21301 * 110.25191 * 180.02562 * 3 2 1 5 5 C 1.33647 * 109.80866 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.54755 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47239 * 120.02463 * 6 5 4 8 8 C 1.52999 * 109.47283 * 240.02026 * 6 5 4 9 9 N 1.46504 * 109.47650 * 0.02562 * 6 5 4 10 10 C 1.34768 * 120.00311 * 180.02562 * 9 6 5 11 11 O 1.21590 * 120.00261 * 359.97438 * 10 9 6 12 12 N 1.34776 * 120.00290 * 179.97438 * 10 9 6 13 13 C 1.46497 * 120.00427 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47450 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47487 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99543 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00185 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99851 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99895 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.47141 * 89.99830 * 19 17 15 21 21 H 1.48500 * 109.47510 * 209.99498 * 19 17 15 22 22 H 1.48495 * 109.47542 * 330.00027 * 19 17 15 23 23 N 1.31130 * 106.89825 * 0.22886 * 5 4 3 24 24 H 1.08995 * 109.47083 * 89.97409 * 1 2 3 25 25 H 1.08998 * 109.46792 * 209.97814 * 1 2 3 26 26 H 1.09000 * 109.47104 * 329.96942 * 1 2 3 27 27 H 1.09001 * 109.46801 * 179.97438 * 7 6 5 28 28 H 1.09001 * 109.46998 * 299.99373 * 7 6 5 29 29 H 1.09000 * 109.47050 * 59.99664 * 7 6 5 30 30 H 1.09000 * 109.47160 * 300.00430 * 8 6 5 31 31 H 1.09002 * 109.46719 * 60.00151 * 8 6 5 32 32 H 1.08993 * 109.47839 * 179.97438 * 8 6 5 33 33 H 0.97006 * 119.99455 * 359.97438 * 9 6 5 34 34 H 0.97006 * 119.99477 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.47182 * 300.00307 * 13 12 10 36 36 H 1.09005 * 109.47102 * 60.00084 * 13 12 10 37 37 H 1.09000 * 109.47305 * 300.00386 * 14 13 12 38 38 H 1.09002 * 109.47063 * 59.99615 * 14 13 12 39 39 H 0.97006 * 119.99995 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7969 -1.4370 -0.0014 7 6 4.8362 -2.3197 1.2478 8 6 4.8344 -2.3194 -1.2507 9 7 5.9553 -0.5401 -0.0020 10 6 7.2027 -1.0503 -0.0035 11 8 7.3667 -2.2551 -0.0038 12 7 8.2683 -0.2252 -0.0046 13 6 9.6243 -0.7798 -0.0056 14 6 10.6424 0.3621 -0.0074 15 6 12.0373 -0.2084 -0.0091 16 1 12.1829 -1.2785 -0.0085 17 6 13.1274 0.6358 -0.0103 18 7 12.9500 1.9389 -0.0105 19 14 14.8563 -0.0715 -0.0117 20 1 15.3132 -0.2594 -1.4122 21 1 15.7743 0.8635 0.6871 22 1 14.8561 -1.3809 0.6887 23 7 2.3030 -1.0841 -0.0047 24 1 -0.3633 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5143 27 1 5.7525 -2.9101 1.2467 28 1 4.8096 -1.6912 2.1379 29 1 3.9744 -2.9871 1.2483 30 1 3.9726 -2.9867 -1.2502 31 1 4.8064 -1.6905 -2.1406 32 1 5.7510 -2.9091 -1.2517 33 1 5.8244 0.4211 -0.0021 34 1 8.1374 0.7360 -0.0047 35 1 9.7668 -1.3928 0.8844 36 1 9.7653 -1.3932 -0.8956 37 1 10.4998 0.9748 -0.8976 38 1 10.5016 0.9759 0.8823 39 1 13.7170 2.5328 -0.0110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288360397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:59 Heat of formation + Delta-G solvation = 29.621570 kcal Electronic energy + Delta-G solvation = -21864.332644 eV Core-core repulsion = 18424.409579 eV Total energy + Delta-G solvation = -3439.923065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.91957 -40.16147 -37.10316 -36.28005 -34.73754 -33.11803 -32.72451 -31.27801 -29.55181 -29.13146 -27.49966 -25.23908 -24.53287 -23.05136 -21.71450 -20.82211 -19.94439 -18.67862 -18.43181 -17.61632 -16.36506 -16.07232 -15.28595 -15.07719 -14.52824 -14.34473 -14.26098 -14.04538 -13.89611 -13.53693 -13.31799 -13.22097 -12.71001 -12.44678 -12.28870 -12.18909 -11.92785 -11.68435 -11.51552 -11.33280 -11.19955 -11.03158 -10.63592 -10.33642 -10.25240 -9.87487 -9.56828 -9.26655 -9.24058 -8.51763 -8.31751 -6.09517 -4.12267 0.80094 1.88553 2.32607 2.54989 3.29647 3.35953 3.39715 3.43696 3.44759 3.73892 4.34954 4.42801 4.56284 4.71428 4.74571 4.98446 5.03296 5.14974 5.27765 5.47534 5.51227 5.54093 5.62619 5.64270 5.67159 6.10745 6.16695 6.25141 6.35990 6.37282 6.75080 6.94208 7.07979 7.54866 7.62283 7.82503 7.89399 8.22224 8.33928 8.84869 8.94452 9.52595 11.02114 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041088 B = 0.002841 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.307975 B = 9852.353668 C =10332.000130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.169 3.831 3 N -0.383 5.383 4 O 0.076 5.924 5 C 0.189 3.811 6 C 0.298 3.702 7 C -0.160 4.160 8 C -0.160 4.160 9 N -0.754 5.754 10 C 0.708 3.292 11 O -0.589 6.589 12 N -0.734 5.734 13 C 0.140 3.860 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 N -0.471 5.471 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.400 0.600 34 H 0.395 0.605 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.219 -3.767 0.039 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 N -0.092 5.092 4 O 0.019 5.981 5 C -0.033 4.033 6 C 0.208 3.792 7 C -0.219 4.219 8 C -0.219 4.219 9 N -0.412 5.412 10 C 0.409 3.591 11 O -0.467 6.467 12 N -0.387 5.387 13 C 0.018 3.982 14 C -0.026 4.026 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.205 5.205 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.235 0.765 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.566 -4.202 0.039 23.937 hybrid contribution 0.921 0.850 -0.021 1.253 sum -22.645 -3.352 0.018 22.892 Atomic orbital electron populations 1.20150 0.82722 1.04767 1.04398 1.25984 1.00688 0.83300 1.00423 1.74647 0.89236 1.23769 1.21554 1.85272 1.22621 1.24523 1.65657 1.28912 0.97029 0.82038 0.95317 1.18452 0.75014 0.86203 0.99538 1.22333 1.05562 0.99746 0.94247 1.22332 1.05564 0.99758 0.94239 1.45194 1.04062 1.09512 1.82471 1.15825 0.79756 0.85784 0.77778 1.90837 1.84930 1.12775 1.58179 1.45570 1.06094 1.09140 1.77917 1.21632 0.77489 0.98302 1.00806 1.19334 0.92539 0.92806 0.97877 1.21042 0.90326 0.93259 1.51317 0.92190 1.24997 0.99496 0.94819 0.95016 1.69956 1.30806 1.02165 1.50385 0.86511 0.83883 0.78958 0.78192 1.20570 1.21208 1.19712 1.71807 0.99036 1.29221 1.20448 0.89227 0.88904 0.89425 0.87672 0.92161 0.90622 0.90610 0.92178 0.87669 0.76529 0.77195 0.92575 0.92583 0.95943 0.95933 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.01 0.38 -0.01 16 2 C 0.17 1.79 8.22 -156.37 -1.28 0.51 16 3 N -0.38 -4.62 12.16 30.90 0.38 -4.24 16 4 O 0.08 0.90 10.41 18.09 0.19 1.09 16 5 C 0.19 2.15 6.74 -13.06 -0.09 2.06 16 6 C 0.30 3.39 1.02 -132.97 -0.14 3.26 16 7 C -0.16 -1.80 8.38 37.16 0.31 -1.48 16 8 C -0.16 -1.80 8.38 37.16 0.31 -1.49 16 9 N -0.75 -9.16 5.10 -53.50 -0.27 -9.43 16 10 C 0.71 11.15 7.98 -86.93 -0.69 10.46 16 11 O -0.59 -10.81 12.55 5.29 0.07 -10.74 16 12 N -0.73 -12.13 5.56 -65.23 -0.36 -12.49 16 13 C 0.14 2.86 5.61 -4.05 -0.02 2.83 16 14 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 15 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 N -0.47 -5.39 11.55 -9.87 -0.11 -5.51 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 1.38 6.16 -51.93 -0.32 1.06 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.10 1.38 6.16 -51.93 -0.32 1.06 16 33 H 0.40 4.13 7.79 -40.82 -0.32 3.81 16 34 H 0.39 5.68 8.49 -40.82 -0.35 5.33 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -31.37 332.20 -6.67 -38.05 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.50 Total: 3.98 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.78 Total: 3.31 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.36 Total: -56.84 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.25 Total: -9.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.37 -6.67 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288360397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.667 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds