Wall clock time and date at job start Tue Mar 31 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46883 * 2 1 4 4 C 1.52997 * 109.47427 * 239.99915 * 2 1 3 5 5 O 1.45196 * 109.47014 * 119.99723 * 2 1 3 6 6 C 1.34234 * 116.99938 * 60.00164 * 5 2 1 7 7 O 1.20822 * 119.99973 * 0.02562 * 6 5 2 8 8 C 1.50700 * 120.00068 * 179.97438 * 6 5 2 9 9 C 1.50697 * 109.47266 * 180.02562 * 8 6 5 10 10 N 1.29944 * 126.28786 * 90.02331 * 9 8 6 11 11 O 1.21305 * 110.24924 * 179.97438 * 10 9 8 12 12 C 1.33645 * 109.81053 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.54912 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47352 * 269.97703 * 13 12 11 15 15 C 1.50700 * 109.46980 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00491 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99918 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00121 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99944 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47185 * 90.00067 * 19 17 15 21 21 H 1.48507 * 109.46828 * 210.00103 * 19 17 15 22 22 H 1.48502 * 109.46963 * 329.99711 * 19 17 15 23 23 N 1.31134 * 106.89776 * 359.77382 * 12 11 10 24 24 H 1.08998 * 109.47018 * 300.00366 * 1 2 3 25 25 H 1.08994 * 109.46696 * 60.00313 * 1 2 3 26 26 H 1.08995 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47084 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47659 * 299.99940 * 3 2 1 29 29 H 1.08998 * 109.47592 * 59.99986 * 3 2 1 30 30 H 1.09006 * 109.47130 * 300.00224 * 4 2 1 31 31 H 1.09003 * 109.47043 * 59.99678 * 4 2 1 32 32 H 1.08999 * 109.47232 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46932 * 300.00373 * 8 6 5 34 34 H 1.08997 * 109.47392 * 59.99712 * 8 6 5 35 35 H 1.09003 * 109.47014 * 29.97989 * 13 12 11 36 36 H 1.08998 * 109.46757 * 149.97776 * 13 12 11 37 37 H 1.08990 * 109.47481 * 300.00339 * 14 13 12 38 38 H 1.09006 * 109.46863 * 60.00287 * 14 13 12 39 39 H 0.97001 * 120.00205 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5079 8 6 2.1182 -2.7437 2.5437 9 6 1.5799 -4.1495 2.4751 10 7 2.1605 -5.1691 1.9166 11 8 1.4706 -6.1601 2.0316 12 6 0.3505 -5.8578 2.6950 13 6 -0.7683 -6.8046 3.0455 14 6 -1.8017 -6.8129 1.9173 15 6 -2.9208 -7.7593 2.2681 16 1 -2.8976 -8.3004 3.2025 17 6 -3.9745 -7.9343 1.3962 18 7 -4.9509 -8.7606 1.7021 19 14 -4.0144 -6.9990 -0.2203 20 1 -3.3355 -7.7983 -1.2716 21 1 -5.4248 -6.7559 -0.6167 22 1 -3.3149 -5.6992 -0.0575 23 7 0.4130 -4.5808 2.9864 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 3.2078 -2.7725 2.5591 34 1 1.7549 -2.2588 3.4497 35 1 -0.3663 -7.8091 3.1773 36 1 -1.2433 -6.4790 3.9709 37 1 -2.2037 -5.8085 1.7853 38 1 -1.3267 -7.1386 0.9918 39 1 -5.6923 -8.8835 1.0889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291045407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:49 Heat of formation + Delta-G solvation = -32.678060 kcal Electronic energy + Delta-G solvation = -22102.277660 eV Core-core repulsion = 18627.360329 eV Total energy + Delta-G solvation = -3474.917331 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.30825 -41.03926 -37.43730 -35.77084 -34.73577 -34.34472 -32.70271 -31.07077 -29.84916 -27.70076 -27.63963 -26.23387 -23.98138 -22.89431 -21.58266 -20.45601 -19.79740 -18.00999 -17.40040 -17.16454 -16.80148 -16.60598 -16.29604 -14.81749 -14.65399 -14.39251 -14.21364 -14.10298 -13.77664 -13.34540 -12.98445 -12.79218 -12.73679 -12.37839 -12.23140 -12.18406 -12.12871 -11.85755 -11.61983 -11.56906 -11.29427 -11.07584 -10.80266 -10.64109 -10.57264 -10.20105 -10.17005 -9.86918 -9.44566 -9.35296 -8.60867 -6.12036 -4.12523 1.38451 2.01907 2.09999 2.73209 3.19568 3.29844 3.37460 3.44093 3.65709 4.14396 4.37980 4.40765 4.45347 4.46692 4.62083 4.89844 4.99242 5.18709 5.22239 5.26536 5.36454 5.40503 5.46198 5.55644 5.57822 5.70831 5.83764 5.94499 6.00397 6.04281 6.07148 6.24003 6.29384 6.45477 7.05260 7.18105 7.60630 7.63290 8.39589 8.40008 8.89867 9.49049 11.00461 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.004183 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.915887 B = 6692.226117 C = 7780.544650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.350 6.350 6 C 0.469 3.531 7 O -0.485 6.485 8 C -0.018 4.018 9 C 0.170 3.830 10 N -0.383 5.383 11 O 0.076 5.924 12 C 0.215 3.785 13 C -0.019 4.019 14 C -0.008 4.008 15 C -0.525 4.525 16 H 0.079 0.921 17 C 0.074 3.926 18 N -0.897 5.897 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.265 1.265 23 N -0.486 5.486 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.021 18.193 -0.783 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.082 3.918 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.268 6.268 6 C 0.309 3.691 7 O -0.371 6.371 8 C -0.056 4.056 9 C -0.103 4.103 10 N -0.092 5.092 11 O 0.017 5.983 12 C -0.005 4.005 13 C -0.058 4.058 14 C -0.046 4.046 15 C -0.563 4.563 16 H 0.097 0.903 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.189 1.189 23 N -0.219 5.219 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.273 18.434 -1.345 24.626 hybrid contribution -0.332 0.359 -1.063 1.170 sum 15.941 18.793 -2.408 24.760 Atomic orbital electron populations 1.22507 0.93746 1.05124 1.02858 1.22219 0.94627 0.92161 0.82778 1.21846 1.02144 0.92470 1.03166 1.22501 1.01612 1.03351 0.96674 1.86496 1.69960 1.24828 1.45507 1.23052 0.77973 0.80884 0.87161 1.90673 1.34010 1.69743 1.42628 1.19340 1.03238 0.85859 0.97203 1.24694 0.90498 0.97022 0.98126 1.74525 1.18780 0.95013 1.20848 1.85279 1.25892 1.30949 1.56131 1.29618 0.89744 0.92302 0.88799 1.20564 0.88190 0.94450 1.02638 1.19624 0.93625 0.98612 0.92787 1.20925 1.03779 1.24770 1.06799 0.90330 1.24931 0.95202 0.94686 0.98060 1.69890 1.10390 1.36156 1.37103 0.86854 0.77435 0.81295 0.84281 1.20055 1.21133 1.18921 1.71883 1.17204 1.08391 1.24425 0.91790 0.90940 0.89642 0.91464 0.90274 0.91365 0.89764 0.90924 0.91958 0.85201 0.84601 0.88377 0.87500 0.95515 0.96244 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 8.37 37.16 0.31 -1.71 16 2 C 0.12 1.21 1.13 -90.62 -0.10 1.10 16 3 C -0.14 -0.99 8.85 37.16 0.33 -0.66 16 4 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 5 O -0.35 -4.02 9.89 -39.27 -0.39 -4.40 16 6 C 0.47 6.32 7.26 36.01 0.26 6.58 16 7 O -0.48 -8.30 11.53 -18.75 -0.22 -8.51 16 8 C -0.02 -0.20 6.44 -29.04 -0.19 -0.39 16 9 C 0.17 2.77 6.71 -156.38 -1.05 1.72 16 10 N -0.38 -6.70 12.16 30.90 0.38 -6.32 16 11 O 0.08 1.38 11.31 18.09 0.20 1.58 16 12 C 0.21 3.92 7.77 -13.05 -0.10 3.82 16 13 C -0.02 -0.36 5.78 -27.88 -0.16 -0.52 16 14 C -0.01 -0.18 4.02 -27.89 -0.11 -0.30 16 15 C -0.52 -14.30 9.66 -34.44 -0.33 -14.64 16 16 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 19 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 23 N -0.49 -8.89 11.55 -9.87 -0.11 -9.00 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.21 5.89 -51.93 -0.31 0.91 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.13 5.89 -51.93 -0.31 0.82 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.14 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 37 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 38 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -32.91 330.86 -5.59 -38.51 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.61 Total: -3.12 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.93 Total: -4.59 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 1.04 Total: -41.58 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.40 Total: -11.33 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.91 -5.59 -38.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291045407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.828 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds