Wall clock time and date at job start Tue Mar 31 2020 06:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38233 * 119.99911 * 2 1 4 4 C 1.38234 * 119.99452 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00519 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00458 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47131 * 19.99396 * 6 5 4 8 8 N 1.46898 * 109.47684 * 139.99792 * 6 5 4 9 9 C 1.46893 * 111.00152 * 205.00165 * 8 6 5 10 10 C 1.50694 * 109.47343 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00167 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00689 * 180.02562 * 10 9 8 13 13 N 1.31524 * 119.99330 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00626 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47354 * 89.99583 * 14 12 10 16 16 H 1.48502 * 109.47177 * 210.00009 * 14 12 10 17 17 H 1.48506 * 109.46980 * 329.99695 * 14 12 10 18 18 C 1.50707 * 109.46939 * 260.00195 * 6 5 4 19 19 C 1.38227 * 119.62059 * 125.01917 * 18 6 5 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 6 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 304.99347 * 18 6 5 24 24 C 1.38232 * 120.00058 * 0.24994 * 5 4 3 25 25 C 1.38240 * 119.99743 * 359.47730 * 24 5 4 26 26 H 1.09002 * 109.47373 * 90.00086 * 1 2 3 27 27 H 1.09001 * 109.47585 * 209.99649 * 1 2 3 28 28 H 1.09002 * 109.47046 * 329.99819 * 1 2 3 29 29 H 1.07992 * 120.00262 * 359.97438 * 3 2 1 30 30 H 1.08006 * 120.00053 * 179.97438 * 4 3 2 31 31 H 1.00905 * 110.99376 * 328.95556 * 8 6 5 32 32 H 1.09001 * 109.47241 * 299.99673 * 9 8 6 33 33 H 1.09005 * 109.47287 * 59.99629 * 9 8 6 34 34 H 0.97000 * 119.99506 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.41915 * 359.97438 * 19 18 6 36 36 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 37 37 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 38 38 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 39 39 H 1.08001 * 120.00692 * 179.72992 * 24 5 4 40 40 H 1.07996 * 120.00497 * 180.27592 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0002 -0.0028 7 1 6.1423 0.9653 0.3488 8 7 6.2691 -1.0615 0.8866 9 6 7.6167 -0.7520 1.3824 10 6 8.0851 -1.8603 2.2897 11 1 7.4453 -2.7095 2.4796 12 6 9.3298 -1.7898 2.8785 13 7 10.1087 -0.7554 2.6478 14 14 9.9106 -3.1639 4.0027 15 1 10.6220 -4.1918 3.2012 16 1 10.8320 -2.6095 5.0268 17 1 8.7393 -3.7828 4.6738 18 6 6.2799 -0.2463 -1.4026 19 6 7.1573 0.6511 -1.9817 20 6 7.6165 0.4125 -3.2678 21 6 7.1662 -0.7196 -3.9300 22 6 6.2891 -1.5718 -3.2866 23 7 5.8766 -1.3155 -2.0604 24 6 3.5805 -1.1972 -0.0074 25 6 2.1982 -1.1972 -0.0011 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 -0.0004 30 1 4.1206 2.1323 -0.0010 31 1 5.6292 -1.2167 1.6513 32 1 8.3014 -0.6584 0.5394 33 1 7.5933 0.1860 1.9372 34 1 10.9842 -0.7056 3.0623 35 1 7.4839 1.5251 -1.4378 36 1 8.3055 1.0944 -3.7442 37 1 7.5003 -0.9349 -4.9342 38 1 5.9369 -2.4577 -3.7940 39 1 4.1205 -2.1326 -0.0126 40 1 1.6581 -2.1325 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298526348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:43 Heat of formation + Delta-G solvation = 54.728390 kcal Electronic energy + Delta-G solvation = -21207.844027 eV Core-core repulsion = 18179.858938 eV Total energy + Delta-G solvation = -3027.985089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.08842 -38.96809 -35.86203 -33.17140 -32.03341 -31.86329 -30.87005 -30.59069 -28.06183 -25.97538 -24.35868 -23.24189 -22.39983 -22.06291 -21.09644 -19.99838 -16.80319 -16.61243 -16.01182 -15.67121 -15.06220 -15.04811 -14.78215 -14.53179 -14.02520 -13.79733 -13.45021 -13.18997 -13.06431 -12.98018 -12.70798 -12.25890 -12.13344 -11.99972 -11.80061 -11.33211 -11.23263 -10.86613 -10.77606 -10.60534 -10.56200 -9.95963 -9.51826 -9.20783 -9.00296 -8.65295 -8.61955 -8.47697 -8.23032 -7.34684 -6.02960 -4.04269 1.40311 1.61647 1.65716 1.71747 3.33169 3.38721 3.42836 3.99334 4.16522 4.43737 4.71259 4.83267 4.97506 5.06132 5.10727 5.22892 5.28960 5.33465 5.36882 5.38477 5.49394 5.56990 5.61784 5.76676 5.81662 5.90075 5.92403 6.02475 6.06447 6.27706 6.38675 6.43836 6.48404 6.66219 6.82701 6.96722 7.02909 7.23106 7.30147 7.38853 7.78014 8.10727 8.36630 8.46823 8.58250 9.04441 9.60358 11.08258 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.005275 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.001703 B = 5306.500039 C = 6741.403870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.112 4.112 5 C -0.081 4.081 6 C 0.172 3.828 7 H 0.057 0.943 8 N -0.669 5.669 9 C 0.195 3.805 10 C -0.511 4.511 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.899 3.101 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.166 3.834 19 C -0.167 4.167 20 C -0.078 4.078 21 C -0.187 4.187 22 C 0.095 3.905 23 N -0.452 5.452 24 C -0.068 4.068 25 C -0.129 4.129 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.337 0.663 32 H 0.027 0.973 33 H -0.012 1.012 34 H 0.261 0.739 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.656 4.089 -10.460 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.131 4.131 5 C -0.081 4.081 6 C 0.061 3.939 7 H 0.075 0.925 8 N -0.301 5.301 9 C 0.068 3.932 10 C -0.550 4.550 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.198 1.198 18 C 0.027 3.973 19 C -0.187 4.187 20 C -0.104 4.104 21 C -0.207 4.207 22 C -0.063 4.063 23 N -0.161 5.161 24 C -0.086 4.086 25 C -0.147 4.147 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.155 0.845 32 H 0.045 0.955 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.818 3.187 -10.495 17.642 hybrid contribution 1.143 0.643 0.709 1.491 sum -12.675 3.830 -9.786 16.465 Atomic orbital electron populations 1.20749 0.91767 1.02374 1.01859 1.19861 0.95632 0.93430 1.00535 1.20844 0.93930 0.97196 1.02818 1.21016 0.94188 0.97476 1.00401 1.19832 0.94544 0.93397 1.00367 1.19253 0.89525 0.95268 0.89843 0.92480 1.60643 1.06035 1.40869 1.22526 1.19621 0.83809 0.95270 0.94460 1.21148 1.01147 1.05845 1.26828 0.91895 1.24971 0.96624 0.96021 0.96883 1.69966 1.09951 1.29407 1.44468 0.86483 0.78596 0.81969 0.80275 1.20667 1.21319 1.19795 1.21063 0.91999 0.89140 0.95068 1.21976 0.99114 1.01500 0.96148 1.21454 0.97664 0.96843 0.94403 1.22029 1.00614 0.96681 1.01389 1.22721 0.94202 0.98327 0.91004 1.67433 1.23695 1.17741 1.07229 1.21145 0.93226 0.98807 0.95430 1.21046 0.94423 0.97130 1.02118 0.91624 0.91778 0.91938 0.86656 0.86505 0.84455 0.95502 0.99445 0.92962 0.85216 0.85354 0.85504 0.83370 0.84395 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.09 -1.20 5.88 -104.62 -0.62 -1.82 16 3 C -0.13 -1.69 9.70 -39.58 -0.38 -2.08 16 4 C -0.11 -1.64 9.67 -39.59 -0.38 -2.02 16 5 C -0.08 -1.33 4.62 -104.63 -0.48 -1.82 16 6 C 0.17 3.21 2.54 -70.01 -0.18 3.03 16 7 H 0.06 1.06 7.39 -51.93 -0.38 0.68 16 8 N -0.67 -14.60 5.68 -110.46 -0.63 -15.23 16 9 C 0.19 5.12 5.23 -4.98 -0.03 5.09 16 10 C -0.51 -14.59 9.32 -34.44 -0.32 -14.91 16 11 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 14 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.17 3.06 5.51 -82.58 -0.45 2.60 16 19 C -0.17 -2.76 9.71 -39.44 -0.38 -3.14 16 20 C -0.08 -1.09 10.18 -39.28 -0.40 -1.49 16 21 C -0.19 -2.51 10.11 -39.44 -0.40 -2.91 16 22 C 0.10 1.44 11.18 -17.55 -0.20 1.24 16 23 N -0.45 -8.21 9.55 -9.47 -0.09 -8.30 16 24 C -0.07 -1.09 8.47 -39.58 -0.34 -1.42 16 25 C -0.13 -1.79 9.70 -39.58 -0.38 -2.17 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.12 1.52 8.04 -52.48 -0.42 1.10 16 31 H 0.34 7.13 7.99 -39.29 -0.31 6.82 16 32 H 0.03 0.77 8.00 -51.93 -0.42 0.35 16 33 H -0.01 -0.34 8.06 -51.93 -0.42 -0.75 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.13 1.97 7.95 -52.49 -0.42 1.55 16 36 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.14 2.40 7.73 -52.49 -0.41 1.99 16 40 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -31.89 342.54 -10.22 -42.11 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.70 Total: 6.50 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -4.68 Total: -20.99 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.02 Total: -49.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.89 -10.22 -42.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298526348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.837 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds