Wall clock time and date at job start Tue Mar 31 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37909 * 119.58314 * 2 1 4 4 C 1.39456 * 119.07056 * 179.97438 * 3 2 1 5 5 N 1.39163 * 120.86604 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99952 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47017 * 34.99559 * 6 5 4 8 8 C 1.52993 * 109.47256 * 154.99409 * 6 5 4 9 9 C 1.50700 * 109.47483 * 295.00228 * 8 6 5 10 10 H 1.07994 * 119.99930 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99820 * 180.02562 * 9 8 6 12 12 N 1.31507 * 120.00311 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99694 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47183 * 90.00001 * 13 11 9 15 15 H 1.48502 * 109.47271 * 209.99838 * 13 11 9 16 16 H 1.48508 * 109.47196 * 329.99958 * 13 11 9 17 17 C 1.50702 * 109.46911 * 274.99857 * 6 5 4 18 18 C 1.38231 * 119.99955 * 319.72262 * 17 6 5 19 19 C 1.38238 * 120.00344 * 179.81002 * 18 17 6 20 20 C 1.38240 * 119.99190 * 0.39972 * 19 18 17 21 21 C 1.38225 * 120.00343 * 359.85847 * 20 19 18 22 22 C 1.38232 * 120.00140 * 140.00074 * 17 6 5 23 23 C 1.39496 * 118.26456 * 0.02562 * 4 3 2 24 24 C 1.37871 * 119.07302 * 359.97438 * 23 4 3 25 25 N 1.31984 * 119.57596 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47098 * 270.02033 * 1 2 3 27 27 H 1.08999 * 109.46528 * 30.01961 * 1 2 3 28 28 H 1.08998 * 109.47237 * 150.01326 * 1 2 3 29 29 H 1.08005 * 120.46733 * 0.02562 * 3 2 1 30 30 H 0.96996 * 120.00564 * 359.97438 * 5 4 3 31 31 H 1.09009 * 109.46847 * 55.00125 * 8 6 5 32 32 H 1.09001 * 109.46940 * 174.99729 * 8 6 5 33 33 H 0.96999 * 120.00165 * 180.02562 * 12 11 9 34 34 H 1.08005 * 120.00226 * 0.02562 * 18 17 6 35 35 H 1.07997 * 120.00152 * 180.23250 * 19 18 17 36 36 H 1.08006 * 119.99176 * 179.82853 * 20 19 18 37 37 H 1.08005 * 120.00121 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00010 * 359.97437 * 22 17 6 39 39 H 1.08005 * 120.46388 * 179.97438 * 23 4 3 40 40 H 1.08001 * 119.58235 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1993 0.0000 4 6 3.5824 1.1868 0.0005 5 7 4.3070 2.3749 0.0011 6 6 5.7716 2.3397 0.0011 7 1 6.1146 1.4896 -0.5887 8 6 6.3130 3.6345 -0.6080 9 6 5.9160 3.7112 -2.0598 10 1 5.3360 2.9156 -2.5037 11 6 6.2943 4.7964 -2.8215 12 7 7.0009 5.7649 -2.2811 13 14 5.8028 4.8910 -4.6212 14 1 4.4919 5.5783 -4.7409 15 1 6.8311 5.6516 -5.3759 16 1 5.6947 3.5184 -5.1777 17 6 6.2708 2.2032 1.4165 18 6 5.6568 2.9054 2.4366 19 6 6.1121 2.7772 3.7356 20 6 7.1867 1.9531 4.0130 21 6 7.8041 1.2550 2.9921 22 6 7.3463 1.3802 1.6938 23 6 4.2319 -0.0477 0.0005 24 6 3.4775 -1.2017 0.0005 25 7 2.1585 -1.1479 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3632 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6487 2.1351 0.0004 30 1 3.8424 3.2264 0.0007 31 1 5.8987 4.4889 -0.0725 32 1 7.3999 3.6473 -0.5273 33 1 7.2667 6.5286 -2.8169 34 1 4.8190 3.5515 2.2194 35 1 5.6299 3.3229 4.5331 36 1 7.5442 1.8551 5.0274 37 1 8.6440 0.6115 3.2088 38 1 7.8286 0.8347 0.8961 39 1 5.3108 -0.0988 0.0005 40 1 3.9719 -2.1619 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302525301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:53 Heat of formation + Delta-G solvation = 46.215117 kcal Electronic energy + Delta-G solvation = -21348.781951 eV Core-core repulsion = 18320.427699 eV Total energy + Delta-G solvation = -3028.354252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.97171 -38.98025 -36.34280 -33.33351 -32.33283 -31.98887 -30.62313 -29.52947 -28.27835 -27.32955 -24.85893 -23.07332 -22.24518 -22.02719 -21.27650 -19.73572 -17.11281 -16.79672 -16.25609 -16.05146 -15.27780 -14.90515 -14.73910 -14.59098 -14.16825 -13.73856 -13.57159 -13.29090 -13.04945 -12.97658 -12.61910 -12.29091 -12.18188 -12.12393 -11.53833 -11.30898 -11.10293 -11.07002 -10.86095 -10.79636 -10.52176 -10.23415 -9.74798 -9.30124 -9.06348 -8.62666 -8.58973 -8.51910 -8.29688 -7.31369 -6.14640 -4.18453 1.56820 1.67315 1.70651 2.01343 3.23640 3.31078 3.34806 3.82998 4.16890 4.26301 4.35386 4.68770 5.07341 5.17086 5.17705 5.22115 5.26482 5.41454 5.43409 5.56386 5.66011 5.72175 5.77605 5.82653 5.86475 5.94603 6.03683 6.15515 6.25000 6.31977 6.42038 6.44986 6.50937 6.74501 6.76559 6.93205 7.06235 7.29529 7.35347 7.41347 7.80036 7.83329 8.18017 8.19088 8.51191 8.87444 9.47135 10.95834 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.009681 B = 0.006900 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.580982 B = 4057.221625 C = 6236.310081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.158 3.842 3 C -0.259 4.259 4 C 0.271 3.729 5 N -0.701 5.701 6 C 0.186 3.814 7 H 0.080 0.920 8 C 0.025 3.975 9 C -0.521 4.521 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.079 4.079 18 C -0.102 4.102 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.257 4.257 24 C 0.136 3.864 25 N -0.542 5.542 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.404 0.596 31 H 0.024 0.976 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 -8.442 9.212 13.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.021 3.979 3 C -0.285 4.285 4 C 0.155 3.845 5 N -0.325 5.325 6 C 0.081 3.919 7 H 0.098 0.902 8 C -0.013 4.013 9 C -0.559 4.559 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.080 4.080 18 C -0.120 4.120 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.134 4.134 23 C -0.283 4.283 24 C -0.019 4.019 25 N -0.257 5.257 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.143 0.857 30 H 0.240 0.760 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.015 -9.021 9.151 13.793 hybrid contribution 0.328 1.433 -0.991 1.773 sum -4.687 -7.587 8.160 12.088 Atomic orbital electron populations 1.20647 0.89724 1.02888 1.02459 1.20821 0.96190 0.88031 0.92837 1.21285 0.92622 0.99420 1.15138 1.18120 0.90809 0.87497 0.88099 1.44850 1.05720 1.04897 1.76992 1.20294 0.78715 1.02981 0.89877 0.90193 1.19370 0.97069 0.89257 0.95574 1.21116 1.34497 1.05627 0.94710 0.92353 1.24986 0.94942 0.95677 0.98514 1.69950 1.37261 1.09338 1.36484 0.86589 0.78244 0.78202 0.84980 1.20646 1.21168 1.19837 1.20659 0.95397 0.95242 0.96748 1.20908 0.99789 0.98946 0.92350 1.21076 0.97307 0.99220 0.96569 1.21017 0.97054 0.98268 0.98777 1.21035 0.99897 0.99997 0.93050 1.21010 0.96848 0.98967 0.96557 1.21579 1.01124 0.91991 1.13565 1.22277 0.89296 0.97409 0.92942 1.67488 1.09783 1.28857 1.19579 0.90949 0.91138 0.90919 0.85679 0.76022 0.95784 0.94764 0.92813 0.86568 0.86700 0.86775 0.86541 0.86205 0.85384 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.17 36.01 0.37 -0.78 16 2 C 0.16 2.40 6.78 -82.65 -0.56 1.84 16 3 C -0.26 -4.05 9.62 -39.25 -0.38 -4.42 16 4 C 0.27 4.58 6.67 -83.61 -0.56 4.02 16 5 N -0.70 -12.25 4.20 -53.12 -0.22 -12.48 16 6 C 0.19 3.49 1.83 -69.08 -0.13 3.36 16 7 H 0.08 1.53 6.41 -51.93 -0.33 1.20 16 8 C 0.02 0.57 4.49 -27.89 -0.13 0.45 16 9 C -0.52 -13.57 8.84 -34.44 -0.30 -13.87 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 13 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 17 C -0.08 -1.34 4.87 -104.63 -0.51 -1.85 16 18 C -0.10 -1.64 9.32 -39.58 -0.37 -2.01 16 19 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 20 C -0.13 -1.78 10.05 -39.59 -0.40 -2.18 16 21 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 22 C -0.12 -1.78 9.67 -39.59 -0.38 -2.16 16 23 C -0.26 -4.18 9.23 -39.25 -0.36 -4.54 16 24 C 0.14 2.10 11.17 -17.61 -0.20 1.90 16 25 N -0.54 -8.87 10.27 -9.57 -0.10 -8.97 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.40 6.98 8.63 -40.82 -0.35 6.63 16 31 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.12 1.84 7.73 -52.48 -0.41 1.43 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 37 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 38 H 0.12 1.70 8.04 -52.49 -0.42 1.27 16 39 H 0.13 2.01 6.37 -52.48 -0.33 1.67 16 40 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -29.47 341.04 -9.88 -39.35 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.61 Total: 8.58 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -4.80 Total: -22.93 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.41 Total: -46.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.47 -9.88 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302525301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.563 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds