Wall clock time and date at job start Tue Mar 31 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37916 * 119.57760 * 2 1 4 4 C 1.39459 * 119.06304 * 180.27456 * 3 2 1 5 5 N 1.39166 * 120.86324 * 179.70886 * 4 3 2 6 6 C 1.46504 * 119.99625 * 179.72336 * 5 4 3 7 7 H 1.09003 * 109.47297 * 324.99521 * 6 5 4 8 8 C 1.53001 * 109.46817 * 204.99883 * 6 5 4 9 9 C 1.50695 * 109.47420 * 64.99707 * 8 6 5 10 10 H 1.08007 * 119.99727 * 0.02562 * 9 8 6 11 11 C 1.37876 * 120.00478 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99649 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00185 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47236 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46579 * 120.00258 * 13 11 9 16 16 H 1.48496 * 109.47169 * 239.99673 * 13 11 9 17 17 C 1.50700 * 109.47321 * 84.99652 * 6 5 4 18 18 C 1.38231 * 119.99825 * 39.86585 * 17 6 5 19 19 C 1.38243 * 120.00070 * 180.02562 * 18 17 6 20 20 C 1.38235 * 119.99602 * 0.07188 * 19 18 17 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00292 * 219.99723 * 17 6 5 23 23 C 1.39501 * 118.26663 * 359.43616 * 4 3 2 24 24 C 1.37865 * 119.06870 * 0.27510 * 23 4 3 25 25 N 1.31983 * 119.57685 * 179.69946 * 2 1 3 26 26 H 1.08997 * 109.47143 * 270.30439 * 1 2 3 27 27 H 1.09000 * 109.47340 * 30.30142 * 1 2 3 28 28 H 1.09003 * 109.47081 * 150.30122 * 1 2 3 29 29 H 1.08003 * 120.47091 * 359.97438 * 3 2 1 30 30 H 0.96990 * 120.00075 * 359.71847 * 5 4 3 31 31 H 1.08994 * 109.46962 * 185.00107 * 8 6 5 32 32 H 1.09004 * 109.46975 * 304.99918 * 8 6 5 33 33 H 0.96994 * 120.00198 * 180.02562 * 12 11 9 34 34 H 1.08001 * 120.00367 * 0.10906 * 18 17 6 35 35 H 1.08000 * 119.99728 * 180.34119 * 19 18 17 36 36 H 1.08000 * 119.99297 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.00350 * 179.97438 * 21 20 19 38 38 H 1.08007 * 119.99474 * 359.97438 * 22 17 6 39 39 H 1.07998 * 120.46134 * 180.29303 * 23 4 3 40 40 H 1.08004 * 119.57838 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1994 0.0000 4 6 3.5823 1.1869 -0.0058 5 7 4.3069 2.3751 -0.0121 6 6 5.7715 2.3398 -0.0121 7 1 6.1146 1.4926 0.5819 8 6 6.3128 3.6377 0.5907 9 6 5.9160 3.7214 2.0421 10 1 5.3360 2.9279 2.4899 11 6 6.2941 4.8103 2.7986 12 7 7.0008 5.7762 2.2533 13 14 5.8027 4.9136 4.5978 14 1 5.0170 3.7087 4.9663 15 1 7.0232 4.9852 5.4408 16 1 4.9780 6.1290 4.8167 17 6 6.2706 2.1964 -1.4268 18 6 5.6512 2.8870 -2.4515 19 6 6.1087 2.7551 -3.7494 20 6 7.1847 1.9314 -4.0225 21 6 7.8035 1.2400 -2.9979 22 6 7.3461 1.3721 -1.7001 23 6 4.2319 -0.0476 0.0006 24 6 3.4775 -1.2015 0.0067 25 7 2.1585 -1.1478 0.0060 26 1 -0.3633 0.0055 1.0276 27 1 -0.3634 0.8873 -0.5185 28 1 -0.3633 -0.8927 -0.5092 29 1 1.6486 2.1352 -0.0004 30 1 3.8423 3.2264 -0.0166 31 1 7.3997 3.6501 0.5099 32 1 5.8986 4.4894 0.0511 33 1 7.2671 6.5421 2.7855 34 1 4.8107 3.5308 -2.2381 35 1 5.6282 3.2990 -4.5492 36 1 7.5418 1.8280 -5.0365 37 1 8.6439 0.5961 -3.2113 38 1 7.8290 0.8312 -0.8996 39 1 5.3107 -0.0986 0.0012 40 1 3.9719 -2.1617 0.0121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302525302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:56 Heat of formation + Delta-G solvation = 46.215561 kcal Electronic energy + Delta-G solvation = -21349.773401 eV Core-core repulsion = 18321.419168 eV Total energy + Delta-G solvation = -3028.354233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.97158 -38.97959 -36.34280 -33.33368 -32.33239 -31.98838 -30.62268 -29.52940 -28.27970 -27.32910 -24.86033 -23.07265 -22.24455 -22.02919 -21.27561 -19.73606 -17.11315 -16.79654 -16.25902 -16.05238 -15.27684 -14.90783 -14.73909 -14.58936 -14.16379 -13.73791 -13.57043 -13.28476 -13.05385 -12.97914 -12.62198 -12.28708 -12.18348 -12.12925 -11.54647 -11.30275 -11.10248 -11.06518 -10.86225 -10.80754 -10.50858 -10.23894 -9.75027 -9.28556 -9.06316 -8.62683 -8.58884 -8.52387 -8.29668 -7.31316 -6.14881 -4.18598 1.56916 1.67353 1.70628 2.01399 3.22545 3.31331 3.35843 3.83017 4.16888 4.26443 4.35355 4.68707 5.07352 5.17117 5.17711 5.21969 5.26503 5.41393 5.43309 5.56322 5.66176 5.72827 5.77686 5.82570 5.86423 5.94515 6.03501 6.15529 6.24980 6.31949 6.42038 6.44977 6.50942 6.74506 6.76579 6.93188 7.06266 7.29539 7.35315 7.41441 7.80036 7.83332 8.18027 8.19026 8.51242 8.87595 9.47077 10.95662 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.006899 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.653984 B = 4057.507380 C = 6235.981686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.158 3.842 3 C -0.259 4.259 4 C 0.271 3.729 5 N -0.701 5.701 6 C 0.186 3.814 7 H 0.080 0.920 8 C 0.024 3.976 9 C -0.520 4.520 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.079 4.079 18 C -0.102 4.102 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.257 4.257 24 C 0.136 3.864 25 N -0.542 5.542 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.125 0.875 30 H 0.404 0.596 31 H 0.034 0.966 32 H 0.024 0.976 33 H 0.262 0.738 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 -8.507 -9.158 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.021 3.979 3 C -0.285 4.285 4 C 0.155 3.845 5 N -0.325 5.325 6 C 0.081 3.919 7 H 0.098 0.902 8 C -0.013 4.013 9 C -0.559 4.559 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.080 4.080 18 C -0.120 4.120 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.134 4.134 23 C -0.283 4.283 24 C -0.019 4.019 25 N -0.257 5.257 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.143 0.857 30 H 0.240 0.760 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.035 -9.087 -9.096 13.808 hybrid contribution 0.346 1.447 1.009 1.797 sum -4.690 -7.640 -8.087 12.074 Atomic orbital electron populations 1.20646 0.89724 1.02751 1.02589 1.20823 0.96191 0.88034 0.92829 1.21286 0.92623 0.99419 1.15143 1.18123 0.90810 0.87496 0.88092 1.44847 1.05719 1.04895 1.76992 1.20294 0.78713 1.02967 0.89891 0.90191 1.19374 0.97074 0.89219 0.95641 1.21155 1.34417 1.05515 0.94772 0.92299 1.24990 0.94971 0.95685 0.98508 1.69963 1.37357 1.09342 1.36382 0.86538 0.78376 0.78054 0.85101 1.19704 1.20935 1.20981 1.20660 0.95379 0.95267 0.96738 1.20909 0.99754 0.99020 0.92320 1.21077 0.97293 0.99197 0.96600 1.21016 0.97034 0.98311 0.98757 1.21036 0.99887 1.00021 0.93030 1.21011 0.96886 0.98909 0.96580 1.21578 1.01121 0.91991 1.13573 1.22275 0.89299 0.97409 0.92941 1.67488 1.09780 1.28852 1.19588 0.90846 0.91206 0.90959 0.85676 0.76024 0.94762 0.95774 0.92871 0.86569 0.86699 0.86774 0.86541 0.86206 0.85385 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.17 36.01 0.37 -0.78 16 2 C 0.16 2.41 6.78 -82.64 -0.56 1.85 16 3 C -0.26 -4.05 9.63 -39.24 -0.38 -4.43 16 4 C 0.27 4.58 6.67 -83.61 -0.56 4.02 16 5 N -0.70 -12.26 4.19 -53.12 -0.22 -12.48 16 6 C 0.19 3.49 1.84 -69.08 -0.13 3.36 16 7 H 0.08 1.53 6.41 -51.93 -0.33 1.20 16 8 C 0.02 0.56 4.49 -27.88 -0.13 0.44 16 9 C -0.52 -13.54 8.84 -34.44 -0.30 -13.85 16 10 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 13 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.08 -1.34 4.87 -104.63 -0.51 -1.85 16 18 C -0.10 -1.65 9.32 -39.58 -0.37 -2.01 16 19 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 20 C -0.13 -1.78 10.05 -39.59 -0.40 -2.18 16 21 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 22 C -0.12 -1.78 9.67 -39.58 -0.38 -2.17 16 23 C -0.26 -4.18 9.23 -39.25 -0.36 -4.54 16 24 C 0.14 2.10 11.17 -17.61 -0.20 1.90 16 25 N -0.54 -8.87 10.27 -9.57 -0.10 -8.97 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.13 1.74 8.06 -52.48 -0.42 1.31 16 30 H 0.40 6.98 8.63 -40.82 -0.35 6.63 16 31 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.12 1.84 7.72 -52.49 -0.40 1.43 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.69 8.04 -52.48 -0.42 1.27 16 39 H 0.13 2.01 6.37 -52.49 -0.33 1.67 16 40 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -29.52 341.02 -9.88 -39.40 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.61 Total: 8.55 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -4.80 Total: -22.92 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.42 Total: -46.12 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.52 -9.88 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302525302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.613 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds