Wall clock time and date at job start Tue Mar 31 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46909 * 2 1 4 4 N 1.46499 * 109.47185 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99838 * 263.43204 * 4 3 2 6 6 H 1.08003 * 120.00009 * 188.12050 * 5 4 3 7 7 C 1.38950 * 120.00429 * 8.11911 * 5 4 3 8 8 N 1.31413 * 119.99666 * 25.94923 * 7 5 4 9 9 Si 1.86796 * 120.00329 * 205.94625 * 7 5 4 10 10 H 1.48493 * 109.47127 * 84.98684 * 9 7 5 11 11 H 1.48506 * 109.46937 * 204.98915 * 9 7 5 12 12 H 1.48499 * 109.47255 * 324.98414 * 9 7 5 13 13 C 1.34776 * 120.00145 * 83.43724 * 4 3 2 14 14 O 1.21287 * 119.99920 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99553 * 359.97438 * 13 4 3 16 16 O 1.42897 * 109.46635 * 180.02562 * 15 13 4 17 17 C 1.42904 * 113.99944 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46959 * 179.97438 * 17 16 15 19 19 C 1.35448 * 126.77706 * 90.00524 * 18 17 16 20 20 C 1.41377 * 103.98809 * 179.97438 * 19 18 17 21 21 C 1.50705 * 126.80463 * 180.02562 * 20 19 18 22 22 N 1.30177 * 106.39230 * 359.97438 * 20 19 18 23 23 O 1.20921 * 111.60704 * 359.72206 * 22 20 19 24 24 H 1.09003 * 109.46755 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47427 * 299.99302 * 1 2 3 26 26 H 1.08998 * 109.47232 * 60.00162 * 1 2 3 27 27 H 1.08998 * 109.47427 * 240.00698 * 2 1 3 28 28 H 1.08998 * 109.47232 * 119.99837 * 2 1 3 29 29 H 1.09009 * 109.47000 * 60.00166 * 3 2 1 30 30 H 1.08999 * 109.47723 * 300.00268 * 3 2 1 31 31 H 0.97004 * 119.99976 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47233 * 60.00221 * 15 13 4 33 33 H 1.08997 * 109.46913 * 300.00111 * 15 13 4 34 34 H 1.08999 * 109.47023 * 299.99747 * 17 16 15 35 35 H 1.08994 * 109.47013 * 59.99939 * 17 16 15 36 36 H 1.08009 * 128.00721 * 359.96925 * 19 18 17 37 37 H 1.08994 * 109.46773 * 89.99592 * 21 20 19 38 38 H 1.09002 * 109.46819 * 209.99474 * 21 20 19 39 39 H 1.09000 * 109.46526 * 329.99486 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1909 1.5783 1.1786 6 1 5.2628 1.7101 1.1678 7 6 3.5071 1.5462 2.3878 8 7 2.3627 0.9066 2.4787 9 14 4.2146 2.4120 3.8842 10 1 3.8189 3.8431 3.8611 11 1 3.6916 1.7736 5.1188 12 1 5.6958 2.3075 3.8623 13 6 4.1784 1.3094 -1.1604 14 8 5.3912 1.3090 -1.1609 15 6 3.4242 1.1598 -2.4566 16 8 4.3524 1.0354 -3.5360 17 6 3.7373 0.8881 -4.8174 18 6 4.8036 0.7668 -5.8754 19 6 5.3775 -0.3763 -6.3210 20 6 6.2993 0.0627 -7.2990 21 6 7.2184 -0.7998 -8.1250 22 7 6.1959 1.3595 -7.3453 23 8 5.3664 1.7682 -6.5661 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 1.8852 0.8845 3.3228 32 1 2.7972 2.0371 -2.6155 33 1 2.7980 0.2688 -2.4118 34 1 3.1170 -0.0081 -4.8218 35 1 3.1174 1.7602 -5.0252 36 1 5.1774 -1.3889 -6.0028 37 1 6.7134 -1.0906 -9.0461 38 1 8.1218 -0.2400 -8.3671 39 1 7.4848 -1.6926 -7.5592 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337872831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:21 Heat of formation + Delta-G solvation = -27.612376 kcal Electronic energy + Delta-G solvation = -22036.113848 eV Core-core repulsion = 18561.416181 eV Total energy + Delta-G solvation = -3474.697667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.94323 -40.62904 -38.73644 -37.10300 -35.77765 -34.23525 -33.59900 -33.13088 -29.73056 -29.57985 -27.67286 -26.93194 -25.73094 -24.09835 -22.35028 -21.33047 -20.91951 -18.94869 -18.76432 -18.50241 -17.89837 -17.14770 -17.12630 -16.62552 -15.92693 -15.69462 -15.45388 -15.27555 -14.74678 -14.38788 -14.19363 -14.02123 -13.85494 -13.69235 -13.49012 -13.24808 -13.05362 -12.77120 -12.63162 -12.48507 -12.18864 -12.12283 -12.04811 -11.90986 -11.35477 -10.99887 -10.78975 -10.66469 -10.61600 -10.25027 -9.68081 -8.33302 -5.82492 0.27989 1.18773 1.36700 1.44495 1.53630 1.94697 1.99657 2.26518 2.66222 3.04745 3.24743 3.32328 3.57597 3.92539 4.00204 4.12769 4.18748 4.27712 4.35348 4.43840 4.48753 4.58204 4.60193 4.69043 4.75247 4.88115 4.88236 4.92016 5.13122 5.23020 5.27940 5.42533 5.49460 5.66820 5.89353 6.00723 6.17300 6.57357 7.19953 7.21176 7.49318 8.06984 8.63851 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025746 B = 0.003546 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.285981 B = 7895.357873 C = 8592.950065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 C 0.121 3.879 4 N -0.446 5.446 5 C -0.356 4.356 6 H 0.066 0.934 7 C 0.013 3.987 8 N -0.857 5.857 9 Si 0.975 3.025 10 H -0.269 1.269 11 H -0.271 1.271 12 H -0.284 1.284 13 C 0.420 3.580 14 O -0.636 6.636 15 C 0.072 3.928 16 O -0.395 6.395 17 C 0.134 3.866 18 C -0.037 4.037 19 C -0.211 4.211 20 C 0.008 3.992 21 C -0.074 4.074 22 N -0.396 5.396 23 O 0.080 5.920 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.275 0.725 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.200 0.800 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.363 -4.497 -14.377 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C -0.002 4.002 4 N -0.165 5.165 5 C -0.483 4.483 6 H 0.084 0.916 7 C -0.191 4.191 8 N -0.494 5.494 9 Si 0.800 3.200 10 H -0.195 1.195 11 H -0.196 1.196 12 H -0.209 1.209 13 C 0.210 3.790 14 O -0.524 6.524 15 C -0.007 4.007 16 O -0.314 6.314 17 C 0.058 3.942 18 C -0.100 4.100 19 C -0.232 4.232 20 C -0.150 4.150 21 C -0.131 4.131 22 N -0.105 5.105 23 O 0.016 5.984 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.218 0.782 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.168 -3.580 -14.887 16.160 hybrid contribution 0.229 -0.212 1.358 1.393 sum -4.939 -3.792 -13.529 14.893 Atomic orbital electron populations 1.21525 0.93989 1.01514 1.01597 1.21774 0.96706 0.96467 1.00926 1.21727 0.78335 0.98377 1.01718 1.43972 1.06849 1.60949 1.04735 1.19495 0.93366 1.51346 0.84104 0.91604 1.25734 0.96951 0.96158 1.00274 1.70178 1.16613 1.35045 1.27546 0.85239 0.78147 0.79055 0.77585 1.19473 1.19551 1.20935 1.20649 0.87924 0.84093 0.86345 1.90497 1.16589 1.57715 1.87602 1.22184 0.90719 1.03682 0.84098 1.88042 1.33891 1.94805 1.14647 1.21013 0.89440 1.05475 0.78288 1.24479 1.00359 0.87400 0.97804 1.22926 0.98959 1.01648 0.99634 1.24343 1.00405 0.90624 0.99660 1.20349 0.96385 0.97577 0.98809 1.73826 1.08621 1.15337 1.12683 1.84769 1.39454 1.35028 1.39134 0.92469 0.93593 0.91536 0.93972 0.91980 0.89810 0.91386 0.91501 0.88475 0.88232 0.86022 0.88477 0.78242 0.88139 0.90657 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.91 71.98 0.71 -2.83 16 2 C -0.12 -4.38 5.67 30.59 0.17 -4.20 16 3 C 0.12 4.88 4.35 86.38 0.38 5.26 16 4 N -0.45 -22.51 2.64 -635.53 -1.68 -24.19 16 5 C -0.36 -20.14 9.42 84.04 0.79 -19.35 16 6 H 0.07 4.15 7.31 -2.91 -0.02 4.13 16 7 C 0.01 0.67 4.88 84.93 0.41 1.08 16 8 N -0.86 -41.49 8.70 21.66 0.19 -41.30 16 9 Si 0.98 41.47 29.62 68.60 2.03 43.50 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.42 21.12 7.65 87.66 0.67 21.79 16 14 O -0.64 -38.99 16.09 15.98 0.26 -38.74 16 15 C 0.07 2.51 5.03 71.24 0.36 2.87 16 16 O -0.39 -14.29 9.86 -129.94 -1.28 -15.57 16 17 C 0.13 3.13 6.50 71.24 0.46 3.60 16 18 C -0.04 -1.00 7.12 25.04 0.18 -0.82 16 19 C -0.21 -4.94 11.06 22.40 0.25 -4.69 16 20 C 0.01 0.20 7.33 43.58 0.32 0.52 16 21 C -0.07 -1.15 10.48 71.24 0.75 -0.40 16 22 N -0.40 -12.16 12.07 -49.55 -0.60 -12.75 16 23 O 0.08 2.49 11.20 71.63 0.80 3.29 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.41 6.44 -2.39 -0.02 1.40 16 28 H 0.06 2.78 6.40 -2.39 -0.02 2.76 16 29 H 0.08 3.73 5.83 -2.38 -0.01 3.71 16 30 H 0.07 2.22 6.72 -2.39 -0.02 2.20 16 31 H 0.27 12.45 8.31 -92.71 -0.77 11.68 16 32 H 0.10 2.74 7.42 -2.39 -0.02 2.72 16 33 H 0.10 2.85 6.39 -2.39 -0.02 2.84 16 34 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.20 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -75.56 328.89 6.23 -69.33 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 1.06 Total: 13.59 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.45 Total: 2.83 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -2.09 Total: -78.24 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.22 Total: -51.01 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -75.56 6.23 -69.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337872831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.716 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds