Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46878 * 2 1 4 4 N 1.46492 * 109.47053 * 179.97438 * 3 2 1 5 5 C 1.37103 * 120.00097 * 264.77069 * 4 3 2 6 6 H 1.07998 * 120.00198 * 138.85959 * 5 4 3 7 7 C 1.38947 * 119.99621 * 318.85318 * 5 4 3 8 8 N 1.31415 * 120.00125 * 341.83076 * 7 5 4 9 9 Si 1.86801 * 119.99708 * 161.82628 * 7 5 4 10 10 H 1.48496 * 109.47111 * 90.00527 * 9 7 5 11 11 H 1.48505 * 109.46975 * 209.99931 * 9 7 5 12 12 H 1.48494 * 109.47251 * 330.00015 * 9 7 5 13 13 C 1.34774 * 120.00235 * 84.76889 * 4 3 2 14 14 O 1.21291 * 120.00659 * 180.02562 * 13 4 3 15 15 C 1.50708 * 119.99788 * 359.97438 * 13 4 3 16 16 O 1.42905 * 109.47019 * 179.97438 * 15 13 4 17 17 C 1.42898 * 113.99971 * 179.97438 * 16 15 13 18 18 C 1.50693 * 109.47295 * 180.02562 * 17 16 15 19 19 N 1.30257 * 125.62184 * 90.02629 * 18 17 16 20 20 C 1.34473 * 108.70465 * 179.97438 * 19 18 17 21 21 C 1.34330 * 107.66967 * 0.26326 * 20 19 18 22 22 C 1.50693 * 126.44586 * 179.73604 * 21 20 19 23 23 O 1.33975 * 125.62070 * 269.98794 * 18 17 16 24 24 H 1.09003 * 109.47142 * 300.00077 * 1 2 3 25 25 H 1.09000 * 109.47168 * 60.00068 * 1 2 3 26 26 H 1.09004 * 109.46773 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47429 * 240.00351 * 2 1 3 28 28 H 1.08997 * 109.46999 * 119.99176 * 2 1 3 29 29 H 1.08995 * 109.46926 * 59.99478 * 3 2 1 30 30 H 1.08997 * 109.46658 * 299.99956 * 3 2 1 31 31 H 0.97003 * 119.99730 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46568 * 60.00562 * 15 13 4 33 33 H 1.08995 * 109.46875 * 300.00245 * 15 13 4 34 34 H 1.09004 * 109.47065 * 60.00170 * 17 16 15 35 35 H 1.09003 * 109.47449 * 300.00406 * 17 16 15 36 36 H 1.08002 * 126.16532 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.47300 * 90.00047 * 22 21 20 38 38 H 1.09007 * 109.47528 * 209.99735 * 22 21 20 39 39 H 1.09002 * 109.47310 * 329.99422 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5511 1.1833 6 1 5.0699 0.9489 1.3548 7 6 3.7521 2.4358 2.1611 8 7 2.9268 3.4085 1.8452 9 14 4.3366 2.2426 3.9248 10 1 5.5809 3.0284 4.1227 11 1 3.2864 2.7369 4.8512 12 1 4.6069 0.8091 4.2024 13 6 4.1793 1.3361 -1.1614 14 8 5.3922 1.3356 -1.1609 15 6 3.4263 1.2163 -2.4614 16 8 4.3555 1.1178 -3.5427 17 6 3.7415 0.9990 -4.8275 18 6 4.8086 0.9020 -5.8872 19 7 5.3462 -0.2012 -6.3238 20 6 6.2566 0.1057 -7.2646 21 6 6.2725 1.4425 -7.3960 22 6 7.1438 2.2397 -8.3320 23 8 5.3602 1.9363 -6.5360 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 2.6214 4.0263 2.5278 32 1 2.7995 2.0970 -2.6005 33 1 2.8001 0.3246 -2.4376 34 1 3.1204 1.8747 -5.0159 35 1 3.1223 0.1022 -4.8528 36 1 6.8685 -0.5958 -7.8123 37 1 6.6304 2.3691 -9.2848 38 1 7.3487 3.2167 -7.8941 39 1 8.0827 1.7101 -8.4940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350683097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = -53.262936 kcal Electronic energy + Delta-G solvation = -21931.426283 eV Core-core repulsion = 18455.616324 eV Total energy + Delta-G solvation = -3475.809958 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.34769 -38.85988 -37.24475 -35.17088 -34.74448 -32.90551 -32.73224 -31.21014 -29.54467 -27.39187 -25.73183 -25.13588 -23.98984 -22.33873 -21.12110 -21.03343 -19.22600 -17.40753 -16.98328 -16.80660 -16.20263 -15.84799 -15.54293 -15.03194 -14.65548 -14.42155 -14.11129 -13.76469 -13.62104 -13.43347 -13.30358 -12.86130 -12.61210 -12.43180 -11.99063 -11.69473 -11.57123 -11.42125 -11.33182 -11.18019 -10.97560 -10.66913 -10.56069 -10.33933 -10.33044 -10.01732 -9.49761 -8.92355 -8.80549 -8.34769 -7.42667 -6.32746 -4.01116 1.29358 2.44795 2.64473 3.18650 3.26684 3.31463 3.68652 3.88350 4.10457 4.35054 4.62012 4.88283 4.92219 4.96207 5.06773 5.15274 5.15310 5.33664 5.41966 5.44407 5.53769 5.61557 5.73142 5.76449 5.80932 5.96891 6.01381 6.17017 6.22168 6.32756 6.42397 6.55652 6.86946 7.16283 7.22146 7.58755 7.69611 8.29582 8.52530 9.19629 9.36695 10.00071 10.72613 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023198 B = 0.003626 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.704202 B = 7719.867527 C = 8470.753438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.107 3.893 4 N -0.441 5.441 5 C -0.307 4.307 6 H 0.089 0.911 7 C 0.039 3.961 8 N -0.872 5.872 9 Si 0.919 3.081 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.464 3.536 14 O -0.558 6.558 15 C 0.049 3.951 16 O -0.355 6.355 17 C 0.156 3.844 18 C 0.198 3.802 19 N -0.463 5.463 20 C -0.045 4.045 21 C -0.046 4.046 22 C -0.067 4.067 23 O -0.194 6.194 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.184 0.816 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 -2.979 -15.171 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C -0.017 4.017 4 N -0.162 5.162 5 C -0.435 4.435 6 H 0.106 0.894 7 C -0.165 4.165 8 N -0.509 5.509 9 Si 0.745 3.255 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.251 3.749 14 O -0.439 6.439 15 C -0.030 4.030 16 O -0.272 6.272 17 C 0.078 3.922 18 C -0.008 4.008 19 N -0.194 5.194 20 C -0.184 4.184 21 C -0.100 4.100 22 C -0.124 4.124 23 O -0.080 6.080 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.201 0.799 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.606 -3.348 -14.782 15.379 hybrid contribution 0.060 0.650 0.515 0.832 sum -2.546 -2.698 -14.267 14.741 Atomic orbital electron populations 1.21684 0.96239 1.00774 1.01595 1.22024 0.94962 0.99264 1.01918 1.21583 0.82188 0.94325 1.03638 1.43356 1.04397 1.64135 1.04288 1.19376 1.12215 1.21496 0.90387 0.89362 1.25430 0.97012 0.93454 1.00627 1.69925 1.33520 1.13433 1.34060 0.86058 0.78450 0.78944 0.82006 1.20241 1.20819 1.19327 1.19999 0.88238 0.82593 0.84086 1.90563 1.13859 1.53107 1.86354 1.22525 0.91998 1.01272 0.87212 1.88105 1.32155 1.94742 1.12224 1.20479 0.88244 1.03026 0.80407 1.25688 0.98681 0.79430 0.97024 1.70418 1.09398 1.28697 1.10849 1.23097 1.01231 0.93928 1.00178 1.23526 0.95030 0.94753 0.96667 1.20274 0.96728 0.99799 0.95624 1.84401 1.42637 1.38651 1.42355 0.92663 0.93179 0.93365 0.93163 0.91444 0.87535 0.93506 0.92248 0.90999 0.91189 0.90296 0.88834 0.79876 0.89859 0.90162 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.14 -2.47 6.17 -26.72 -0.16 -2.63 16 3 C 0.11 2.23 4.69 -4.04 -0.02 2.22 16 4 N -0.44 -11.19 2.50 -114.81 -0.29 -11.47 16 5 C -0.31 -8.56 8.84 -14.93 -0.13 -8.70 16 6 H 0.09 2.58 7.82 -52.49 -0.41 2.17 16 7 C 0.04 1.04 4.95 -17.47 -0.09 0.95 16 8 N -0.87 -23.39 11.61 55.50 0.64 -22.74 16 9 Si 0.92 20.64 29.59 -169.99 -5.03 15.61 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.46 11.85 7.67 -10.98 -0.08 11.77 16 14 O -0.56 -16.82 16.41 -14.36 -0.24 -17.06 16 15 C 0.05 0.95 5.03 36.01 0.18 1.13 16 16 O -0.35 -7.12 9.86 -55.14 -0.54 -7.67 16 17 C 0.16 2.29 6.56 36.00 0.24 2.53 16 18 C 0.20 3.21 7.97 -12.95 -0.10 3.11 16 19 N -0.46 -7.62 11.29 -11.10 -0.13 -7.75 16 20 C -0.05 -0.59 11.80 -17.77 -0.21 -0.80 16 21 C -0.05 -0.58 7.39 -35.69 -0.26 -0.84 16 22 C -0.07 -0.50 10.43 36.00 0.38 -0.12 16 23 O -0.19 -3.00 10.78 5.33 0.06 -2.94 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.82 6.59 -51.93 -0.34 0.48 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.11 2.47 5.76 -51.93 -0.30 2.17 16 30 H 0.05 0.88 6.66 -51.93 -0.35 0.53 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.07 1.22 7.41 -51.93 -0.38 0.83 16 33 H 0.07 1.14 6.54 -51.93 -0.34 0.80 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 335.20 15.07 5.05 5.05 Total: -1.00 -35.60 335.20 -5.86 -41.46 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.48 Total: 0.51 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 0.10 Total: 6.99 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.23 Total: -41.96 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.72 Total: -27.66 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.60 -5.86 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350683097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.803 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds