Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46878 * 2 1 4 4 N 1.46492 * 109.47053 * 179.97438 * 3 2 1 5 5 C 1.37103 * 120.00097 * 264.77069 * 4 3 2 6 6 H 1.07998 * 120.00198 * 138.85959 * 5 4 3 7 7 C 1.38947 * 119.99621 * 318.85318 * 5 4 3 8 8 N 1.31415 * 120.00125 * 341.83076 * 7 5 4 9 9 Si 1.86801 * 119.99708 * 161.82628 * 7 5 4 10 10 H 1.48496 * 109.47111 * 90.00527 * 9 7 5 11 11 H 1.48505 * 109.46975 * 209.99931 * 9 7 5 12 12 H 1.48494 * 109.47251 * 330.00015 * 9 7 5 13 13 C 1.34774 * 120.00235 * 84.76889 * 4 3 2 14 14 O 1.21291 * 120.00659 * 180.02562 * 13 4 3 15 15 C 1.50708 * 119.99788 * 359.97438 * 13 4 3 16 16 O 1.42905 * 109.47019 * 179.97438 * 15 13 4 17 17 C 1.42898 * 113.99971 * 179.97438 * 16 15 13 18 18 C 1.50693 * 109.47295 * 180.02562 * 17 16 15 19 19 N 1.30257 * 125.62184 * 90.02629 * 18 17 16 20 20 C 1.34473 * 108.70465 * 179.97438 * 19 18 17 21 21 C 1.34330 * 107.66967 * 0.26326 * 20 19 18 22 22 C 1.50693 * 126.44586 * 179.73604 * 21 20 19 23 23 O 1.33975 * 125.62070 * 269.98794 * 18 17 16 24 24 H 1.09003 * 109.47142 * 300.00077 * 1 2 3 25 25 H 1.09000 * 109.47168 * 60.00068 * 1 2 3 26 26 H 1.09004 * 109.46773 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47429 * 240.00351 * 2 1 3 28 28 H 1.08997 * 109.46999 * 119.99176 * 2 1 3 29 29 H 1.08995 * 109.46926 * 59.99478 * 3 2 1 30 30 H 1.08997 * 109.46658 * 299.99956 * 3 2 1 31 31 H 0.97003 * 119.99730 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46568 * 60.00562 * 15 13 4 33 33 H 1.08995 * 109.46875 * 300.00245 * 15 13 4 34 34 H 1.09004 * 109.47065 * 60.00170 * 17 16 15 35 35 H 1.09003 * 109.47449 * 300.00406 * 17 16 15 36 36 H 1.08002 * 126.16532 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.47300 * 90.00047 * 22 21 20 38 38 H 1.09007 * 109.47528 * 209.99735 * 22 21 20 39 39 H 1.09002 * 109.47310 * 329.99422 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5511 1.1833 6 1 5.0699 0.9489 1.3548 7 6 3.7521 2.4358 2.1611 8 7 2.9268 3.4085 1.8452 9 14 4.3366 2.2426 3.9248 10 1 5.5809 3.0284 4.1227 11 1 3.2864 2.7369 4.8512 12 1 4.6069 0.8091 4.2024 13 6 4.1793 1.3361 -1.1614 14 8 5.3922 1.3356 -1.1609 15 6 3.4263 1.2163 -2.4614 16 8 4.3555 1.1178 -3.5427 17 6 3.7415 0.9990 -4.8275 18 6 4.8086 0.9020 -5.8872 19 7 5.3462 -0.2012 -6.3238 20 6 6.2566 0.1057 -7.2646 21 6 6.2725 1.4425 -7.3960 22 6 7.1438 2.2397 -8.3320 23 8 5.3602 1.9363 -6.5360 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 2.6214 4.0263 2.5278 32 1 2.7995 2.0970 -2.6005 33 1 2.8001 0.3246 -2.4376 34 1 3.1204 1.8747 -5.0159 35 1 3.1223 0.1022 -4.8528 36 1 6.8685 -0.5958 -7.8123 37 1 6.6304 2.3691 -9.2848 38 1 7.3487 3.2167 -7.8941 39 1 8.0827 1.7101 -8.4940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350683097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = -79.335272 kcal Electronic energy + Delta-G solvation = -21932.556864 eV Core-core repulsion = 18455.616324 eV Total energy + Delta-G solvation = -3476.940540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.40516 -40.65389 -38.74349 -37.05291 -35.85189 -34.58515 -33.70098 -33.00902 -30.71214 -28.89249 -27.27612 -26.24465 -25.72883 -23.38720 -22.47920 -22.18531 -21.05824 -18.94395 -18.50014 -18.13610 -17.68825 -17.21291 -17.02147 -16.83635 -16.03537 -15.64991 -15.55536 -15.36828 -15.11681 -14.54053 -14.13404 -14.05562 -13.87142 -13.43505 -13.40118 -13.27792 -13.04164 -12.98309 -12.89692 -12.62788 -12.46290 -12.24198 -12.07037 -11.96295 -11.65868 -11.52868 -10.95881 -10.78469 -10.38168 -9.75946 -9.41614 -8.36070 -6.12961 0.23089 1.37213 1.38566 1.42232 1.53702 1.63607 1.97908 2.23115 2.53788 2.98417 3.01240 3.47857 3.75894 3.88934 4.00769 4.04464 4.11190 4.19277 4.25683 4.33159 4.41163 4.48454 4.60718 4.64670 4.66913 4.78154 4.99184 5.00709 5.13043 5.18248 5.25750 5.33137 5.42320 5.46047 5.60471 5.87329 6.23299 6.55802 6.62644 7.16991 7.40151 8.02790 8.67707 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023198 B = 0.003626 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.704202 B = 7719.867527 C = 8470.753438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.106 3.894 4 N -0.448 5.448 5 C -0.345 4.345 6 H 0.058 0.942 7 C 0.008 3.992 8 N -0.887 5.887 9 Si 0.981 3.019 10 H -0.280 1.280 11 H -0.263 1.263 12 H -0.267 1.267 13 C 0.442 3.558 14 O -0.623 6.623 15 C 0.066 3.934 16 O -0.396 6.396 17 C 0.154 3.846 18 C 0.168 3.832 19 N -0.489 5.489 20 C -0.066 4.066 21 C -0.042 4.042 22 C -0.066 4.066 23 O -0.211 6.211 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.275 0.725 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.215 0.785 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 -3.010 -16.398 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C -0.017 4.017 4 N -0.168 5.168 5 C -0.473 4.473 6 H 0.076 0.924 7 C -0.195 4.195 8 N -0.524 5.524 9 Si 0.804 3.196 10 H -0.206 1.206 11 H -0.188 1.188 12 H -0.191 1.191 13 C 0.231 3.769 14 O -0.509 6.509 15 C -0.013 4.013 16 O -0.315 6.315 17 C 0.077 3.923 18 C -0.038 4.038 19 N -0.221 5.221 20 C -0.204 4.204 21 C -0.095 4.095 22 C -0.123 4.123 23 O -0.098 6.098 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.232 0.768 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.167 -3.373 -16.018 16.892 hybrid contribution 0.591 0.691 0.803 1.213 sum -3.577 -2.682 -15.215 15.858 Atomic orbital electron populations 1.21638 0.92998 1.02472 1.02400 1.21925 0.97612 0.96365 1.01452 1.21747 0.79494 0.96863 1.03580 1.43666 1.06190 1.63145 1.03824 1.19327 1.12697 1.22692 0.92595 0.92394 1.26136 0.96823 0.92639 1.03891 1.69975 1.33592 1.13443 1.35409 0.85146 0.78160 0.78860 0.77432 1.20623 1.18756 1.19121 1.21104 0.88044 0.81486 0.86262 1.90504 1.16748 1.56023 1.87625 1.22317 0.90914 1.04008 0.84019 1.88033 1.34036 1.95186 1.14219 1.20821 0.88152 1.05651 0.77684 1.26005 0.99973 0.79654 0.98176 1.70377 1.10383 1.29438 1.11902 1.23685 1.01402 0.95107 1.00212 1.24526 0.93881 0.95333 0.95785 1.20563 0.97011 0.99384 0.95311 1.84400 1.43382 1.39027 1.43003 0.93174 0.91100 0.91234 0.91964 0.93670 0.89892 0.91073 0.91562 0.88273 0.87788 0.87273 0.86347 0.76848 0.87411 0.90096 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.13 -4.46 6.17 30.60 0.19 -4.28 16 3 C 0.11 4.37 4.69 86.38 0.41 4.77 16 4 N -0.45 -23.28 2.50 -635.55 -1.59 -24.87 16 5 C -0.35 -20.02 8.84 84.04 0.74 -19.28 16 6 H 0.06 3.62 7.82 -2.91 -0.02 3.60 16 7 C 0.01 0.44 4.95 84.93 0.42 0.86 16 8 N -0.89 -47.73 11.61 21.66 0.25 -47.47 16 9 Si 0.98 42.77 29.59 68.60 2.03 44.80 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 C 0.44 23.15 7.67 87.66 0.67 23.82 16 14 O -0.62 -39.55 16.41 15.97 0.26 -39.29 16 15 C 0.07 2.47 5.03 71.24 0.36 2.83 16 16 O -0.40 -15.83 9.86 -129.94 -1.28 -17.11 16 17 C 0.15 4.30 6.56 71.23 0.47 4.77 16 18 C 0.17 5.39 7.97 88.34 0.70 6.09 16 19 N -0.49 -15.97 11.29 -303.83 -3.43 -19.40 16 20 C -0.07 -1.65 11.80 83.40 0.98 -0.67 16 21 C -0.04 -1.00 7.39 24.79 0.18 -0.81 16 22 C -0.07 -0.81 10.43 71.23 0.74 -0.07 16 23 O -0.21 -6.44 10.78 -3.83 -0.04 -6.49 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.90 6.59 -2.39 -0.02 1.88 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 3.83 5.76 -2.39 -0.01 3.82 16 30 H 0.07 2.53 6.66 -2.39 -0.02 2.51 16 31 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 32 H 0.10 3.12 7.41 -2.39 -0.02 3.10 16 33 H 0.10 3.12 6.54 -2.39 -0.02 3.10 16 34 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.12 2.62 8.14 -2.39 -0.02 2.61 16 36 H 0.21 3.64 8.06 -2.91 -0.02 3.61 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -82.65 335.20 3.83 -78.82 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.05 Total: 15.61 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.58 Total: 15.40 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -4.77 Total: -91.75 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -1.06 Total: -62.89 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -82.65 3.83 -78.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350683097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.517 kcal (2) G-P(sol) polarization free energy of solvation -82.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds