Wall clock time and date at job start Tue Mar 31 2020 05:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39643 * 120.19203 * 349.50818 * 3 2 1 5 5 C 1.37800 * 119.77473 * 179.73294 * 4 3 2 6 6 C 1.38674 * 120.42022 * 0.58115 * 5 4 3 7 7 C 1.38382 * 120.08701 * 359.67541 * 6 5 4 8 8 C 1.38228 * 120.00228 * 0.03167 * 7 6 5 9 9 C 1.51403 * 109.73725 * 180.02562 * 7 6 5 10 10 H 1.09005 * 110.29748 * 223.85768 * 9 7 6 11 11 N 1.46897 * 110.30383 * 101.71015 * 9 7 6 12 12 C 1.46904 * 110.99853 * 83.41143 * 11 9 7 13 13 C 1.52995 * 109.47056 * 183.94775 * 12 11 9 14 14 C 1.50698 * 115.55173 * 65.33882 * 13 12 11 15 15 H 1.07999 * 119.99955 * 265.74148 * 14 13 12 16 16 C 1.37876 * 120.00051 * 85.74705 * 14 13 12 17 17 N 1.31513 * 120.00023 * 184.46262 * 16 14 13 18 18 Si 1.86800 * 119.99962 * 4.45219 * 16 14 13 19 19 H 1.48507 * 109.46835 * 94.30510 * 18 16 14 20 20 H 1.48493 * 109.47202 * 214.30410 * 18 16 14 21 21 H 1.48504 * 109.47125 * 334.30807 * 18 16 14 22 22 C 1.53003 * 117.49850 * 279.67188 * 13 12 11 23 23 C 1.53001 * 117.49775 * 211.01373 * 13 12 11 24 24 C 1.54334 * 105.17470 * 342.78163 * 9 7 6 25 25 C 1.51426 * 130.20654 * 179.70038 * 6 5 4 26 26 H 1.07993 * 120.11609 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.78682 * 180.27790 * 5 4 3 28 28 H 1.07999 * 119.94913 * 179.97438 * 8 7 6 29 29 H 1.00899 * 110.99535 * 319.46060 * 11 9 7 30 30 H 1.09004 * 109.46868 * 303.94558 * 12 11 9 31 31 H 1.08999 * 109.47022 * 63.94427 * 12 11 9 32 32 H 0.96999 * 120.00029 * 179.97438 * 17 16 14 33 33 H 1.09003 * 117.49924 * 359.97438 * 22 13 12 34 34 H 1.08992 * 117.50411 * 145.01977 * 22 13 12 35 35 H 1.09010 * 117.49657 * 214.97730 * 23 13 12 36 36 H 1.08990 * 117.50040 * 359.97438 * 23 13 12 37 37 H 1.08997 * 110.81871 * 268.18510 * 24 9 7 38 38 H 1.09003 * 110.98555 * 144.71986 * 24 9 7 39 39 H 1.08994 * 110.30180 * 316.13906 * 25 6 5 40 40 H 1.09006 * 110.29583 * 78.28722 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2708 -1.1859 0.2198 5 6 4.6487 -1.1764 0.2125 6 6 5.3417 0.0059 0.0002 7 6 4.6512 1.1860 -0.2129 8 6 3.2689 1.1876 -0.2137 9 6 5.6310 2.3220 -0.4172 10 1 5.3134 3.2009 0.1440 11 7 5.7484 2.6432 -1.8458 12 6 4.6694 3.5438 -2.2733 13 6 4.7670 3.7763 -3.7823 14 6 4.5288 2.5630 -4.6438 15 1 5.3645 1.9678 -4.9811 16 6 3.2441 2.2128 -5.0013 17 7 3.0285 1.1064 -5.6787 18 14 1.8097 3.3100 -4.5235 19 1 1.5040 4.2396 -5.6405 20 1 0.6184 2.4708 -4.2377 21 1 2.1666 4.0918 -3.3124 22 6 5.7902 4.8021 -4.2743 23 6 4.2954 5.1286 -4.3207 24 6 6.9769 1.7973 0.1261 25 6 6.8319 0.2706 -0.0466 26 1 2.7363 -2.1086 0.3902 27 1 5.1925 -2.0948 0.3780 28 1 2.7308 2.1092 -0.3797 29 1 5.7616 1.8036 -2.4052 30 1 3.7053 3.0936 -2.0367 31 1 4.7633 4.4964 -1.7520 32 1 2.1246 0.8598 -5.9299 33 1 6.3934 5.3115 -3.5228 34 1 6.2907 4.5996 -5.2211 35 1 3.8130 5.1407 -5.2982 36 1 3.9152 5.8523 -3.5999 37 1 7.0984 2.0582 1.1774 38 1 7.8108 2.1766 -0.4645 39 1 7.3345 -0.2517 0.7672 40 1 7.2413 -0.0415 -1.0074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353643129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:49 Heat of formation + Delta-G solvation = 78.762191 kcal Electronic energy + Delta-G solvation = -21832.884200 eV Core-core repulsion = 18805.941295 eV Total energy + Delta-G solvation = -3026.942905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.35232 -37.52037 -36.81369 -35.50082 -33.07895 -32.08631 -30.87057 -29.34913 -27.06401 -25.60822 -24.02587 -22.96991 -21.80377 -21.55657 -20.46070 -18.95269 -18.07478 -16.40575 -15.95332 -15.49446 -15.19252 -14.93654 -14.79946 -14.02117 -13.86852 -13.77813 -13.45222 -13.12251 -13.05270 -12.68976 -12.56328 -12.37386 -12.09945 -11.97319 -11.60030 -11.52504 -11.13466 -11.00120 -10.92804 -10.79035 -10.70431 -10.39644 -10.02786 -9.46030 -9.05068 -8.91943 -8.66841 -8.57227 -8.38957 -7.75142 -6.12488 -4.15063 0.82789 1.35858 2.73982 2.99376 3.27396 3.39534 3.41939 3.86000 3.96480 4.41534 4.43971 4.53608 4.72477 4.91724 5.11312 5.15980 5.19542 5.22153 5.28792 5.36280 5.60374 5.77029 5.79736 5.83482 5.92088 6.00215 6.12690 6.14649 6.16981 6.22254 6.29384 6.31556 6.43554 6.50811 6.55150 6.59771 6.80625 6.83286 7.10061 7.19701 7.56031 7.67729 7.76713 8.05581 8.50649 8.91972 9.52293 10.98865 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.007586 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.652147 B = 3690.271876 C = 5006.050185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.261 3.739 3 C -0.036 4.036 4 C -0.067 4.067 5 C -0.113 4.113 6 C -0.056 4.056 7 C -0.125 4.125 8 C -0.044 4.044 9 C 0.123 3.877 10 H 0.083 0.917 11 N -0.659 5.659 12 C 0.096 3.904 13 C 0.005 3.995 14 C -0.488 4.488 15 H 0.078 0.922 16 C 0.081 3.919 17 N -0.895 5.895 18 Si 0.871 3.129 19 H -0.280 1.280 20 H -0.296 1.296 21 H -0.256 1.256 22 C -0.169 4.169 23 C -0.205 4.205 24 C -0.109 4.109 25 C -0.087 4.087 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.358 0.642 30 H 0.027 0.973 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.177 -1.366 14.053 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.054 4.054 3 C -0.039 4.039 4 C -0.088 4.088 5 C -0.131 4.131 6 C -0.058 4.058 7 C -0.127 4.127 8 C -0.065 4.065 9 C 0.012 3.988 10 H 0.101 0.899 11 N -0.290 5.290 12 C -0.033 4.033 13 C 0.004 3.996 14 C -0.525 4.525 15 H 0.096 0.904 16 C -0.122 4.122 17 N -0.532 5.532 18 Si 0.699 3.301 19 H -0.206 1.206 20 H -0.223 1.223 21 H -0.180 1.180 22 C -0.206 4.206 23 C -0.243 4.243 24 C -0.147 4.147 25 C -0.124 4.124 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.178 0.822 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.736 -0.956 14.040 15.196 hybrid contribution -1.542 -0.110 -0.079 1.548 sum 4.194 -1.066 13.961 14.616 Atomic orbital electron populations 1.81209 1.12108 1.07462 1.09314 1.25710 0.92698 0.93648 0.93381 1.15810 0.84191 0.95363 1.08544 1.20979 0.94005 0.96342 0.97501 1.20499 0.93148 0.97562 1.01899 1.20924 0.96603 0.93062 0.95184 1.21422 0.93382 0.98143 0.99789 1.20667 0.93308 0.96821 0.95726 1.21154 0.91612 0.93950 0.92096 0.89926 1.60798 1.46676 1.20992 1.00513 1.21684 0.91541 0.94375 0.95707 1.19359 0.99302 0.89537 0.91449 1.20276 0.93674 1.08348 1.30234 0.90375 1.24950 0.98565 0.94517 0.94175 1.69890 1.21484 1.22962 1.38853 0.86964 0.82049 0.80912 0.80156 1.20610 1.22333 1.17968 1.22715 0.90793 1.05256 1.01832 1.22979 0.98081 1.01329 1.01929 1.22312 0.97723 0.93848 1.00849 1.21184 0.91025 0.97258 1.02927 0.85072 0.85287 0.85599 0.82155 0.95494 0.93511 0.92665 0.90837 0.89984 0.89838 0.91243 0.91009 0.89068 0.90558 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.71 18.54 41.84 0.78 -6.93 16 2 C 0.26 4.24 15.33 -22.47 -0.34 3.89 16 3 C -0.04 -0.52 5.73 -106.98 -0.61 -1.13 16 4 C -0.07 -0.81 9.76 -39.22 -0.38 -1.20 16 5 C -0.11 -1.26 10.02 -39.58 -0.40 -1.66 16 6 C -0.06 -0.69 6.14 -104.05 -0.64 -1.33 16 7 C -0.13 -1.76 5.33 -104.23 -0.56 -2.31 16 8 C -0.04 -0.66 9.09 -39.12 -0.36 -1.02 16 9 C 0.12 1.66 3.16 -67.82 -0.21 1.44 16 10 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 11 N -0.66 -11.16 6.30 -106.84 -0.67 -11.83 16 12 C 0.10 1.86 5.02 -3.82 -0.02 1.84 16 13 C 0.00 0.10 0.99 -155.66 -0.15 -0.05 16 14 C -0.49 -12.92 8.76 -34.44 -0.30 -13.22 16 15 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 16 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 17 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 18 Si 0.87 21.74 24.91 -169.99 -4.23 17.51 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 21 H -0.26 -5.97 5.74 56.52 0.32 -5.64 16 22 C -0.17 -3.37 9.96 -26.69 -0.27 -3.63 16 23 C -0.21 -4.32 7.28 -26.69 -0.19 -4.51 16 24 C -0.11 -1.15 6.77 -25.34 -0.17 -1.32 16 25 C -0.09 -0.88 6.77 -26.84 -0.18 -1.06 16 26 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 27 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 28 H 0.13 1.93 7.39 -52.49 -0.39 1.54 16 29 H 0.36 6.80 7.86 -39.29 -0.31 6.49 16 30 H 0.03 0.56 5.64 -51.93 -0.29 0.27 16 31 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.08 1.86 7.05 -51.92 -0.37 1.49 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -29.96 332.65 -8.86 -38.82 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.63 Total: 6.49 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -4.89 Total: -23.12 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.88 Total: -44.71 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.23 Total: 17.51 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.96 -8.86 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353643129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.584 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds