Wall clock time and date at job start Tue Mar 31 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39643 * 120.19203 * 349.50818 * 3 2 1 5 5 C 1.37800 * 119.77473 * 179.73294 * 4 3 2 6 6 C 1.38674 * 120.42022 * 0.58115 * 5 4 3 7 7 C 1.38382 * 120.08701 * 359.67541 * 6 5 4 8 8 C 1.38228 * 120.00228 * 0.03167 * 7 6 5 9 9 C 1.51403 * 109.73725 * 180.02562 * 7 6 5 10 10 H 1.09005 * 110.29748 * 223.85768 * 9 7 6 11 11 N 1.46897 * 110.30383 * 101.71015 * 9 7 6 12 12 C 1.46904 * 110.99853 * 83.41143 * 11 9 7 13 13 C 1.52995 * 109.47056 * 183.94775 * 12 11 9 14 14 C 1.50698 * 115.55173 * 65.33882 * 13 12 11 15 15 H 1.07999 * 119.99955 * 265.74148 * 14 13 12 16 16 C 1.37876 * 120.00051 * 85.74705 * 14 13 12 17 17 N 1.31513 * 120.00023 * 184.46262 * 16 14 13 18 18 Si 1.86800 * 119.99962 * 4.45219 * 16 14 13 19 19 H 1.48507 * 109.46835 * 94.30510 * 18 16 14 20 20 H 1.48493 * 109.47202 * 214.30410 * 18 16 14 21 21 H 1.48504 * 109.47125 * 334.30807 * 18 16 14 22 22 C 1.53003 * 117.49850 * 279.67188 * 13 12 11 23 23 C 1.53001 * 117.49775 * 211.01373 * 13 12 11 24 24 C 1.54334 * 105.17470 * 342.78163 * 9 7 6 25 25 C 1.51426 * 130.20654 * 179.70038 * 6 5 4 26 26 H 1.07993 * 120.11609 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.78682 * 180.27790 * 5 4 3 28 28 H 1.07999 * 119.94913 * 179.97438 * 8 7 6 29 29 H 1.00899 * 110.99535 * 319.46060 * 11 9 7 30 30 H 1.09004 * 109.46868 * 303.94558 * 12 11 9 31 31 H 1.08999 * 109.47022 * 63.94427 * 12 11 9 32 32 H 0.96999 * 120.00029 * 179.97438 * 17 16 14 33 33 H 1.09003 * 117.49924 * 359.97438 * 22 13 12 34 34 H 1.08992 * 117.50411 * 145.01977 * 22 13 12 35 35 H 1.09010 * 117.49657 * 214.97730 * 23 13 12 36 36 H 1.08990 * 117.50040 * 359.97438 * 23 13 12 37 37 H 1.08997 * 110.81871 * 268.18510 * 24 9 7 38 38 H 1.09003 * 110.98555 * 144.71986 * 24 9 7 39 39 H 1.08994 * 110.30180 * 316.13906 * 25 6 5 40 40 H 1.09006 * 110.29583 * 78.28722 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2708 -1.1859 0.2198 5 6 4.6487 -1.1764 0.2125 6 6 5.3417 0.0059 0.0002 7 6 4.6512 1.1860 -0.2129 8 6 3.2689 1.1876 -0.2137 9 6 5.6310 2.3220 -0.4172 10 1 5.3134 3.2009 0.1440 11 7 5.7484 2.6432 -1.8458 12 6 4.6694 3.5438 -2.2733 13 6 4.7670 3.7763 -3.7823 14 6 4.5288 2.5630 -4.6438 15 1 5.3645 1.9678 -4.9811 16 6 3.2441 2.2128 -5.0013 17 7 3.0285 1.1064 -5.6787 18 14 1.8097 3.3100 -4.5235 19 1 1.5040 4.2396 -5.6405 20 1 0.6184 2.4708 -4.2377 21 1 2.1666 4.0918 -3.3124 22 6 5.7902 4.8021 -4.2743 23 6 4.2954 5.1286 -4.3207 24 6 6.9769 1.7973 0.1261 25 6 6.8319 0.2706 -0.0466 26 1 2.7363 -2.1086 0.3902 27 1 5.1925 -2.0948 0.3780 28 1 2.7308 2.1092 -0.3797 29 1 5.7616 1.8036 -2.4052 30 1 3.7053 3.0936 -2.0367 31 1 4.7633 4.4964 -1.7520 32 1 2.1246 0.8598 -5.9299 33 1 6.3934 5.3115 -3.5228 34 1 6.2907 4.5996 -5.2211 35 1 3.8130 5.1407 -5.2982 36 1 3.9152 5.8523 -3.5999 37 1 7.0984 2.0582 1.1774 38 1 7.8108 2.1766 -0.4645 39 1 7.3345 -0.2517 0.7672 40 1 7.2413 -0.0415 -1.0074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353643129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:48 Heat of formation + Delta-G solvation = 61.337733 kcal Electronic energy + Delta-G solvation = -21833.639781 eV Core-core repulsion = 18805.941295 eV Total energy + Delta-G solvation = -3027.698486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.36195 -39.00438 -38.17112 -36.70090 -34.34720 -34.13053 -31.94615 -30.33233 -28.40230 -27.40870 -25.38100 -24.05999 -23.23126 -22.76334 -21.49053 -20.72421 -19.20402 -18.23344 -17.13708 -16.83531 -16.51010 -16.21925 -16.09614 -15.50519 -15.12233 -15.03375 -14.79679 -14.63092 -14.30469 -14.23593 -13.85210 -13.64945 -13.55773 -13.21774 -13.05051 -12.87549 -12.58482 -12.42611 -12.17934 -11.96180 -11.92336 -11.76126 -11.66551 -11.28117 -10.96155 -10.55045 -10.26590 -9.90672 -9.63953 -9.08434 -8.30423 -6.33349 -0.23899 0.35494 1.25695 1.32711 1.41322 1.46439 1.82705 2.32305 2.73001 2.84466 3.05967 3.17027 3.51385 3.59321 3.82255 3.91993 4.16876 4.22492 4.30917 4.34438 4.44682 4.48785 4.55539 4.65744 4.75654 4.84519 4.89464 4.92263 4.93807 5.05254 5.11726 5.18927 5.21749 5.29756 5.39026 5.43853 5.48035 5.56632 5.60852 5.75435 5.87767 6.29965 6.30930 6.38867 6.58932 6.77621 7.36026 8.84111 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.007586 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.652147 B = 3690.271876 C = 5006.050185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.277 3.723 3 C -0.059 4.059 4 C -0.061 4.061 5 C -0.110 4.110 6 C -0.054 4.054 7 C -0.144 4.144 8 C -0.063 4.063 9 C 0.118 3.882 10 H 0.088 0.912 11 N -0.657 5.657 12 C 0.105 3.895 13 C -0.020 4.020 14 C -0.471 4.471 15 H 0.040 0.960 16 C 0.030 3.970 17 N -0.943 5.943 18 Si 0.918 3.082 19 H -0.276 1.276 20 H -0.314 1.314 21 H -0.228 1.228 22 C -0.149 4.149 23 C -0.206 4.206 24 C -0.100 4.100 25 C -0.084 4.084 26 H 0.155 0.845 27 H 0.165 0.835 28 H 0.112 0.888 29 H 0.342 0.658 30 H 0.008 0.992 31 H 0.069 0.931 32 H 0.260 0.740 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.184 -0.707 16.277 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.037 4.037 3 C -0.062 4.062 4 C -0.082 4.082 5 C -0.127 4.127 6 C -0.055 4.055 7 C -0.146 4.146 8 C -0.084 4.084 9 C 0.008 3.992 10 H 0.106 0.894 11 N -0.286 5.286 12 C -0.025 4.025 13 C -0.022 4.022 14 C -0.509 4.509 15 H 0.059 0.941 16 C -0.167 4.167 17 N -0.583 5.583 18 Si 0.745 3.255 19 H -0.202 1.202 20 H -0.243 1.243 21 H -0.150 1.150 22 C -0.186 4.186 23 C -0.244 4.244 24 C -0.138 4.138 25 C -0.120 4.120 26 H 0.173 0.827 27 H 0.183 0.817 28 H 0.130 0.870 29 H 0.161 0.839 30 H 0.026 0.974 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.768 -0.260 16.290 18.049 hybrid contribution -2.016 -0.359 -0.782 2.192 sum 5.751 -0.619 15.508 16.552 Atomic orbital electron populations 1.81203 1.13267 1.08838 1.11184 1.26067 0.93058 0.92437 0.92129 1.15975 0.83242 0.96445 1.10587 1.21331 0.94681 0.96213 0.95937 1.20915 0.92809 0.98634 1.00366 1.21329 0.97841 0.92729 0.93609 1.21520 0.92973 0.99320 1.00756 1.20699 0.94135 0.96634 0.96928 1.21351 0.93473 0.94399 0.89988 0.89358 1.60836 1.45450 1.20010 1.02270 1.21514 0.91518 0.95794 0.93642 1.19355 1.01931 0.88345 0.92522 1.20426 0.92071 1.09034 1.29320 0.94146 1.25587 1.00989 0.95503 0.94654 1.70023 1.21620 1.25145 1.41530 0.86195 0.78727 0.79523 0.81016 1.20223 1.24260 1.15034 1.22726 0.90503 1.03390 1.01963 1.23025 0.98925 1.00744 1.01667 1.22312 0.95600 0.93851 1.02045 1.21246 0.89547 0.97332 1.03922 0.82693 0.81713 0.86969 0.83921 0.97430 0.91292 0.93116 0.87836 0.90913 0.91498 0.88578 0.88568 0.89039 0.87365 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.43 18.54 19.00 0.35 -17.08 16 2 C 0.28 9.17 15.33 88.33 1.35 10.53 16 3 C -0.06 -1.70 5.73 -21.39 -0.12 -1.82 16 4 C -0.06 -1.36 9.76 22.51 0.22 -1.14 16 5 C -0.11 -2.11 10.02 22.27 0.22 -1.89 16 6 C -0.05 -1.17 6.14 -19.49 -0.12 -1.29 16 7 C -0.14 -3.84 5.33 -19.61 -0.10 -3.94 16 8 C -0.06 -1.89 9.09 22.57 0.21 -1.68 16 9 C 0.12 2.94 3.16 44.85 0.14 3.08 16 10 H 0.09 2.08 7.95 -2.38 -0.02 2.07 16 11 N -0.66 -21.26 6.30 -491.93 -3.10 -24.36 16 12 C 0.10 3.88 5.02 86.30 0.43 4.31 16 13 C -0.02 -0.88 0.99 -52.93 -0.05 -0.93 16 14 C -0.47 -25.36 8.76 25.60 0.22 -25.14 16 15 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 16 C 0.03 1.73 5.47 84.65 0.46 2.20 16 17 N -0.94 -58.46 13.96 21.45 0.30 -58.16 16 18 Si 0.92 45.41 24.91 68.60 1.71 47.12 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.31 -16.39 7.11 99.48 0.71 -15.68 16 21 H -0.23 -10.12 5.74 99.48 0.57 -9.55 16 22 C -0.15 -5.58 9.96 30.62 0.30 -5.27 16 23 C -0.21 -8.16 7.28 30.62 0.22 -7.94 16 24 C -0.10 -1.76 6.77 31.49 0.21 -1.55 16 25 C -0.08 -1.40 6.77 30.53 0.21 -1.19 16 26 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 27 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 28 H 0.11 3.56 7.39 -2.91 -0.02 3.54 16 29 H 0.34 12.91 7.86 -89.69 -0.71 12.21 16 30 H 0.01 0.31 5.64 -2.39 -0.01 0.29 16 31 H 0.07 2.25 8.09 -2.39 -0.02 2.23 16 32 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.07 2.88 7.05 -2.38 -0.02 2.86 16 36 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.65 8.09 -2.39 -0.02 1.63 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -67.45 332.65 3.29 -64.16 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.21 Total: 22.00 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 3.81 Total: -33.68 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -2.45 Total: -99.60 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.71 Total: 47.12 kcal Total: -67.45 3.29 -64.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353643129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.498 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds