Wall clock time and date at job start Tue Mar 31 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42892 * 113.99846 * 2 1 4 4 C 1.52998 * 109.47253 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47368 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47110 * 55.00556 * 5 4 3 7 7 N 1.46496 * 109.47369 * 294.99922 * 5 4 3 8 8 C 1.34773 * 119.99973 * 154.99676 * 7 5 4 9 9 O 1.21588 * 120.00151 * 359.73121 * 8 7 5 10 10 N 1.34784 * 119.99935 * 180.02562 * 8 7 5 11 11 C 1.46499 * 119.99893 * 179.72905 * 10 8 7 12 12 C 1.50699 * 109.46700 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00629 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99714 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00098 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99896 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47258 * 59.99641 * 16 14 12 18 18 H 1.48510 * 109.47258 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47373 * 299.99470 * 16 14 12 20 20 C 1.50705 * 109.47018 * 175.00046 * 5 4 3 21 21 C 1.34513 * 125.78838 * 259.71629 * 20 5 4 22 22 C 1.41387 * 106.84029 * 179.89220 * 21 20 5 23 23 C 1.34513 * 106.84110 * 0.36876 * 22 21 20 24 24 O 1.34299 * 125.78884 * 80.02973 * 20 5 4 25 25 H 1.09001 * 109.47162 * 60.00002 * 1 2 3 26 26 H 1.09008 * 109.46917 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47174 * 299.99715 * 1 2 3 28 28 H 1.09005 * 109.46930 * 60.00242 * 3 2 1 29 29 H 1.08997 * 109.47342 * 300.00255 * 3 2 1 30 30 H 1.09001 * 109.47167 * 59.99812 * 4 3 2 31 31 H 1.09007 * 109.47123 * 300.00345 * 4 3 2 32 32 H 0.97004 * 120.00009 * 335.00525 * 7 5 4 33 33 H 0.97005 * 119.99846 * 359.72693 * 10 8 7 34 34 H 1.08998 * 109.47134 * 299.99552 * 11 10 8 35 35 H 1.08994 * 109.47397 * 59.99843 * 11 10 8 36 36 H 0.97003 * 119.99632 * 179.97438 * 15 14 12 37 37 H 1.07999 * 126.57968 * 0.02562 * 21 20 5 38 38 H 1.08000 * 126.57905 * 180.16279 * 22 21 20 39 39 H 1.07997 * 125.79504 * 179.75060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 1 3.7667 3.1538 0.8431 7 7 3.8236 3.2663 -1.2504 8 6 3.8031 4.6130 -1.2978 9 8 4.0569 5.2604 -0.3004 10 7 3.4952 5.2422 -2.4493 11 6 3.4671 6.7061 -2.4993 12 6 3.0979 7.1541 -3.8899 13 1 2.9040 6.4218 -4.6597 14 6 3.0086 8.4991 -4.1799 15 7 3.2451 9.3910 -3.2427 16 14 2.5516 9.0546 -5.9039 17 1 1.2112 8.5217 -6.2566 18 1 2.5229 10.5385 -5.9546 19 1 3.5569 8.5453 -6.8708 20 6 5.6550 2.4655 0.1257 21 6 6.3662 2.6364 1.2546 22 6 7.7242 2.4327 0.9179 23 6 7.7624 2.1576 -0.3982 24 8 6.5061 2.1790 -0.8728 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6885 1.8463 0.8901 29 1 1.6885 1.8463 -0.8899 30 1 3.8574 0.6436 -0.8891 31 1 3.8567 0.6438 0.8909 32 1 3.6171 2.7498 -2.0452 33 1 3.2924 4.7257 -3.2450 34 1 2.7289 7.0797 -1.7896 35 1 4.4507 7.0975 -2.2402 36 1 3.1826 10.3372 -3.4469 37 1 5.9748 2.8801 2.2312 38 1 8.5691 2.4905 1.5882 39 1 8.6522 1.9545 -0.9755 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426427507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:18 Heat of formation + Delta-G solvation = -66.996355 kcal Electronic energy + Delta-G solvation = -21930.985554 eV Core-core repulsion = 18454.580070 eV Total energy + Delta-G solvation = -3476.405484 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.45657 -39.39237 -38.11431 -35.81249 -34.06385 -32.89462 -32.42198 -31.37036 -29.72595 -27.30302 -26.69852 -24.91339 -22.70109 -21.98374 -21.57879 -20.44526 -20.03563 -18.17654 -17.57809 -16.68344 -16.27007 -16.03151 -15.82108 -15.55137 -15.26028 -14.72769 -14.70970 -14.00352 -13.80119 -13.43602 -13.08513 -12.85507 -12.70213 -12.57173 -12.04228 -11.96460 -11.91782 -11.66295 -11.46082 -11.25079 -10.96618 -10.86913 -10.29703 -9.86953 -9.79326 -9.45651 -9.37916 -8.97451 -8.70827 -8.36662 -7.78525 -6.14482 -4.21148 1.81705 2.69968 3.00388 3.26222 3.26527 3.31561 3.34668 3.59916 3.91637 4.33470 4.66070 4.80373 4.84481 4.97228 5.07842 5.12513 5.15129 5.16918 5.21554 5.28304 5.36123 5.42088 5.46443 5.75769 5.84513 5.89563 6.00735 6.16806 6.54228 6.73061 6.93210 7.07539 7.27154 7.50504 7.54184 7.57686 7.89306 8.03795 8.76153 8.92266 9.31336 9.47714 10.95718 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013296 B = 0.004246 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.350441 B = 6592.782975 C = 8141.484370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.122 4.122 5 C 0.253 3.747 6 H 0.118 0.882 7 N -0.751 5.751 8 C 0.694 3.306 9 O -0.596 6.596 10 N -0.727 5.727 11 C 0.268 3.732 12 C -0.542 4.542 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.013 4.013 21 C -0.201 4.201 22 C -0.214 4.214 23 C -0.046 4.046 24 O -0.168 6.168 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.395 0.605 33 H 0.387 0.613 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -19.354 6.237 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.160 4.160 5 C 0.146 3.854 6 H 0.136 0.864 7 N -0.408 5.408 8 C 0.394 3.606 9 O -0.474 6.474 10 N -0.379 5.379 11 C 0.147 3.853 12 C -0.581 4.581 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.065 4.065 21 C -0.221 4.221 22 C -0.233 4.233 23 C -0.114 4.114 24 O -0.063 6.063 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.229 0.771 33 H 0.219 0.781 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.204 -18.676 6.879 19.939 hybrid contribution -0.305 0.291 -1.446 1.506 sum 0.899 -18.385 5.433 19.192 Atomic orbital electron populations 1.22741 0.80836 1.02615 1.00284 1.87829 1.19865 1.28051 1.95531 1.22510 0.93181 0.84581 1.01285 1.21798 0.93726 0.95569 1.04943 1.19086 0.84032 0.92665 0.89591 0.86449 1.45256 1.77111 1.05709 1.12737 1.16150 0.78591 0.80938 0.84916 1.90884 1.56896 1.64931 1.34709 1.45719 1.72366 1.10254 1.09532 1.18981 0.97555 0.71758 0.97055 1.21187 1.49244 0.92240 0.95412 0.92005 1.24937 0.94973 0.96365 0.97690 1.69970 1.47825 1.01574 1.32925 0.86474 0.79005 0.77590 0.83809 1.20102 1.21073 1.20095 1.22907 0.93028 1.04257 0.86336 1.21544 0.93147 1.07860 0.99524 1.21783 0.97621 1.07843 0.96103 1.23998 0.85847 1.06550 0.94993 1.84008 1.16112 1.68787 1.37399 0.93870 0.89706 0.93986 0.92777 0.92467 0.90012 0.89104 0.77109 0.78122 0.95706 0.95764 0.92411 0.83534 0.83664 0.78411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.29 10.70 -35.23 -0.38 -4.67 16 3 C 0.06 0.63 5.82 37.16 0.22 0.85 16 4 C -0.12 -1.26 5.10 -26.73 -0.14 -1.39 16 5 C 0.25 3.37 2.43 -69.08 -0.17 3.20 16 6 H 0.12 1.67 7.56 -51.93 -0.39 1.28 16 7 N -0.75 -11.23 4.51 -59.81 -0.27 -11.50 16 8 C 0.69 14.29 8.52 -86.91 -0.74 13.55 16 9 O -0.60 -14.79 16.00 5.29 0.08 -14.71 16 10 N -0.73 -15.62 5.55 -66.42 -0.37 -15.99 16 11 C 0.27 7.21 5.43 -5.19 -0.03 7.18 16 12 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 13 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.01 -0.19 6.12 -35.62 -0.22 -0.41 16 21 C -0.20 -2.78 10.80 -39.70 -0.43 -3.21 16 22 C -0.21 -2.69 10.91 -39.70 -0.43 -3.12 16 23 C -0.05 -0.57 12.09 29.42 0.36 -0.21 16 24 O -0.17 -2.47 10.64 5.69 0.06 -2.41 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.39 4.84 8.62 -40.82 -0.35 4.49 16 33 H 0.39 7.11 8.34 -40.82 -0.34 6.77 16 34 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -34.54 342.02 -6.56 -41.10 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.67 Total: 8.29 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.89 Total: 4.36 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.10 Total: -53.02 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.23 Total: -21.79 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.54 -6.56 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426427507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.894 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds