Wall clock time and date at job start Tue Mar 31 2020 05:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46912 * 2 1 4 4 C 1.52999 * 109.47543 * 240.00191 * 2 1 3 5 5 O 1.42904 * 109.47417 * 119.99762 * 2 1 3 6 6 C 1.42904 * 113.99504 * 60.00299 * 5 2 1 7 7 C 1.50706 * 109.46891 * 179.97438 * 6 5 2 8 8 C 1.35311 * 126.66450 * 90.28628 * 7 6 5 9 9 C 1.42271 * 103.92043 * 180.09264 * 8 7 6 10 10 C 1.48334 * 126.93784 * 179.91390 * 9 8 7 11 11 O 1.21503 * 120.00080 * 359.70105 * 10 9 8 12 12 N 1.34777 * 120.00028 * 179.70657 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27546 * 12 10 9 14 14 C 1.50700 * 109.46769 * 179.72341 * 13 12 10 15 15 H 1.07997 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47105 * 89.99950 * 18 16 14 20 20 H 1.48499 * 109.47427 * 210.00198 * 18 16 14 21 21 H 1.48508 * 109.47164 * 330.00232 * 18 16 14 22 22 N 1.30978 * 106.12479 * 359.64516 * 9 8 7 23 23 O 1.20908 * 111.43902 * 0.22643 * 22 9 8 24 24 H 1.08994 * 109.47177 * 299.99918 * 1 2 3 25 25 H 1.08997 * 109.47059 * 60.00304 * 1 2 3 26 26 H 1.09008 * 109.46705 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47215 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47011 * 299.99726 * 3 2 1 29 29 H 1.08994 * 109.47133 * 60.00055 * 3 2 1 30 30 H 1.09008 * 109.47169 * 299.99776 * 4 2 1 31 31 H 1.08997 * 109.47347 * 59.99681 * 4 2 1 32 32 H 1.09000 * 109.47834 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47117 * 60.00197 * 6 5 2 34 34 H 1.08992 * 109.46953 * 300.00164 * 6 5 2 35 35 H 1.07999 * 128.03814 * 359.96473 * 8 7 6 36 36 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 37 37 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 38 38 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 39 39 H 0.96999 * 120.00067 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1422 -2.6447 2.5251 8 6 1.5526 -2.6628 3.7430 9 6 2.4891 -3.3477 4.5664 10 6 2.3511 -3.6501 6.0120 11 8 1.3568 -3.2968 6.6144 12 7 3.3286 -4.3167 6.6574 13 6 3.1895 -4.6206 8.0838 14 6 4.4067 -5.3720 8.5582 15 1 5.2038 -5.6006 7.8664 16 6 4.5025 -5.7676 9.8756 17 7 3.5315 -5.4896 10.7179 18 14 6.0108 -6.6995 10.4636 19 1 7.0352 -5.7347 10.9378 20 1 5.6303 -7.6049 11.5775 21 1 6.5662 -7.5001 9.3428 22 7 3.4952 -3.6623 3.7890 23 8 3.3154 -3.2789 2.6565 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6768 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1301 -0.7216 -1.2490 33 1 1.9493 -2.5916 0.4007 34 1 0.4959 -2.0777 1.2907 35 1 0.5948 -2.2511 4.0248 36 1 4.1223 -4.5989 6.1765 37 1 3.0942 -3.6914 8.6456 38 1 2.3011 -5.2324 8.2400 39 1 3.5987 -5.7682 11.6446 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427626359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:34 Heat of formation + Delta-G solvation = -30.836954 kcal Electronic energy + Delta-G solvation = -21377.518174 eV Core-core repulsion = 17902.680679 eV Total energy + Delta-G solvation = -3474.837495 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.00866 -39.48069 -38.76576 -34.54366 -34.27335 -33.76013 -32.46417 -31.96309 -28.20873 -27.84311 -27.56950 -26.57557 -24.54366 -22.74634 -21.92385 -20.49325 -19.57807 -17.97839 -17.78417 -16.86911 -16.81077 -15.92983 -15.76852 -15.27415 -15.02547 -14.48018 -14.36935 -14.29236 -13.87647 -13.75757 -13.20481 -12.89603 -12.59755 -12.44815 -12.17665 -12.14488 -12.01112 -11.96296 -11.81423 -11.41324 -11.01739 -10.99480 -10.90608 -10.35374 -10.27495 -9.97614 -9.62552 -9.54214 -9.41792 -8.77402 -7.99884 -6.18211 -4.25200 1.17402 1.72913 2.75425 3.25286 3.30960 3.33902 3.48109 3.70165 3.71319 4.18090 4.31815 4.39111 4.40287 4.57414 4.63917 4.73942 4.95719 5.06472 5.08614 5.16437 5.18174 5.29095 5.33153 5.41889 5.43665 5.44701 5.58490 5.64108 5.84185 5.85377 5.90577 6.78854 7.20544 7.27401 7.44556 7.61710 7.91803 8.07407 8.51243 8.68802 8.92696 9.40813 10.92036 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.042653 B = 0.002678 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.297647 B =10453.767313 C =10738.940055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.369 6.369 6 C 0.143 3.857 7 C -0.049 4.049 8 C -0.155 4.155 9 C -0.016 4.016 10 C 0.578 3.422 11 O -0.538 6.538 12 N -0.690 5.690 13 C 0.248 3.752 14 C -0.545 4.545 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.906 3.094 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 N -0.326 5.326 23 O 0.126 5.874 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.181 0.819 36 H 0.398 0.602 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.082 10.174 -25.500 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.069 3.931 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.289 6.289 6 C 0.066 3.934 7 C -0.112 4.112 8 C -0.177 4.177 9 C -0.176 4.176 10 C 0.359 3.641 11 O -0.415 6.415 12 N -0.338 5.338 13 C 0.128 3.872 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.733 3.267 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.197 1.197 22 N -0.026 5.026 23 O 0.049 5.951 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.198 0.802 36 H 0.232 0.768 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.583 9.818 -24.399 26.697 hybrid contribution 0.255 -0.413 0.118 0.499 sum -4.329 9.405 -24.281 26.396 Atomic orbital electron populations 1.22475 0.95421 1.02762 1.03292 1.21568 0.93326 0.93337 0.84913 1.21770 1.02213 0.92947 1.02664 1.22473 1.02614 1.01040 0.97788 1.88083 1.74608 1.22591 1.43607 1.20601 0.98156 0.83435 0.91188 1.23859 0.87904 1.01451 0.97983 1.22484 1.02758 1.02062 0.90431 1.23944 0.92541 1.02987 0.98121 1.16963 0.84440 0.79997 0.82673 1.90761 1.30311 1.54038 1.66346 1.46438 1.19766 1.53804 1.13818 1.19258 0.97962 0.96761 0.73234 1.21209 1.03975 1.37627 0.95490 0.91729 1.24947 0.96861 0.95816 0.96326 1.69971 1.31999 1.45622 1.04674 0.86374 0.82239 0.79593 0.78494 1.20384 1.20945 1.19677 1.74197 1.21550 1.16378 0.90468 1.84777 1.33173 1.53099 1.24057 0.91309 0.91238 0.91995 0.91600 0.90960 0.91567 0.91969 0.91263 0.91347 0.90438 0.89368 0.80172 0.76847 0.94969 0.94970 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 8.25 37.16 0.31 -0.69 16 2 C 0.11 0.74 1.14 -90.62 -0.10 0.63 16 3 C -0.14 -0.87 8.84 37.16 0.33 -0.54 16 4 C -0.18 -0.99 8.25 37.16 0.31 -0.68 16 5 O -0.37 -3.64 9.97 -35.23 -0.35 -3.99 16 6 C 0.14 1.22 5.69 36.01 0.21 1.43 16 7 C -0.05 -0.60 7.10 -35.35 -0.25 -0.85 16 8 C -0.16 -2.25 10.92 -39.08 -0.43 -2.68 16 9 C -0.02 -0.30 7.19 -82.53 -0.59 -0.89 16 10 C 0.58 12.78 7.85 -12.11 -0.10 12.68 16 11 O -0.54 -13.37 16.95 5.36 0.09 -13.28 16 12 N -0.69 -15.95 5.55 -62.27 -0.35 -16.29 16 13 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 14 C -0.54 -15.21 9.28 -34.44 -0.32 -15.52 16 15 H 0.06 1.71 7.60 -52.49 -0.40 1.31 16 16 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 18 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 N -0.33 -5.55 11.84 33.29 0.39 -5.15 16 23 O 0.13 1.81 11.18 17.25 0.19 2.00 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.30 6.55 -51.92 -0.34 -0.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.30 6.54 -51.92 -0.34 -0.04 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.51 6.42 -51.93 -0.33 0.18 16 34 H 0.09 0.57 6.42 -51.93 -0.33 0.24 16 35 H 0.18 2.29 8.06 -52.49 -0.42 1.86 16 36 H 0.40 8.44 8.08 -40.82 -0.33 8.11 16 37 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -32.83 336.28 -5.44 -38.27 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.44 Total: 1.36 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.77 Total: 1.32 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.79 Total: -46.98 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.07 Total: -15.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.83 -5.44 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.437 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds