Wall clock time and date at job start Tue Mar 31 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99718 * 2 1 4 4 H 1.48511 * 109.46778 * 240.00299 * 3 2 1 5 5 H 1.48500 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47298 * 120.00199 * 3 2 1 7 7 C 1.37876 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00423 * 173.59892 * 7 2 1 9 9 C 1.50702 * 119.99614 * 353.59565 * 7 2 1 10 10 C 1.53005 * 115.54929 * 85.44649 * 9 7 2 11 11 N 1.46904 * 109.46994 * 65.04715 * 10 9 7 12 12 C 1.46898 * 110.99888 * 185.34618 * 11 10 9 13 13 C 1.50700 * 109.47081 * 179.97438 * 12 11 10 14 14 C 1.39363 * 119.56885 * 269.98334 * 13 12 11 15 15 C 1.36072 * 121.06972 * 179.97438 * 14 13 12 16 16 C 1.40607 * 119.74761 * 0.04459 * 15 14 13 17 17 N 1.33682 * 121.08065 * 180.02562 * 16 15 14 18 18 C 1.31082 * 121.32089 * 179.97438 * 17 16 15 19 19 C 1.39328 * 121.75122 * 0.05377 * 18 17 16 20 20 C 1.36583 * 119.93400 * 359.92399 * 19 18 17 21 21 C 1.40768 * 118.14893 * 0.04444 * 20 19 18 22 22 C 1.36138 * 119.56565 * 90.00254 * 13 12 11 23 23 C 1.53002 * 117.49860 * 231.11753 * 9 7 2 24 24 C 1.53001 * 117.49971 * 299.77538 * 9 7 2 25 25 H 0.97002 * 120.00391 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47256 * 305.04824 * 10 9 7 27 27 H 1.08993 * 109.46769 * 185.04737 * 10 9 7 28 28 H 1.00908 * 110.99573 * 61.39495 * 11 10 9 29 29 H 1.09004 * 109.46420 * 60.00281 * 12 11 10 30 30 H 1.08994 * 109.47429 * 300.00173 * 12 11 10 31 31 H 1.07994 * 119.46430 * 0.02562 * 14 13 12 32 32 H 1.07994 * 120.13052 * 180.02562 * 15 14 13 33 33 H 1.07997 * 119.12612 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.03353 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.92283 * 180.32032 * 20 19 18 36 36 H 1.08004 * 120.19359 * 0.02562 * 22 13 12 37 37 H 1.08999 * 117.49601 * 215.00914 * 23 9 7 38 38 H 1.08996 * 117.49692 * 0.02562 * 23 9 7 39 39 H 1.09001 * 117.49659 * 359.97438 * 24 9 7 40 40 H 1.09004 * 117.49657 * 144.97428 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1968 -0.1048 9 6 1.2582 -2.4951 0.1445 10 6 0.7038 -3.0860 -1.1534 11 7 1.8171 -3.4572 -2.0372 12 6 1.3230 -3.9109 -3.3441 13 6 2.4907 -4.2815 -4.2215 14 6 3.0735 -3.3126 -5.0363 15 6 4.1294 -3.6135 -5.8401 16 6 4.6449 -4.9216 -5.8542 17 7 5.6816 -5.2464 -6.6332 18 6 6.1663 -6.4642 -6.6497 19 6 5.6277 -7.4784 -5.8607 20 6 4.5675 -7.2142 -5.0413 21 6 4.0502 -5.9051 -5.0258 22 6 2.9623 -5.5585 -4.2082 23 6 1.7458 -3.4738 1.2146 24 6 0.4402 -2.7019 1.4208 25 1 -0.4851 0.8400 0.0004 26 1 0.0764 -2.3463 -1.6505 27 1 0.1104 -3.9713 -0.9251 28 1 2.4010 -4.1592 -1.6078 29 1 0.7545 -3.1092 -3.8157 30 1 0.6802 -4.7805 -3.2076 31 1 2.6812 -2.3064 -5.0289 32 1 4.5696 -2.8507 -6.4651 33 1 7.0051 -6.6875 -7.2923 34 1 6.0488 -8.4723 -5.8964 35 1 4.1408 -7.9870 -4.4191 36 1 2.5020 -6.3009 -3.5731 37 1 1.6718 -4.5387 0.9940 38 1 2.6062 -3.1764 1.8141 39 1 0.4423 -1.8970 2.1558 40 1 -0.4931 -3.2585 1.3358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430064539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:01 Heat of formation + Delta-G solvation = 77.561931 kcal Electronic energy + Delta-G solvation = -20782.956141 eV Core-core repulsion = 17755.961189 eV Total energy + Delta-G solvation = -3026.994952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.81772 -37.82467 -36.77598 -34.26951 -33.48636 -31.81947 -30.66890 -30.11990 -26.59337 -25.34436 -24.10863 -23.46364 -22.31090 -21.74698 -20.97490 -19.01820 -18.02873 -17.00860 -16.81727 -15.99780 -15.02943 -14.60469 -14.50639 -14.43971 -14.16385 -14.06894 -13.87170 -13.39389 -13.18560 -13.12004 -12.72331 -11.99523 -11.70624 -11.59652 -11.28637 -11.18170 -11.00038 -10.88647 -10.66446 -10.61775 -10.43655 -10.15849 -9.57043 -9.45348 -8.79921 -8.69800 -8.35113 -8.25645 -8.02550 -7.57306 -5.93701 -3.95026 0.37789 0.80215 1.99424 2.91240 3.38048 3.41766 3.45759 4.08804 4.24675 4.49718 4.52259 4.67313 4.76926 4.79278 5.02962 5.06057 5.18537 5.35852 5.36740 5.42866 5.47673 5.66495 5.76000 5.90935 5.92305 6.05047 6.11845 6.18350 6.31179 6.35551 6.48960 6.49510 6.59176 6.69445 6.74378 6.85731 6.89765 7.12846 7.48287 7.56958 7.85226 7.90351 7.99514 8.11396 8.57558 9.03986 9.68127 11.16152 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.003765 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.344363 B = 7435.778953 C = 8110.825150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.470 4.470 8 H 0.059 0.941 9 C 0.053 3.947 10 C 0.107 3.893 11 N -0.662 5.662 12 C 0.093 3.907 13 C -0.057 4.057 14 C -0.070 4.070 15 C -0.100 4.100 16 C 0.123 3.877 17 N -0.474 5.474 18 C 0.122 3.878 19 C -0.183 4.183 20 C -0.057 4.057 21 C -0.099 4.099 22 C -0.101 4.101 23 C -0.216 4.216 24 C -0.158 4.158 25 H 0.258 0.742 26 H 0.078 0.922 27 H -0.005 1.005 28 H 0.331 0.669 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.126 0.874 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.024 -13.954 -11.010 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.508 4.508 8 H 0.077 0.923 9 C 0.053 3.947 10 C -0.021 4.021 11 N -0.292 5.292 12 C -0.036 4.036 13 C -0.058 4.058 14 C -0.090 4.090 15 C -0.119 4.119 16 C 0.002 3.998 17 N -0.182 5.182 18 C -0.051 4.051 19 C -0.203 4.203 20 C -0.083 4.083 21 C -0.101 4.101 22 C -0.120 4.120 23 C -0.254 4.254 24 C -0.196 4.196 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.013 0.987 28 H 0.148 0.852 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.172 0.828 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.245 -12.413 -11.716 18.176 hybrid contribution -0.276 -0.693 0.857 1.136 sum 5.969 -13.106 -10.859 18.036 Atomic orbital electron populations 1.69995 1.05790 1.26259 1.50401 1.24925 0.94746 0.98683 0.95029 0.86740 0.79655 0.83425 0.78615 1.20219 1.21539 1.20477 1.20268 0.92813 0.88387 1.49308 0.92330 1.18802 0.97110 0.93701 0.85119 1.21582 0.90485 0.95913 0.94140 1.60323 1.21936 1.44760 1.02201 1.20970 0.92633 0.98845 0.91154 1.19773 0.97147 0.92858 0.96007 1.20932 0.94669 0.99795 0.93618 1.20788 0.96670 0.94409 1.00031 1.18895 0.92840 0.94248 0.93808 1.68015 1.10295 1.20170 1.19748 1.22883 0.97953 0.88156 0.96130 1.21821 0.98399 1.01065 0.98991 1.21465 0.94888 0.95359 0.96610 1.18793 0.97866 0.94456 0.98942 1.20843 0.95828 0.96740 0.98636 1.22993 0.98563 0.95381 1.08423 1.22521 0.91920 1.01164 1.04012 0.93280 0.90398 0.98698 0.85201 0.90056 0.95293 0.84674 0.84791 0.82750 0.84836 0.84634 0.85570 0.92263 0.90534 0.90053 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 12.92 55.43 0.72 -24.25 16 2 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.47 -12.73 8.74 -34.44 -0.30 -13.03 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.21 16 9 C 0.05 1.28 1.55 -155.65 -0.24 1.04 16 10 C 0.11 2.32 5.51 -3.82 -0.02 2.29 16 11 N -0.66 -12.50 6.37 -115.06 -0.73 -13.23 16 12 C 0.09 1.43 5.77 -4.98 -0.03 1.40 16 13 C -0.06 -0.82 5.36 -104.96 -0.56 -1.38 16 14 C -0.07 -0.99 9.58 -39.94 -0.38 -1.37 16 15 C -0.10 -1.39 9.98 -39.47 -0.39 -1.79 16 16 C 0.12 1.76 6.60 -84.85 -0.56 1.20 16 17 N -0.47 -6.49 10.34 -10.97 -0.11 -6.61 16 18 C 0.12 1.27 11.15 -17.47 -0.19 1.07 16 19 C -0.18 -1.66 10.03 -39.77 -0.40 -2.06 16 20 C -0.06 -0.59 9.90 -39.22 -0.39 -0.98 16 21 C -0.10 -1.29 5.74 -106.80 -0.61 -1.90 16 22 C -0.10 -1.30 9.38 -39.51 -0.37 -1.67 16 23 C -0.22 -4.65 9.96 -26.69 -0.27 -4.92 16 24 C -0.16 -3.68 9.41 -26.69 -0.25 -3.94 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.08 1.88 8.13 -51.93 -0.42 1.46 16 27 H -0.01 -0.10 8.09 -51.93 -0.42 -0.52 16 28 H 0.33 5.95 8.78 -39.29 -0.34 5.61 16 29 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 30 H 0.03 0.41 8.07 -51.93 -0.42 -0.01 16 31 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 39 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -30.04 342.73 -10.86 -40.90 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.80 Total: 5.90 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -5.07 Total: -24.25 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.13 Total: -44.09 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.04 -10.86 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430064539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.463 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds