Wall clock time and date at job start Tue Mar 31 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42907 * 109.46927 * 2 1 4 4 C 1.35732 * 116.99830 * 180.02562 * 3 2 1 5 5 C 1.41849 * 126.78556 * 179.97438 * 4 3 2 6 6 C 1.36667 * 103.81189 * 179.73716 * 5 4 3 7 7 C 1.47536 * 126.87956 * 180.26045 * 6 5 4 8 8 O 1.21581 * 120.00522 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99729 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99959 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47163 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47306 * 300.00101 * 11 10 9 13 13 C 1.52995 * 109.47047 * 60.00224 * 11 10 9 14 14 C 1.50704 * 109.46918 * 179.97438 * 11 10 9 15 15 H 1.08000 * 120.00393 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99944 * 179.97438 * 14 11 10 17 17 N 1.31512 * 119.99815 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00024 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47435 * 59.99904 * 18 16 14 20 20 H 1.48499 * 109.46866 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46921 * 299.99893 * 18 16 14 22 22 O 1.34661 * 106.24103 * 0.26168 * 6 5 4 23 23 N 1.20874 * 111.63162 * 0.02562 * 22 6 5 24 24 H 1.09001 * 109.47131 * 60.00129 * 1 2 3 25 25 H 1.08991 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47169 * 300.00479 * 1 2 3 27 27 H 1.08995 * 109.47051 * 239.99966 * 2 1 3 28 28 H 1.09003 * 109.46865 * 119.99147 * 2 1 3 29 29 H 1.08002 * 128.09751 * 0.02562 * 5 4 3 30 30 H 0.96992 * 120.00618 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47236 * 299.99994 * 10 9 7 32 32 H 1.09008 * 109.47154 * 59.99969 * 10 9 7 33 33 H 1.08998 * 109.46756 * 59.99996 * 12 11 10 34 34 H 1.08999 * 109.47057 * 180.02562 * 12 11 10 35 35 H 1.09000 * 109.46668 * 299.99932 * 12 11 10 36 36 H 1.09007 * 109.47535 * 60.00002 * 13 11 10 37 37 H 1.09007 * 109.47184 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47492 * 299.99672 * 13 11 10 39 39 H 0.97003 * 120.00194 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3520 1.5252 -0.0005 5 6 4.0452 2.7628 -0.0012 6 6 5.3625 2.3988 0.0046 7 6 6.5302 3.3005 0.0119 8 8 6.3679 4.5055 0.0138 9 7 7.7769 2.7885 0.0165 10 6 8.9365 3.6839 0.0243 11 6 10.2217 2.8539 0.0289 12 6 10.2527 1.9685 1.2763 13 6 10.2652 1.9742 -1.2221 14 6 11.4145 3.7750 0.0363 15 1 11.2703 4.8453 0.0381 16 6 12.6900 3.2512 0.0420 17 7 12.8656 1.9479 0.0403 18 14 14.1684 4.3929 0.0519 19 1 14.1261 5.2472 1.2658 20 1 15.4159 3.5873 0.0562 21 1 14.1386 5.2518 -1.1591 22 8 5.3812 1.0523 0.0021 23 7 4.2640 0.5912 -0.0046 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.6294 3.7595 -0.0009 30 1 7.9066 1.8273 0.0153 31 1 8.9143 4.3150 -0.8641 32 1 8.9058 4.3104 0.9159 33 1 9.3900 1.3023 1.2704 34 1 11.1685 1.3775 1.2797 35 1 10.2217 2.5953 2.1675 36 1 10.2432 2.6050 -2.1109 37 1 11.1811 1.3832 -1.2191 38 1 9.4025 1.3080 -1.2280 39 1 13.7629 1.5794 0.0439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:30 Heat of formation + Delta-G solvation = -15.938279 kcal Electronic energy + Delta-G solvation = -21893.990003 eV Core-core repulsion = 18419.798563 eV Total energy + Delta-G solvation = -3474.191440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.04689 -39.44235 -39.18973 -36.51350 -33.77787 -33.40020 -32.07613 -31.43164 -30.75782 -26.14979 -25.75146 -25.27186 -24.22893 -23.46331 -22.70600 -20.75721 -19.17392 -18.68835 -18.05075 -17.05867 -16.20655 -16.18095 -15.80407 -15.42693 -14.84362 -14.78454 -14.61224 -13.82820 -13.46147 -13.40103 -13.03366 -12.96307 -12.91852 -12.25520 -12.20649 -11.48191 -11.46446 -11.43818 -11.22052 -10.88229 -10.75707 -10.42627 -10.29450 -10.08465 -9.92365 -9.67965 -9.48506 -9.39198 -8.83953 -8.64013 -8.38643 -6.04321 -4.14993 0.74835 1.98223 2.39619 2.64700 3.15575 3.29165 3.33871 3.36741 3.58853 3.97339 4.38211 4.53024 4.54536 4.67587 4.88335 4.98099 5.08533 5.22517 5.27740 5.38020 5.55685 5.63749 6.10532 6.22221 6.44531 6.58711 6.74331 6.80723 6.81810 6.89673 6.97684 7.30656 7.52516 7.63688 7.70505 7.98083 7.98119 8.09505 8.26563 8.37625 8.85080 9.51047 10.97080 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.048535 B = 0.003032 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.762688 B = 9231.504142 C = 9606.576902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.282 6.282 4 C 0.205 3.795 5 C -0.164 4.164 6 C -0.045 4.045 7 C 0.592 3.408 8 O -0.520 6.520 9 N -0.694 5.694 10 C 0.128 3.872 11 C 0.056 3.944 12 C -0.134 4.134 13 C -0.134 4.134 14 C -0.508 4.508 15 H 0.058 0.942 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 O 0.117 5.883 23 N -0.393 5.393 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.189 0.811 30 H 0.406 0.594 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.008 0.992 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.087 0.913 38 H 0.008 0.992 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.446 -4.615 -0.066 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.189 6.189 4 C 0.008 3.992 5 C -0.187 4.187 6 C -0.111 4.111 7 C 0.373 3.627 8 O -0.397 6.397 9 N -0.344 5.344 10 C 0.007 3.993 11 C 0.056 3.944 12 C -0.192 4.192 13 C -0.192 4.192 14 C -0.547 4.547 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 O 0.051 5.949 23 N -0.118 5.118 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.206 0.794 30 H 0.243 0.757 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.027 0.973 34 H 0.106 0.894 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.027 0.973 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.654 -5.010 -0.071 19.315 hybrid contribution 0.615 0.639 0.006 0.887 sum -18.038 -4.371 -0.065 18.561 Atomic orbital electron populations 1.21795 0.92171 1.03201 1.03675 1.22838 0.95873 0.80600 1.02526 1.86210 1.13062 1.30223 1.89388 1.21837 0.85768 0.90573 1.01019 1.22145 0.90127 0.99155 1.07237 1.24390 0.96961 0.84138 1.05648 1.16567 0.81337 0.86032 0.78751 1.90858 1.84904 1.12787 1.51125 1.46317 1.05231 1.12103 1.70760 1.21946 0.83730 0.92444 1.01221 1.18372 0.89895 0.93128 0.93044 1.21864 1.00757 0.99027 0.97522 1.21865 1.00767 0.99031 0.97502 1.20916 0.89868 0.92584 1.51287 0.92368 1.24878 0.98798 0.95075 0.94714 1.69790 1.21936 1.10351 1.50242 0.86616 0.81775 0.80679 0.78684 1.20264 1.21342 1.20269 1.84968 1.22720 1.18799 1.68379 1.73997 0.90463 1.22216 1.25107 0.91336 0.89953 0.91340 0.91505 0.91507 0.79392 0.75715 0.91877 0.91888 0.97318 0.89433 0.95283 0.95282 0.89440 0.97323 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.53 16 2 C 0.06 0.50 6.38 37.16 0.24 0.74 16 3 O -0.28 -3.32 10.21 -18.90 -0.19 -3.51 16 4 C 0.21 2.72 8.00 -16.72 -0.13 2.59 16 5 C -0.16 -2.16 10.97 -38.77 -0.43 -2.58 16 6 C -0.04 -0.65 7.29 -36.36 -0.26 -0.91 16 7 C 0.59 9.90 7.82 -12.47 -0.10 9.80 16 8 O -0.52 -10.05 16.91 5.29 0.09 -9.96 16 9 N -0.69 -11.87 4.96 -61.35 -0.30 -12.17 16 10 C 0.13 2.56 4.50 -4.04 -0.02 2.54 16 11 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 12 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 13 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 14 C -0.51 -12.87 8.01 -34.44 -0.28 -13.14 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 17 N -0.88 -23.14 9.35 55.43 0.52 -22.62 16 18 Si 0.89 20.32 29.54 -169.99 -5.02 15.29 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 22 O 0.12 1.66 11.03 15.50 0.17 1.83 16 23 N -0.39 -5.53 11.50 30.47 0.35 -5.18 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.19 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.41 6.45 5.99 -40.82 -0.24 6.20 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 33 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 34 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 38 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 39 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 329.11 15.07 4.96 4.96 Total: -1.00 -27.42 329.11 -4.95 -32.37 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.36 Total: 2.94 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.17 Total: -3.96 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.56 Total: -39.97 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.07 Total: -11.64 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.42 -4.95 -32.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.436 kcal (2) G-P(sol) polarization free energy of solvation -27.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds