Wall clock time and date at job start Tue Mar 31 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00272 * 2 1 4 4 H 1.48501 * 109.47361 * 270.00010 * 3 2 1 5 5 H 1.48492 * 109.47414 * 30.00356 * 3 2 1 6 6 H 1.48504 * 109.47023 * 150.00497 * 3 2 1 7 7 C 1.37878 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00034 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.53383 * 300.09928 * 9 7 2 11 11 C 1.53118 * 109.50290 * 60.19931 * 9 7 2 12 12 C 1.53109 * 109.16093 * 177.59596 * 11 9 7 13 13 C 1.53041 * 109.28110 * 302.34409 * 12 11 9 14 14 N 1.46843 * 109.52141 * 59.17528 * 13 12 11 15 15 C 1.38424 * 111.00015 * 174.16325 * 14 13 12 16 16 N 1.31964 * 120.14457 * 62.10174 * 15 14 13 17 17 C 1.32656 * 122.63893 * 180.02562 * 16 15 14 18 18 C 1.36065 * 121.99382 * 359.97293 * 17 16 15 19 19 C 1.40852 * 118.85895 * 0.02562 * 18 17 16 20 20 C 1.40181 * 122.17222 * 179.97438 * 19 18 17 21 21 C 1.36284 * 119.47419 * 179.97438 * 20 19 18 22 22 C 1.39281 * 120.97433 * 0.03084 * 21 20 19 23 23 C 1.36295 * 121.04502 * 359.97438 * 22 21 20 24 24 C 1.40088 * 119.53711 * 359.97438 * 23 22 21 25 25 C 1.46846 * 111.20046 * 298.26052 * 14 13 12 26 26 H 0.97003 * 119.99494 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.52151 * 297.49742 * 11 9 7 28 28 H 1.08998 * 109.52595 * 57.62238 * 11 9 7 29 29 H 1.08999 * 109.50765 * 62.28121 * 12 11 9 30 30 H 1.09005 * 109.50586 * 182.36091 * 12 11 9 31 31 H 1.09007 * 109.45571 * 299.16339 * 13 12 11 32 32 H 1.08998 * 109.46555 * 179.19972 * 13 12 11 33 33 H 1.07995 * 118.99451 * 179.97438 * 17 16 15 34 34 H 1.08006 * 120.56887 * 180.02562 * 18 17 16 35 35 H 1.07997 * 120.25858 * 0.27422 * 20 19 18 36 36 H 1.07997 * 119.51170 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.47455 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.23498 * 179.97438 * 23 22 21 39 39 H 1.09005 * 109.46216 * 181.75435 * 25 14 13 40 40 H 1.08993 * 109.46505 * 301.72385 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4469 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6229 -2.5574 0.8884 11 6 0.3736 -2.5829 -1.2527 12 6 -0.3421 -3.9362 -1.2753 13 6 0.6978 -5.0585 -1.2390 14 7 1.5109 -4.9348 -0.0225 15 6 2.3751 -6.0083 0.1079 16 7 3.3026 -6.2270 -0.8050 17 6 4.1557 -7.2401 -0.7298 18 6 4.1316 -8.1278 0.3012 19 6 3.1704 -7.9634 1.3175 20 6 3.0830 -8.8368 2.4105 21 6 2.1314 -8.6257 3.3631 22 6 1.2448 -7.5560 3.2659 23 6 1.3024 -6.6884 2.2164 24 6 2.2686 -6.8741 1.2191 25 6 2.2447 -3.6630 -0.0013 26 1 -0.4849 0.8401 0.0004 27 1 -0.3644 -1.7809 -1.2347 28 1 0.9969 -2.4844 -2.1414 29 1 -0.9952 -4.0172 -0.4064 30 1 -0.9358 -4.0188 -2.1857 31 1 1.3418 -4.9852 -2.1154 32 1 0.1910 -6.0235 -1.2406 33 1 4.8914 -7.3640 -1.5105 34 1 4.8376 -8.9443 0.3396 35 1 3.7674 -9.6674 2.4995 36 1 2.0633 -9.2984 4.2052 37 1 0.4998 -7.4117 4.0345 38 1 0.6081 -5.8635 2.1539 39 1 2.8614 -3.6144 0.8963 40 1 2.8815 -3.5963 -0.8833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528053510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:31 Heat of formation + Delta-G solvation = 56.125563 kcal Electronic energy + Delta-G solvation = -21827.980913 eV Core-core repulsion = 18800.056410 eV Total energy + Delta-G solvation = -3027.924503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87588 -38.36843 -36.90839 -34.09683 -32.43300 -31.22529 -30.82136 -29.90469 -28.74397 -24.95475 -24.40303 -23.46643 -22.89906 -21.52763 -20.95235 -18.75786 -17.73759 -17.34004 -16.66290 -16.02961 -15.27335 -14.80039 -14.72427 -14.36739 -13.85931 -13.66754 -13.59958 -13.42472 -12.84156 -12.57066 -12.51252 -12.39470 -11.89133 -11.72741 -11.71680 -11.02564 -10.93334 -10.76046 -10.69037 -10.11912 -10.00804 -9.79147 -9.58626 -9.47163 -9.03544 -9.00270 -8.74133 -8.32131 -8.02373 -7.86085 -5.97294 -4.03046 0.46537 1.00647 2.01086 3.14847 3.32298 3.38964 3.42452 4.01339 4.16412 4.46918 4.62100 4.71048 4.90986 5.00977 5.10121 5.22560 5.33049 5.38621 5.44693 5.67479 5.77243 5.88259 5.90841 6.02174 6.07522 6.16590 6.23607 6.43541 6.45388 6.47616 6.54037 6.62245 6.69108 6.77679 6.92385 6.93521 7.16022 7.39325 7.49403 7.76131 7.84392 8.05938 8.14289 8.18718 8.46897 9.00133 9.61202 11.08816 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.004461 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.550071 B = 6275.789049 C = 6379.741881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.112 4.112 12 C -0.116 4.116 13 C 0.071 3.929 14 N -0.493 5.493 15 C 0.362 3.638 16 N -0.524 5.524 17 C 0.096 3.904 18 C -0.181 4.181 19 C -0.018 4.018 20 C -0.128 4.128 21 C -0.093 4.093 22 C -0.141 4.141 23 C -0.051 4.051 24 C -0.093 4.093 25 C 0.076 3.924 26 H 0.260 0.740 27 H 0.093 0.907 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.146 0.854 39 H 0.057 0.943 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 -17.203 3.072 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.038 3.962 10 H 0.053 0.947 11 C -0.150 4.150 12 C -0.154 4.154 13 C -0.056 4.056 14 N -0.217 5.217 15 C 0.120 3.880 16 N -0.236 5.236 17 C -0.049 4.049 18 C -0.201 4.201 19 C -0.023 4.023 20 C -0.146 4.146 21 C -0.112 4.112 22 C -0.159 4.159 23 C -0.070 4.070 24 C -0.097 4.097 25 C -0.050 4.050 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.076 0.924 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.755 -16.570 2.697 17.013 hybrid contribution 1.096 0.284 -0.005 1.132 sum 3.851 -16.286 2.691 16.951 Atomic orbital electron populations 1.69888 1.05810 1.26345 1.50654 1.24909 0.94828 0.98905 0.95062 0.86620 0.79894 0.83569 0.78060 1.20745 1.21242 1.19984 1.21105 0.92866 0.90485 1.50772 0.92813 1.18688 0.92508 0.90055 0.94986 0.94652 1.21672 1.00084 0.94629 0.98587 1.21697 0.96960 0.96238 1.00541 1.22047 0.95179 0.98886 0.89459 1.60119 1.21303 1.01201 1.39079 1.20388 0.88596 0.90784 0.88223 1.67762 1.05283 1.20653 1.29908 1.21978 0.96006 0.89940 0.96945 1.21753 1.00404 1.02057 0.95886 1.18150 0.94674 0.94322 0.95161 1.20841 0.99955 0.99567 0.94283 1.20961 0.94694 0.97253 0.98282 1.20957 1.00189 0.95715 0.99077 1.21195 0.96095 0.98170 0.91587 1.18675 0.98153 0.95997 0.96907 1.22395 0.96509 0.86230 0.99821 0.93047 0.88908 0.94838 0.91947 0.93023 0.93956 0.92549 0.83567 0.84940 0.85553 0.85980 0.85701 0.83670 0.92444 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 11.36 55.43 0.63 -24.43 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.09 8.56 -34.44 -0.29 -14.38 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 13 C 0.07 1.31 5.26 -3.83 -0.02 1.29 16 14 N -0.49 -9.54 3.82 -172.83 -0.66 -10.20 16 15 C 0.36 6.55 5.33 -155.13 -0.83 5.72 16 16 N -0.52 -9.32 9.71 -12.45 -0.12 -9.44 16 17 C 0.10 1.37 11.06 -17.98 -0.20 1.17 16 18 C -0.18 -2.28 9.87 -39.37 -0.39 -2.67 16 19 C -0.02 -0.25 5.74 -106.83 -0.61 -0.86 16 20 C -0.13 -1.44 9.81 -39.56 -0.39 -1.83 16 21 C -0.09 -0.97 9.95 -39.90 -0.40 -1.37 16 22 C -0.14 -1.67 9.95 -39.89 -0.40 -2.06 16 23 C -0.05 -0.74 9.56 -39.59 -0.38 -1.12 16 24 C -0.09 -1.50 5.75 -106.70 -0.61 -2.12 16 25 C 0.08 1.68 4.48 -3.83 -0.02 1.66 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 32 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.15 2.20 7.61 -52.48 -0.40 1.80 16 39 H 0.06 1.30 8.10 -51.93 -0.42 0.87 16 40 H 0.04 0.89 8.03 -51.93 -0.42 0.47 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -29.43 324.74 -11.15 -40.58 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.74 Total: 1.18 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -5.13 Total: -18.86 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.15 Total: -44.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.43 -11.15 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528053510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.706 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds